Wall clock time and date at job start Wed Apr 1 2020 04:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99928 * 2 1 4 4 N 1.46503 * 109.47174 * 124.99917 * 3 2 1 5 5 C 1.36739 * 127.13906 * 89.97048 * 4 3 2 6 6 C 1.50701 * 126.34524 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47212 * 89.99792 * 6 5 4 8 8 H 1.09008 * 109.47017 * 54.99761 * 7 6 5 9 9 O 1.42903 * 109.47386 * 295.00166 * 7 6 5 10 10 C 1.52994 * 109.47404 * 174.99684 * 7 6 5 11 11 C 1.52999 * 117.50412 * 248.74803 * 10 7 6 12 12 C 1.53002 * 117.50104 * 180.08511 * 10 7 6 13 13 N 1.30294 * 107.30605 * 180.26193 * 5 4 3 14 14 N 1.28532 * 110.05304 * 359.56486 * 13 5 4 15 15 C 1.31227 * 109.85796 * 0.44846 * 14 13 5 16 16 N 1.38574 * 126.46884 * 179.73195 * 15 14 13 17 17 C 1.46850 * 110.99701 * 236.04585 * 16 15 14 18 18 C 1.53038 * 109.52202 * 174.16261 * 17 16 15 19 19 C 1.53125 * 109.27766 * 59.18015 * 18 17 16 20 20 C 1.53124 * 109.15911 * 302.34077 * 19 18 17 21 21 H 1.08996 * 109.50886 * 297.71841 * 20 19 18 22 22 C 1.50703 * 109.49968 * 177.63311 * 20 19 18 23 23 H 1.07998 * 120.00201 * 239.99886 * 22 20 19 24 24 C 1.37878 * 119.99756 * 60.01000 * 22 20 19 25 25 N 1.31511 * 120.00162 * 359.97438 * 24 22 20 26 26 Si 1.86800 * 119.99752 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47217 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47018 * 119.99818 * 26 24 22 29 29 H 1.48506 * 109.46886 * 239.99648 * 26 24 22 30 30 C 1.46849 * 111.00014 * 111.83786 * 16 15 14 31 31 H 1.07995 * 120.00017 * 0.02562 * 1 2 3 32 32 H 1.08002 * 120.00048 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00167 * 179.97438 * 2 1 3 34 34 H 1.09001 * 109.47025 * 4.99827 * 3 2 1 35 35 H 1.08998 * 109.46608 * 244.99502 * 3 2 1 36 36 H 1.09002 * 109.47060 * 209.99847 * 6 5 4 37 37 H 1.09001 * 109.47380 * 329.99935 * 6 5 4 38 38 H 0.96705 * 113.99520 * 300.00083 * 9 7 6 39 39 H 1.09003 * 115.54830 * 34.41759 * 10 7 6 40 40 H 1.09003 * 117.49323 * 359.97438 * 11 10 7 41 41 H 1.09003 * 117.50071 * 145.01968 * 11 10 7 42 42 H 1.09000 * 117.50257 * 214.97832 * 12 10 7 43 43 H 1.09002 * 117.49965 * 359.97438 * 12 10 7 44 44 H 1.09004 * 109.46291 * 294.17489 * 17 16 15 45 45 H 1.08994 * 109.46316 * 54.14510 * 17 16 15 46 46 H 1.08995 * 109.50430 * 179.11946 * 18 17 16 47 47 H 1.08995 * 109.50623 * 299.24100 * 18 17 16 48 48 H 1.08999 * 109.52457 * 62.24844 * 19 18 17 49 49 H 1.09000 * 109.52245 * 182.44458 * 19 18 17 50 50 H 0.96999 * 119.99914 * 179.97438 * 25 24 22 51 51 H 1.09003 * 109.46207 * 305.85368 * 30 16 15 52 52 H 1.08997 * 109.46053 * 65.81802 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 4.2911 0.9001 1.1440 6 6 5.0440 0.3003 -0.0155 7 6 5.7405 1.4129 -0.8017 8 1 6.3706 1.9940 -0.1282 9 8 4.7578 2.2672 -1.3903 10 6 6.6048 0.7952 -1.9027 11 6 8.1235 0.9095 -1.7565 12 6 7.3896 1.7504 -2.8041 13 7 4.7541 1.0986 2.3456 14 7 3.8474 1.6308 3.0849 15 6 2.7452 1.7930 2.3914 16 7 1.5540 2.3309 2.8518 17 6 0.4403 1.3961 2.6462 18 6 -0.8264 1.9593 3.2946 19 6 -1.1536 3.3178 2.6685 20 6 0.0411 4.2575 2.8541 21 1 0.2176 4.4161 3.9179 22 6 -0.2500 5.5785 2.1898 23 1 0.3884 5.9358 1.3954 24 6 -1.3313 6.3312 2.5965 25 7 -2.1089 5.8960 3.5637 26 14 -1.6917 7.9690 1.7736 27 1 -0.6750 8.2295 0.7231 28 1 -3.0419 7.9265 1.1568 29 1 -1.6445 9.0532 2.7873 30 6 1.2826 3.6277 2.2184 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8501 -0.9353 0.0004 34 1 1.3586 2.1316 0.0895 35 1 2.6213 1.4025 -0.9314 36 1 5.7894 -0.4012 0.3591 37 1 4.3471 -0.2246 -0.6688 38 1 4.1605 1.8161 -2.0026 39 1 6.2098 -0.1141 -2.3559 40 1 8.5068 1.4252 -0.8760 41 1 8.7277 0.0756 -2.1138 42 1 7.5114 1.4694 -3.8502 43 1 7.2899 2.8189 -2.6131 44 1 0.2721 1.2610 1.5777 45 1 0.6841 0.4354 3.0996 46 1 -1.6564 1.2727 3.1283 47 1 -0.6636 2.0818 4.3653 48 1 -1.3547 3.1899 1.6049 49 1 -2.0303 3.7426 3.1575 50 1 -2.8694 6.4257 3.8500 51 1 2.1382 4.2878 2.3612 52 1 1.1105 3.4821 1.1520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262938086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:50 Heat of formation + Delta-G solvation = 84.171187 kcal Electronic energy + Delta-G solvation = -32125.094866 eV Core-core repulsion = 28127.616685 eV Total energy + Delta-G solvation = -3997.478181 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.80750 -39.02169 -38.58839 -36.26483 -35.73524 -33.96261 -33.01488 -32.44570 -31.21594 -30.07018 -28.26030 -26.89576 -25.08744 -24.79618 -23.55169 -22.68603 -21.69226 -21.28923 -21.11685 -20.82525 -20.05385 -18.86303 -17.41444 -16.93286 -16.62236 -16.30531 -15.87950 -15.61353 -15.38943 -15.02772 -14.71272 -14.51234 -14.38912 -13.95242 -13.51328 -13.47945 -13.20509 -13.07815 -12.68144 -12.57311 -12.42326 -12.31963 -11.90614 -11.87305 -11.74325 -11.40888 -11.22534 -11.03493 -10.94105 -10.89878 -10.77371 -10.61891 -10.42235 -10.31700 -10.20046 -10.03757 -9.90720 -9.66549 -9.61872 -9.31235 -8.88135 -8.63592 -8.40712 -8.17582 -6.05386 -4.12201 1.70025 1.95089 2.71476 3.09655 3.25954 3.32282 3.34770 3.38094 3.84223 4.02672 4.12708 4.35348 4.40177 4.47660 4.52288 4.55426 4.64010 4.67479 4.86264 4.89314 5.01003 5.22929 5.25369 5.29764 5.32083 5.39179 5.43502 5.48799 5.56190 5.58431 5.72360 5.79112 5.81516 5.86100 5.92809 6.03296 6.11925 6.21683 6.24547 6.30822 6.34364 6.52342 6.54433 6.70898 6.84327 6.99068 7.23582 7.28919 7.34518 7.66745 7.70731 7.94986 8.04920 8.34526 8.91010 9.09172 9.52856 11.00743 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012278 B = 0.003137 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.023489 B = 8923.607759 C = 9856.534707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.193 4.193 3 C 0.128 3.872 4 N -0.486 5.486 5 C 0.173 3.827 6 C -0.056 4.056 7 C 0.141 3.859 8 H 0.107 0.893 9 O -0.549 6.549 10 C -0.195 4.195 11 C -0.171 4.171 12 C -0.165 4.165 13 N -0.292 5.292 14 N -0.277 5.277 15 C 0.368 3.632 16 N -0.444 5.444 17 C 0.047 3.953 18 C -0.118 4.118 19 C -0.112 4.112 20 C 0.057 3.943 21 H 0.041 0.959 22 C -0.516 4.516 23 H 0.055 0.945 24 C 0.065 3.935 25 N -0.886 5.886 26 Si 0.891 3.109 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.283 1.283 30 C 0.071 3.929 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.368 0.632 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.031 0.969 49 H 0.097 0.903 50 H 0.261 0.739 51 H 0.068 0.932 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.387 -15.269 -14.005 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.212 4.212 3 C 0.005 3.995 4 N -0.183 5.183 5 C -0.095 4.095 6 C -0.096 4.096 7 C 0.081 3.919 8 H 0.125 0.875 9 O -0.354 6.354 10 C -0.213 4.213 11 C -0.208 4.208 12 C -0.202 4.202 13 N -0.133 5.133 14 N -0.118 5.118 15 C 0.013 3.987 16 N -0.168 5.168 17 C -0.080 4.080 18 C -0.155 4.155 19 C -0.150 4.150 20 C 0.038 3.962 21 H 0.059 0.941 22 C -0.555 4.555 23 H 0.073 0.927 24 C -0.136 4.136 25 N -0.524 5.524 26 Si 0.719 3.281 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.209 1.209 30 C -0.055 4.055 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.216 0.784 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.050 0.950 49 H 0.115 0.885 50 H 0.071 0.929 51 H 0.086 0.914 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 11.515 -14.631 -11.816 22.052 hybrid contribution -1.528 0.182 -2.603 3.024 sum 9.987 -14.449 -14.419 22.725 Atomic orbital electron populations 1.24101 0.95625 1.03099 0.95731 1.23049 0.96417 0.97749 1.04022 1.21187 0.92224 0.97616 0.88496 1.47511 1.11448 1.47500 1.11791 1.24239 0.83639 1.04042 0.97588 1.20673 0.98864 0.98058 0.92054 1.21526 0.88503 0.90320 0.91521 0.87529 1.86752 1.46758 1.38566 1.63371 1.23016 0.94469 1.01887 1.01946 1.22989 0.93082 1.02981 1.01781 1.22880 1.03202 0.98076 0.96076 1.74093 1.23517 1.15813 0.99863 1.74511 0.96642 1.16749 1.23870 1.23546 0.95413 0.99245 0.80527 1.59278 0.97956 1.04540 1.55043 1.22693 0.90836 0.94162 1.00317 1.21711 0.93803 0.98910 1.01120 1.21703 1.03182 0.91967 0.98101 1.18704 0.87515 0.92715 0.97286 0.94127 1.21087 1.11604 1.03388 1.19434 0.92689 1.24909 0.96042 0.97787 0.94901 1.69883 1.16659 1.37880 1.28003 0.86550 0.78060 0.84012 0.79468 1.19816 1.21044 1.20926 1.22582 1.01957 0.85791 0.95131 0.87201 0.87348 0.86781 0.87754 0.88123 0.87410 0.89977 0.78447 0.87495 0.88315 0.88566 0.88767 0.88227 0.92917 0.92023 0.92724 0.91534 0.95033 0.88516 0.92948 0.91370 0.95509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 12.29 29.01 0.36 -1.02 16 2 C -0.19 -1.88 9.08 -36.03 -0.33 -2.20 16 3 C 0.13 1.47 5.45 -5.19 -0.03 1.44 16 4 N -0.49 -7.23 2.79 -115.36 -0.32 -7.55 16 5 C 0.17 2.49 7.09 -154.01 -1.09 1.40 16 6 C -0.06 -0.52 5.09 -27.88 -0.14 -0.66 16 7 C 0.14 1.28 3.15 -26.74 -0.08 1.19 16 8 H 0.11 1.20 7.90 -51.92 -0.41 0.79 16 9 O -0.55 -5.54 12.17 -35.23 -0.43 -5.97 16 10 C -0.19 -1.31 5.36 -90.62 -0.49 -1.80 16 11 C -0.17 -1.14 10.18 -26.69 -0.27 -1.41 16 12 C -0.17 -1.16 10.16 -26.69 -0.27 -1.43 16 13 N -0.29 -5.36 12.18 32.99 0.40 -4.96 16 14 N -0.28 -5.77 12.23 30.31 0.37 -5.40 16 15 C 0.37 6.96 6.65 -318.88 -2.12 4.84 16 16 N -0.44 -8.72 4.70 -174.55 -0.82 -9.54 16 17 C 0.05 0.79 4.81 -3.83 -0.02 0.77 16 18 C -0.12 -2.14 6.09 -26.65 -0.16 -2.31 16 19 C -0.11 -2.44 5.02 -26.60 -0.13 -2.57 16 20 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 21 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 22 C -0.52 -13.67 8.57 -34.44 -0.29 -13.96 16 23 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 24 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 25 N -0.89 -24.45 11.35 55.43 0.63 -23.82 16 26 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 C 0.07 1.51 4.48 -3.83 -0.02 1.49 16 31 H 0.11 1.13 7.07 -52.49 -0.37 0.76 16 32 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.10 1.40 4.64 -51.93 -0.24 1.15 16 35 H 0.10 0.88 5.50 -51.93 -0.29 0.59 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 38 H 0.37 2.36 7.68 45.56 0.35 2.71 16 39 H 0.11 0.57 8.11 -51.93 -0.42 0.15 16 40 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.79 1.99 -51.93 -0.10 0.68 16 45 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.10 2.40 6.15 -51.93 -0.32 2.08 16 50 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 51 H 0.07 1.55 8.10 -51.93 -0.42 1.13 16 52 H 0.03 0.54 5.73 -51.93 -0.30 0.24 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -31.88 401.57 -12.07 -43.95 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.54 Total: 4.93 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -5.39 Total: -13.42 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.26 Total: -51.28 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.43 Total: -5.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.88 -12.07 -43.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262938086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.123 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds