Wall clock time and date at job start Wed Apr 1 2020 04:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99964 * 2 1 4 4 N 1.46498 * 109.46947 * 124.71621 * 3 2 1 5 5 C 1.36736 * 127.13288 * 264.96133 * 4 3 2 6 6 C 1.50696 * 126.34994 * 359.96843 * 5 4 3 7 7 C 1.53003 * 109.47200 * 90.00059 * 6 5 4 8 8 H 1.09002 * 109.46691 * 305.00059 * 7 6 5 9 9 O 1.42896 * 109.46941 * 64.99857 * 7 6 5 10 10 C 1.52996 * 109.47213 * 185.00084 * 7 6 5 11 11 C 1.53001 * 117.49689 * 248.61994 * 10 7 6 12 12 C 1.52995 * 59.99893 * 252.51001 * 11 10 7 13 13 N 1.30304 * 107.30186 * 179.83998 * 5 4 3 14 14 N 1.28529 * 110.05093 * 0.43773 * 13 5 4 15 15 C 1.31210 * 109.86121 * 359.72622 * 14 13 5 16 16 N 1.38584 * 126.47071 * 180.02562 * 15 14 13 17 17 C 1.46845 * 111.00460 * 60.85333 * 16 15 14 18 18 C 1.53035 * 109.52624 * 174.16383 * 17 16 15 19 19 C 1.53117 * 109.28055 * 59.17438 * 18 17 16 20 20 C 1.53119 * 109.16223 * 302.35051 * 19 18 17 21 21 H 1.08994 * 109.50113 * 297.71134 * 20 19 18 22 22 C 1.50697 * 109.53430 * 177.61389 * 20 19 18 23 23 H 1.08005 * 119.99810 * 240.17615 * 22 20 19 24 24 C 1.37880 * 120.00271 * 60.17427 * 22 20 19 25 25 N 1.31519 * 119.99612 * 0.02562 * 24 22 20 26 26 Si 1.86796 * 120.00127 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47131 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47535 * 120.00322 * 26 24 22 29 29 H 1.48502 * 109.47217 * 240.00025 * 26 24 22 30 30 C 1.46847 * 110.99798 * 296.64009 * 16 15 14 31 31 H 1.07996 * 119.99891 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.00001 * 179.72300 * 1 2 3 33 33 H 1.08006 * 119.99871 * 179.97438 * 2 1 3 34 34 H 1.09007 * 109.46451 * 244.71233 * 3 2 1 35 35 H 1.08995 * 109.46898 * 4.71203 * 3 2 1 36 36 H 1.09004 * 109.47266 * 209.99786 * 6 5 4 37 37 H 1.08998 * 109.47254 * 329.99611 * 6 5 4 38 38 H 0.96702 * 114.00094 * 60.00443 * 9 7 6 39 39 H 1.09001 * 115.55035 * 34.32617 * 10 7 6 40 40 H 1.08993 * 117.49931 * 359.97438 * 11 10 7 41 41 H 1.09004 * 117.49602 * 145.01792 * 11 10 7 42 42 H 1.09002 * 117.50253 * 252.51109 * 12 11 10 43 43 H 1.08995 * 117.49836 * 107.49147 * 12 11 10 44 44 H 1.09002 * 109.46193 * 294.17894 * 17 16 15 45 45 H 1.09001 * 109.46074 * 54.13974 * 17 16 15 46 46 H 1.09003 * 109.49834 * 299.23305 * 18 17 16 47 47 H 1.09002 * 109.50178 * 179.11984 * 18 17 16 48 48 H 1.09001 * 109.52142 * 182.44005 * 19 18 17 49 49 H 1.09008 * 109.57172 * 62.28551 * 19 18 17 50 50 H 0.97002 * 119.99298 * 180.02562 * 25 24 22 51 51 H 1.09003 * 109.46450 * 305.85787 * 30 16 15 52 52 H 1.08996 * 109.46186 * 65.82512 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9889 1.3347 1.1353 5 6 2.7667 1.8849 2.3672 6 6 1.5108 2.5839 2.8199 7 6 0.5536 1.5632 3.4387 8 1 0.3706 0.7585 2.7265 9 8 1.1356 1.0241 4.6272 10 6 -0.7696 2.2490 3.7844 11 6 -1.1124 2.4166 5.2660 12 6 -1.8660 1.3903 4.4178 13 7 3.8412 1.6902 3.0781 14 7 4.7237 1.0674 2.3815 15 6 4.2535 0.8242 1.1809 16 7 4.9160 0.1715 0.1534 17 6 5.2640 -1.2017 0.5402 18 6 5.8609 -1.9361 -0.6625 19 6 7.1085 -1.1894 -1.1425 20 6 6.7280 0.2518 -1.4930 21 1 6.0075 0.2492 -2.3109 22 6 7.9608 1.0110 -1.9109 23 1 8.2703 1.8851 -1.3571 24 6 8.6937 0.5899 -3.0002 25 7 8.3166 -0.4742 -3.6749 26 14 10.2222 1.5307 -3.5177 27 1 10.4290 2.6812 -2.6020 28 1 11.4018 0.6307 -3.4568 29 1 10.0507 2.0285 -4.9063 30 6 6.1059 0.9227 -0.2663 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0045 33 1 1.8501 -0.9354 0.0004 34 1 2.6254 1.4002 -0.9293 35 1 1.3582 2.1318 0.0844 36 1 1.7637 3.3412 3.5620 37 1 1.0313 3.0596 1.9644 38 1 1.3259 1.6853 5.3068 39 1 -1.0809 3.0406 3.1028 40 1 -0.3955 2.0378 5.9944 41 1 -1.6493 3.3187 5.5595 42 1 -2.8988 1.6171 4.1531 43 1 -1.6447 0.3367 4.5881 44 1 5.9937 -1.1772 1.3495 45 1 4.3673 -1.7228 0.8756 46 1 5.1267 -1.9731 -1.4673 47 1 6.1335 -2.9504 -0.3708 48 1 7.5122 -1.6847 -2.0256 49 1 7.8589 -1.1860 -0.3518 50 1 8.8324 -0.7706 -4.4410 51 1 5.8208 1.9445 -0.5167 52 1 6.8317 0.9373 0.5468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262938087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:53 Heat of formation + Delta-G solvation = 75.684819 kcal Electronic energy + Delta-G solvation = -31528.263213 eV Core-core repulsion = 27530.417035 eV Total energy + Delta-G solvation = -3997.846178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.76483 -39.21491 -38.24378 -36.22548 -35.40847 -33.95108 -32.92567 -32.39756 -31.32437 -29.99126 -28.22912 -26.83713 -25.02047 -24.74638 -23.74202 -22.79867 -21.62135 -21.11443 -20.87379 -20.81149 -19.88365 -18.58650 -17.43676 -17.01955 -16.61980 -16.39885 -15.88838 -15.70822 -15.27361 -14.97546 -14.62708 -14.52310 -14.06626 -13.94715 -13.64357 -13.47317 -12.98307 -12.82309 -12.68795 -12.53391 -12.38715 -12.31684 -11.87153 -11.83152 -11.71792 -11.52208 -11.31596 -10.98622 -10.89515 -10.80518 -10.72655 -10.55700 -10.41475 -10.25853 -10.17680 -9.95266 -9.92170 -9.78988 -9.57776 -9.25019 -8.84111 -8.60013 -8.38090 -8.15609 -6.02002 -4.07827 1.71780 1.95534 2.61666 3.07941 3.28809 3.34502 3.37180 3.41752 3.96020 4.12730 4.18926 4.41215 4.43965 4.48110 4.51380 4.55308 4.59391 4.71906 4.92283 4.97920 5.05221 5.21185 5.28373 5.28652 5.35542 5.41351 5.49270 5.52889 5.60436 5.65913 5.71566 5.77472 5.83657 5.89244 5.98368 6.08601 6.23206 6.29569 6.36770 6.39352 6.39728 6.59610 6.68737 6.77966 6.90120 7.07284 7.32224 7.41270 7.41700 7.71704 7.78015 7.98839 8.09840 8.40871 8.95436 9.01427 9.56856 11.04212 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020422 B = 0.002495 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.712822 B =11218.039071 C =11552.277946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.164 4.164 3 C 0.139 3.861 4 N -0.463 5.463 5 C 0.171 3.829 6 C -0.056 4.056 7 C 0.143 3.857 8 H 0.102 0.898 9 O -0.547 6.547 10 C -0.193 4.193 11 C -0.177 4.177 12 C -0.169 4.169 13 N -0.278 5.278 14 N -0.315 5.315 15 C 0.367 3.633 16 N -0.469 5.469 17 C 0.077 3.923 18 C -0.116 4.116 19 C -0.113 4.113 20 C 0.058 3.942 21 H 0.035 0.965 22 C -0.514 4.514 23 H 0.055 0.945 24 C 0.064 3.936 25 N -0.888 5.888 26 Si 0.891 3.109 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 C 0.080 3.920 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.375 0.625 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.035 0.965 50 H 0.260 0.740 51 H 0.058 0.942 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.083 3.566 11.048 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.183 4.183 3 C 0.017 3.983 4 N -0.156 5.156 5 C -0.096 4.096 6 C -0.096 4.096 7 C 0.082 3.918 8 H 0.120 0.880 9 O -0.353 6.353 10 C -0.212 4.212 11 C -0.213 4.213 12 C -0.206 4.206 13 N -0.119 5.119 14 N -0.159 5.159 15 C 0.011 3.989 16 N -0.195 5.195 17 C -0.050 4.050 18 C -0.154 4.154 19 C -0.151 4.151 20 C 0.039 3.961 21 H 0.053 0.947 22 C -0.553 4.553 23 H 0.074 0.926 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.719 3.281 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.211 1.211 30 C -0.046 4.046 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.224 0.776 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.112 0.888 49 H 0.054 0.946 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.418 2.913 11.319 24.400 hybrid contribution 0.443 1.025 -0.725 1.331 sum -20.975 3.938 10.594 23.826 Atomic orbital electron populations 1.23894 0.95401 1.02350 0.99458 1.23134 0.96071 0.98487 1.00572 1.20915 0.91753 0.96697 0.88970 1.46339 1.13180 1.43672 1.12452 1.24290 0.99333 1.03159 0.82798 1.20674 0.89312 0.97550 1.02081 1.21351 0.88079 0.94923 0.87400 0.88007 1.86660 1.83274 1.38417 1.26937 1.23123 0.97413 1.03350 0.97281 1.22967 1.03825 1.01309 0.93243 1.22901 0.96329 0.97547 1.03776 1.73957 0.98220 1.14504 1.25173 1.74681 1.22978 1.16381 1.01838 1.22706 0.84519 0.99018 0.92647 1.58961 1.28028 1.03006 1.29541 1.22065 0.98899 0.85847 0.98182 1.21709 0.99788 0.97617 0.96248 1.21694 0.93932 0.98293 1.01196 1.18695 0.95066 0.91719 0.90621 0.94695 1.21124 1.09615 1.11906 1.12608 0.92638 1.24914 0.97593 0.95057 0.96170 1.69897 1.39388 1.23891 1.19485 0.86547 0.83126 0.80030 0.78377 1.19797 1.20997 1.21062 1.22451 0.86690 0.95963 0.99465 0.88290 0.87733 0.86365 0.86952 0.88934 0.88037 0.89345 0.77619 0.87098 0.88061 0.88744 0.88873 0.88385 0.93640 0.92503 0.91976 0.92691 0.88759 0.94586 0.93049 0.92378 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 14.12 29.01 0.41 -0.92 16 2 C -0.16 -1.68 9.85 -36.03 -0.35 -2.03 16 3 C 0.14 1.54 6.50 -5.20 -0.03 1.51 16 4 N -0.46 -6.81 2.79 -115.37 -0.32 -7.13 16 5 C 0.17 2.44 7.09 -154.01 -1.09 1.35 16 6 C -0.06 -0.51 5.24 -27.88 -0.15 -0.65 16 7 C 0.14 1.22 3.32 -26.73 -0.09 1.13 16 8 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 9 O -0.55 -5.77 12.25 -35.23 -0.43 -6.21 16 10 C -0.19 -1.20 5.71 -90.62 -0.52 -1.72 16 11 C -0.18 -1.03 9.74 -26.73 -0.26 -1.29 16 12 C -0.17 -1.07 10.19 -26.74 -0.27 -1.35 16 13 N -0.28 -5.04 12.18 32.99 0.40 -4.64 16 14 N -0.32 -6.40 12.19 30.31 0.37 -6.03 16 15 C 0.37 6.76 6.41 -318.88 -2.05 4.71 16 16 N -0.47 -8.94 4.67 -174.55 -0.82 -9.75 16 17 C 0.08 1.42 5.37 -3.84 -0.02 1.40 16 18 C -0.12 -2.18 6.09 -26.65 -0.16 -2.35 16 19 C -0.11 -2.61 5.03 -26.61 -0.13 -2.74 16 20 C 0.06 1.41 2.26 -91.69 -0.21 1.21 16 21 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 22 C -0.51 -13.90 8.56 -34.44 -0.29 -14.19 16 23 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 24 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 25 N -0.89 -24.73 11.37 55.43 0.63 -24.10 16 26 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 C 0.08 1.75 4.61 -3.83 -0.02 1.73 16 31 H 0.10 0.58 7.84 -52.49 -0.41 0.17 16 32 H 0.10 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.11 1.37 8.14 -51.92 -0.42 0.94 16 35 H 0.09 0.73 6.76 -51.93 -0.35 0.38 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.59 7.19 -51.93 -0.37 0.22 16 38 H 0.38 2.92 7.57 45.56 0.34 3.26 16 39 H 0.11 0.55 8.11 -51.93 -0.42 0.13 16 40 H 0.10 0.59 6.38 -51.93 -0.33 0.26 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 49 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 50 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 51 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 52 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 417.58 15.07 6.29 6.29 Total: -1.00 -31.89 417.58 -12.38 -44.28 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.16 Total: 3.75 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -5.33 Total: -12.55 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.26 Total: -51.66 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.43 Total: -6.21 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.89 -12.38 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262938087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.961 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds