Wall clock time and date at job start Wed Apr 1 2020 04:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99964 * 2 1 4 4 N 1.46498 * 109.46947 * 124.71621 * 3 2 1 5 5 C 1.36736 * 127.13288 * 264.96133 * 4 3 2 6 6 C 1.50696 * 126.34994 * 359.96843 * 5 4 3 7 7 C 1.53003 * 109.47200 * 90.00059 * 6 5 4 8 8 H 1.09002 * 109.46691 * 305.00059 * 7 6 5 9 9 O 1.42896 * 109.46941 * 64.99857 * 7 6 5 10 10 C 1.52996 * 109.47213 * 185.00084 * 7 6 5 11 11 C 1.53001 * 117.49689 * 248.61994 * 10 7 6 12 12 C 1.52995 * 59.99893 * 252.51001 * 11 10 7 13 13 N 1.30304 * 107.30186 * 179.83998 * 5 4 3 14 14 N 1.28529 * 110.05093 * 0.43773 * 13 5 4 15 15 C 1.31210 * 109.86121 * 359.72622 * 14 13 5 16 16 N 1.38584 * 126.47071 * 180.02562 * 15 14 13 17 17 C 1.46845 * 111.00460 * 60.85333 * 16 15 14 18 18 C 1.53035 * 109.52624 * 174.16383 * 17 16 15 19 19 C 1.53117 * 109.28055 * 59.17438 * 18 17 16 20 20 C 1.53119 * 109.16223 * 302.35051 * 19 18 17 21 21 H 1.08994 * 109.50113 * 297.71134 * 20 19 18 22 22 C 1.50697 * 109.53430 * 177.61389 * 20 19 18 23 23 H 1.08005 * 119.99810 * 240.17615 * 22 20 19 24 24 C 1.37880 * 120.00271 * 60.17427 * 22 20 19 25 25 N 1.31519 * 119.99612 * 0.02562 * 24 22 20 26 26 Si 1.86796 * 120.00127 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47131 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47535 * 120.00322 * 26 24 22 29 29 H 1.48502 * 109.47217 * 240.00025 * 26 24 22 30 30 C 1.46847 * 110.99798 * 296.64009 * 16 15 14 31 31 H 1.07996 * 119.99891 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.00001 * 179.72300 * 1 2 3 33 33 H 1.08006 * 119.99871 * 179.97438 * 2 1 3 34 34 H 1.09007 * 109.46451 * 244.71233 * 3 2 1 35 35 H 1.08995 * 109.46898 * 4.71203 * 3 2 1 36 36 H 1.09004 * 109.47266 * 209.99786 * 6 5 4 37 37 H 1.08998 * 109.47254 * 329.99611 * 6 5 4 38 38 H 0.96702 * 114.00094 * 60.00443 * 9 7 6 39 39 H 1.09001 * 115.55035 * 34.32617 * 10 7 6 40 40 H 1.08993 * 117.49931 * 359.97438 * 11 10 7 41 41 H 1.09004 * 117.49602 * 145.01792 * 11 10 7 42 42 H 1.09002 * 117.50253 * 252.51109 * 12 11 10 43 43 H 1.08995 * 117.49836 * 107.49147 * 12 11 10 44 44 H 1.09002 * 109.46193 * 294.17894 * 17 16 15 45 45 H 1.09001 * 109.46074 * 54.13974 * 17 16 15 46 46 H 1.09003 * 109.49834 * 299.23305 * 18 17 16 47 47 H 1.09002 * 109.50178 * 179.11984 * 18 17 16 48 48 H 1.09001 * 109.52142 * 182.44005 * 19 18 17 49 49 H 1.09008 * 109.57172 * 62.28551 * 19 18 17 50 50 H 0.97002 * 119.99298 * 180.02562 * 25 24 22 51 51 H 1.09003 * 109.46450 * 305.85787 * 30 16 15 52 52 H 1.08996 * 109.46186 * 65.82512 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9889 1.3347 1.1353 5 6 2.7667 1.8849 2.3672 6 6 1.5108 2.5839 2.8199 7 6 0.5536 1.5632 3.4387 8 1 0.3706 0.7585 2.7265 9 8 1.1356 1.0241 4.6272 10 6 -0.7696 2.2490 3.7844 11 6 -1.1124 2.4166 5.2660 12 6 -1.8660 1.3903 4.4178 13 7 3.8412 1.6902 3.0781 14 7 4.7237 1.0674 2.3815 15 6 4.2535 0.8242 1.1809 16 7 4.9160 0.1715 0.1534 17 6 5.2640 -1.2017 0.5402 18 6 5.8609 -1.9361 -0.6625 19 6 7.1085 -1.1894 -1.1425 20 6 6.7280 0.2518 -1.4930 21 1 6.0075 0.2492 -2.3109 22 6 7.9608 1.0110 -1.9109 23 1 8.2703 1.8851 -1.3571 24 6 8.6937 0.5899 -3.0002 25 7 8.3166 -0.4742 -3.6749 26 14 10.2222 1.5307 -3.5177 27 1 10.4290 2.6812 -2.6020 28 1 11.4018 0.6307 -3.4568 29 1 10.0507 2.0285 -4.9063 30 6 6.1059 0.9227 -0.2663 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0045 33 1 1.8501 -0.9354 0.0004 34 1 2.6254 1.4002 -0.9293 35 1 1.3582 2.1318 0.0844 36 1 1.7637 3.3412 3.5620 37 1 1.0313 3.0596 1.9644 38 1 1.3259 1.6853 5.3068 39 1 -1.0809 3.0406 3.1028 40 1 -0.3955 2.0378 5.9944 41 1 -1.6493 3.3187 5.5595 42 1 -2.8988 1.6171 4.1531 43 1 -1.6447 0.3367 4.5881 44 1 5.9937 -1.1772 1.3495 45 1 4.3673 -1.7228 0.8756 46 1 5.1267 -1.9731 -1.4673 47 1 6.1335 -2.9504 -0.3708 48 1 7.5122 -1.6847 -2.0256 49 1 7.8589 -1.1860 -0.3518 50 1 8.8324 -0.7706 -4.4410 51 1 5.8208 1.9445 -0.5167 52 1 6.8317 0.9373 0.5468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262938087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:52 Heat of formation + Delta-G solvation = 58.031063 kcal Electronic energy + Delta-G solvation = -31529.028738 eV Core-core repulsion = 27530.417035 eV Total energy + Delta-G solvation = -3998.611702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.02675 -40.03775 -39.68747 -37.18028 -36.06037 -35.71066 -33.93668 -33.82084 -32.57568 -31.85274 -29.42495 -27.76614 -27.02321 -25.62283 -25.28959 -23.36477 -23.25159 -22.40305 -21.91322 -21.40993 -20.79684 -20.32872 -18.84560 -18.09379 -17.67078 -17.44752 -17.33220 -16.64527 -16.50878 -16.03936 -15.93983 -15.72136 -15.27717 -15.24519 -14.74738 -14.60340 -14.48900 -14.31373 -14.18667 -13.58625 -13.53743 -13.33961 -13.02397 -12.89093 -12.73615 -12.64404 -12.60133 -12.46873 -12.29226 -12.16534 -11.95968 -11.85650 -11.69935 -11.43046 -11.37676 -11.15756 -11.10826 -11.04897 -10.90815 -10.76626 -10.50079 -10.42863 -9.92542 -9.78162 -8.11251 -6.24420 0.66723 0.95125 1.39354 1.41899 1.52634 1.59382 1.78025 2.41510 2.77777 2.88010 3.16459 3.21797 3.48373 3.64710 3.75287 3.83345 3.87689 3.94227 4.01444 4.08648 4.09938 4.19271 4.31076 4.32035 4.41158 4.43642 4.47192 4.52954 4.57057 4.61133 4.74089 4.78539 4.81225 4.87060 4.92116 4.96829 5.04188 5.07746 5.09382 5.10661 5.26200 5.29454 5.33959 5.42918 5.56495 5.60396 5.62679 5.68541 5.77852 5.96831 6.09406 6.33158 6.35977 6.81403 6.84333 7.43091 7.71277 8.93870 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020422 B = 0.002495 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.712822 B =11218.039071 C =11552.277946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.196 4.196 3 C 0.135 3.865 4 N -0.457 5.457 5 C 0.195 3.805 6 C -0.055 4.055 7 C 0.147 3.853 8 H 0.090 0.910 9 O -0.573 6.573 10 C -0.183 4.183 11 C -0.176 4.176 12 C -0.175 4.175 13 N -0.319 5.319 14 N -0.354 5.354 15 C 0.344 3.656 16 N -0.460 5.460 17 C 0.083 3.917 18 C -0.103 4.103 19 C -0.106 4.106 20 C 0.061 3.939 21 H 0.011 0.989 22 C -0.537 4.537 23 H 0.046 0.954 24 C 0.021 3.979 25 N -0.910 5.910 26 Si 0.952 3.048 27 H -0.273 1.273 28 H -0.279 1.279 29 H -0.277 1.277 30 C 0.100 3.900 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.385 0.615 39 H 0.134 0.866 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.030 0.970 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.022 0.978 50 H 0.262 0.738 51 H 0.050 0.950 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.061 4.829 11.207 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.215 4.215 3 C 0.015 3.985 4 N -0.149 5.149 5 C -0.074 4.074 6 C -0.095 4.095 7 C 0.087 3.913 8 H 0.108 0.892 9 O -0.381 6.381 10 C -0.202 4.202 11 C -0.213 4.213 12 C -0.212 4.212 13 N -0.158 5.158 14 N -0.197 5.197 15 C -0.013 4.013 16 N -0.186 5.186 17 C -0.044 4.044 18 C -0.141 4.141 19 C -0.144 4.144 20 C 0.042 3.958 21 H 0.029 0.971 22 C -0.576 4.576 23 H 0.064 0.936 24 C -0.179 4.179 25 N -0.549 5.549 26 Si 0.778 3.222 27 H -0.197 1.197 28 H -0.205 1.205 29 H -0.203 1.203 30 C -0.027 4.027 31 H 0.146 0.854 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.235 0.765 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.049 0.951 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.041 0.959 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -24.423 4.176 11.478 27.307 hybrid contribution 1.227 0.634 -0.726 1.561 sum -23.196 4.811 10.752 26.016 Atomic orbital electron populations 1.24181 0.94292 1.04177 0.94959 1.22891 0.96926 0.97010 1.04693 1.21216 0.91571 0.98801 0.86948 1.46562 1.12324 1.42446 1.13568 1.25290 0.99645 1.00592 0.81839 1.21015 0.87093 0.97546 1.03819 1.21311 0.88962 0.94486 0.86526 0.89168 1.86630 1.83701 1.39792 1.27951 1.23034 0.95735 1.03474 0.97927 1.23042 1.03621 1.01594 0.93038 1.22925 0.97137 0.96825 1.04322 1.73872 0.99527 1.16260 1.26176 1.74551 1.24765 1.17495 1.02911 1.22563 0.86095 1.00495 0.92165 1.58865 1.26477 1.02965 1.30295 1.22016 0.99309 0.85772 0.97290 1.21584 0.97717 0.98361 0.96439 1.21507 0.95484 0.97773 0.99655 1.18563 0.93797 0.92656 0.90749 0.97121 1.21412 1.10924 1.12129 1.13126 0.93593 1.25618 1.00237 0.95880 0.96131 1.70005 1.40381 1.24763 1.19705 0.85596 0.79721 0.78783 0.78091 1.19732 1.20484 1.20254 1.22023 0.87353 0.95694 0.97616 0.85357 0.86846 0.88994 0.88642 0.84873 0.86713 0.85814 0.76499 0.84786 0.88573 0.87393 0.87528 0.90033 0.95121 0.90493 0.91726 0.90175 0.91262 0.95892 0.92826 0.93107 0.96222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 14.12 67.77 0.96 -0.68 16 2 C -0.20 -3.68 9.85 25.64 0.25 -3.43 16 3 C 0.14 2.75 6.50 85.63 0.56 3.31 16 4 N -0.46 -13.08 2.79 -518.92 -1.45 -14.53 16 5 C 0.19 5.28 7.09 137.64 0.98 6.26 16 6 C -0.06 -0.81 5.24 29.85 0.16 -0.65 16 7 C 0.15 2.10 3.32 30.59 0.10 2.20 16 8 H 0.09 1.51 7.94 -2.39 -0.02 1.50 16 9 O -0.57 -11.36 12.25 -148.98 -1.82 -13.19 16 10 C -0.18 -1.59 5.71 -10.80 -0.06 -1.65 16 11 C -0.18 -1.55 9.74 30.59 0.30 -1.25 16 12 C -0.18 -1.75 10.19 30.59 0.31 -1.44 16 13 N -0.32 -11.62 12.18 -49.54 -0.60 -12.22 16 14 N -0.35 -14.79 12.19 -58.01 -0.71 -15.49 16 15 C 0.34 12.95 6.41 260.11 1.67 14.62 16 16 N -0.46 -18.13 4.67 -706.16 -3.30 -21.43 16 17 C 0.08 3.12 5.37 86.33 0.46 3.58 16 18 C -0.10 -3.94 6.09 30.65 0.19 -3.76 16 19 C -0.11 -5.08 5.03 30.67 0.15 -4.92 16 20 C 0.06 3.13 2.26 -11.49 -0.03 3.10 16 21 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 22 C -0.54 -30.14 8.56 25.60 0.22 -29.92 16 23 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 24 C 0.02 1.15 5.30 84.65 0.45 1.60 16 25 N -0.91 -51.73 11.37 21.45 0.24 -51.49 16 26 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 27 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 30 C 0.10 4.59 4.61 86.33 0.40 4.99 16 31 H 0.13 0.79 7.84 -2.91 -0.02 0.76 16 32 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.09 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.13 1.55 6.76 -2.39 -0.02 1.53 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.12 0.99 7.19 -2.39 -0.02 0.97 16 38 H 0.38 5.54 7.57 -74.06 -0.56 4.98 16 39 H 0.13 0.60 8.11 -2.39 -0.02 0.58 16 40 H 0.10 0.95 6.38 -2.39 -0.02 0.93 16 41 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.07 3.67 6.17 -2.39 -0.01 3.66 16 49 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 51 H 0.05 2.35 8.10 -2.39 -0.02 2.33 16 52 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.35 417.58 1.79 -71.56 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.34 Total: 18.86 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 7.06 Total: -8.04 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -5.81 Total: -115.16 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -1.82 Total: -13.19 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.35 1.79 -71.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262938087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.587 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds