Wall clock time and date at job start Wed Apr 1 2020 04:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 N 1.46507 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.39928 * 125.75472 * 269.69138 * 4 3 2 6 6 C 1.30449 * 108.89803 * 179.84413 * 5 4 3 7 7 C 1.41287 * 108.02410 * 0.40979 * 6 5 4 8 8 C 1.47426 * 126.41633 * 179.72013 * 7 6 5 9 9 O 1.21605 * 119.99679 * 174.31409 * 8 7 6 10 10 N 1.34775 * 120.00044 * 354.31266 * 8 7 6 11 11 C 1.46505 * 119.99837 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46697 * 179.97438 * 11 10 8 13 13 N 1.46502 * 109.47057 * 179.97438 * 12 11 10 14 14 C 1.36947 * 119.99712 * 270.00120 * 13 12 11 15 15 H 1.07996 * 119.99213 * 137.66344 * 14 13 12 16 16 C 1.38806 * 120.00314 * 317.66161 * 14 13 12 17 17 N 1.31620 * 120.00001 * 343.07475 * 16 14 13 18 18 Si 1.86800 * 120.00090 * 163.07243 * 16 14 13 19 19 H 1.48497 * 109.46683 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46716 * 119.99874 * 18 16 14 21 21 H 1.48497 * 109.46911 * 239.99869 * 18 16 14 22 22 C 1.46494 * 120.00289 * 90.00065 * 13 12 11 23 23 C 1.53001 * 117.50046 * 192.73490 * 22 13 12 24 24 C 1.52999 * 59.99978 * 252.50668 * 23 22 13 25 25 C 1.34256 * 125.75347 * 89.99506 * 4 3 2 26 26 C 1.50699 * 126.29335 * 359.96296 * 25 4 3 27 27 C 1.52999 * 117.50225 * 129.88111 * 26 25 4 28 28 C 1.53002 * 117.50078 * 61.21754 * 26 25 4 29 29 H 1.09009 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47258 * 60.00513 * 1 2 3 31 31 H 1.08997 * 109.47343 * 300.00287 * 1 2 3 32 32 H 1.09000 * 109.47258 * 119.99487 * 2 1 3 33 33 H 1.09005 * 109.47619 * 239.99545 * 2 1 3 34 34 H 1.09000 * 109.47034 * 299.99191 * 3 2 1 35 35 H 1.08998 * 109.47763 * 59.99777 * 3 2 1 36 36 H 1.08007 * 125.98782 * 180.12512 * 6 5 4 37 37 H 0.97002 * 119.99962 * 359.97438 * 10 8 7 38 38 H 1.08995 * 109.46745 * 299.99323 * 11 10 8 39 39 H 1.08991 * 109.47010 * 59.99865 * 11 10 8 40 40 H 1.08998 * 109.47620 * 299.99709 * 12 11 10 41 41 H 1.09005 * 109.47108 * 60.00184 * 12 11 10 42 42 H 0.96996 * 120.00421 * 185.01851 * 17 16 14 43 43 H 1.09009 * 115.54716 * 338.44160 * 22 13 12 44 44 H 1.08992 * 117.49999 * 0.02562 * 23 22 13 45 45 H 1.09005 * 117.49855 * 145.02173 * 23 22 13 46 46 H 1.09001 * 117.50250 * 252.51241 * 24 23 22 47 47 H 1.09004 * 117.51891 * 107.47914 * 24 23 22 48 48 H 1.09008 * 115.54958 * 275.54802 * 26 25 4 49 49 H 1.09000 * 117.50004 * 359.97438 * 27 26 25 50 50 H 1.09001 * 117.50392 * 145.02094 * 27 26 25 51 51 H 1.09004 * 117.49885 * 214.98276 * 28 26 25 52 52 H 1.08997 * 117.49448 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 7 4.3221 1.4488 1.1365 6 6 5.5707 1.4434 0.7588 7 6 5.6001 1.4429 -0.6538 8 6 6.8044 1.4433 -1.5041 9 8 6.6967 1.3385 -2.7108 10 7 8.0247 1.5600 -0.9440 11 6 9.2215 1.5610 -1.7891 12 6 10.4658 1.7056 -0.9108 13 7 11.6626 1.7059 -1.7557 14 6 12.2907 0.5261 -2.0538 15 1 12.6459 0.3420 -3.0569 16 6 12.4707 -0.4331 -1.0667 17 7 12.3526 -0.1023 0.2018 18 14 12.8805 -2.1935 -1.5385 19 1 12.9574 -2.3043 -3.0173 20 1 14.1879 -2.5732 -0.9455 21 1 11.8226 -3.1018 -1.0277 22 6 12.1875 2.9684 -2.2818 23 6 13.2438 2.8890 -3.3858 24 6 13.6459 3.3113 -1.9712 25 6 4.2899 1.4423 -1.0886 26 6 3.8260 1.4411 -2.5224 27 6 4.4358 2.4823 -3.4631 28 6 2.9861 2.6299 -2.9942 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 6.4312 1.4443 1.4115 37 1 8.1106 1.6440 0.0185 38 1 9.2750 0.6245 -2.3442 39 1 9.1718 2.3956 -2.4883 40 1 10.4121 2.6422 -0.3559 41 1 10.5157 0.8711 -0.2112 42 1 12.5494 -0.7534 0.8932 43 1 11.4749 3.7922 -2.3248 44 1 13.5479 1.8975 -3.7209 45 1 13.2264 3.6606 -4.1555 46 1 13.8929 4.3607 -1.8103 47 1 14.2147 2.5977 -1.3751 48 1 3.5913 0.4619 -2.9398 49 1 5.1723 3.1684 -3.0449 50 1 4.6020 2.1883 -4.4995 51 1 2.1991 2.4327 -3.7222 52 1 2.7688 3.4125 -2.2673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266616019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:50 Heat of formation + Delta-G solvation = 105.526087 kcal Electronic energy + Delta-G solvation = -30469.148064 eV Core-core repulsion = 26472.595901 eV Total energy + Delta-G solvation = -3996.552163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.61547 -38.71168 -37.17141 -36.98266 -35.65292 -34.55439 -33.09807 -31.82725 -30.84906 -30.13908 -27.80467 -26.49575 -24.50090 -23.67131 -22.79578 -22.22892 -22.06757 -21.50570 -21.20573 -20.08785 -19.79551 -19.22798 -17.61361 -16.43347 -16.06835 -15.75872 -15.49240 -15.31666 -15.21578 -15.02209 -14.60948 -14.56311 -14.40617 -13.84434 -13.83545 -13.46881 -13.20562 -12.66587 -12.61620 -12.51869 -12.38732 -12.11032 -11.89419 -11.79018 -11.63554 -11.51125 -11.32272 -11.24613 -10.96966 -10.78543 -10.70836 -10.66116 -10.30037 -10.26409 -10.10992 -9.81250 -9.58533 -9.50723 -9.39103 -9.23207 -8.70290 -8.52781 -8.28447 -6.43551 -5.87027 -3.49695 1.49846 2.16227 2.23066 3.32073 3.41344 3.44435 3.58762 3.76198 3.79424 4.18101 4.24715 4.40268 4.42605 4.63958 4.70187 4.75287 4.81420 4.98105 5.00618 5.02956 5.07397 5.22043 5.25731 5.30162 5.36102 5.39469 5.42741 5.54037 5.61689 5.75067 5.76869 5.85087 5.95492 5.97749 6.10849 6.12061 6.17440 6.28492 6.32440 6.42166 6.54757 6.58677 6.67219 6.73851 6.98454 7.04223 7.13747 7.29000 7.49559 7.53843 7.81306 8.10148 8.51597 8.78084 9.13088 9.71851 10.31758 11.13895 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.002431 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.522733 B =11515.020169 C =12322.710248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.128 3.872 4 N -0.357 5.357 5 N -0.299 5.299 6 C 0.081 3.919 7 C -0.282 4.282 8 C 0.585 3.415 9 O -0.546 6.546 10 N -0.718 5.718 11 C 0.103 3.897 12 C 0.143 3.857 13 N -0.546 5.546 14 C -0.264 4.264 15 H 0.064 0.936 16 C 0.021 3.979 17 N -0.887 5.887 18 Si 0.899 3.101 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.286 1.286 22 C 0.124 3.876 23 C -0.203 4.203 24 C -0.218 4.218 25 C 0.180 3.820 26 C -0.102 4.102 27 C -0.111 4.111 28 C -0.189 4.189 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.191 0.809 37 H 0.394 0.606 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.098 0.902 42 H 0.257 0.743 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.124 0.876 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.100 0.900 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.219 4.945 -0.367 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.007 3.993 4 N -0.136 5.136 5 N -0.118 5.118 6 C -0.106 4.106 7 C -0.297 4.297 8 C 0.372 3.628 9 O -0.424 6.424 10 N -0.368 5.368 11 C -0.022 4.022 12 C 0.016 3.984 13 N -0.262 5.262 14 C -0.394 4.394 15 H 0.081 0.919 16 C -0.180 4.180 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.213 1.213 22 C 0.014 3.986 23 C -0.241 4.241 24 C -0.258 4.258 25 C 0.048 3.952 26 C -0.122 4.122 27 C -0.149 4.149 28 C -0.226 4.226 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.208 0.792 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.142 0.858 49 H 0.117 0.883 50 H 0.121 0.879 51 H 0.119 0.881 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.270 4.733 -0.029 23.747 hybrid contribution 1.060 -1.032 -0.158 1.487 sum -22.210 3.702 -0.187 22.517 Atomic orbital electron populations 1.21689 0.94169 1.02573 1.02208 1.21920 0.96751 0.95662 1.03612 1.21891 0.73927 0.98785 1.04655 1.48472 1.06541 1.55418 1.03179 1.77168 1.01947 1.25384 1.07313 1.24082 0.95325 0.97172 0.94039 1.20162 0.93140 1.22897 0.93469 1.17185 0.82178 0.76503 0.86970 1.90741 1.86627 1.50883 1.14184 1.45866 1.05976 1.74116 1.10877 1.22287 0.83917 1.01464 0.94567 1.21023 0.83066 1.01464 0.92845 1.43147 1.25108 1.00717 1.57245 1.19016 1.34874 0.91817 0.93708 0.91872 1.25372 0.98136 0.99387 0.95115 1.69886 1.50035 1.34128 0.98787 0.86291 0.77661 0.84806 0.78479 1.19880 1.21499 1.21263 1.21207 0.88276 0.90256 0.98811 1.23068 1.07609 1.01915 0.91543 1.23284 1.04342 0.99385 0.98827 1.20522 0.89790 0.95850 0.89034 1.20388 1.06638 0.96510 0.88616 1.22766 0.93613 0.99331 0.99182 1.23211 0.96301 0.99220 1.03898 0.91893 0.92249 0.92262 0.90866 0.91175 0.88524 0.88611 0.79236 0.77236 0.91697 0.93186 0.95005 0.88469 0.93321 0.89345 0.88672 0.90908 0.91317 0.88880 0.85802 0.88323 0.87891 0.88121 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.15 0.37 -0.36 16 2 C -0.14 -1.00 6.26 -26.74 -0.17 -1.17 16 3 C 0.13 1.01 6.21 -4.04 -0.03 0.98 16 4 N -0.36 -4.17 3.58 -56.60 -0.20 -4.37 16 5 N -0.30 -3.99 12.50 30.86 0.39 -3.61 16 6 C 0.08 1.06 11.50 -16.98 -0.20 0.87 16 7 C -0.28 -4.14 6.10 -105.07 -0.64 -4.78 16 8 C 0.59 10.03 7.65 -12.52 -0.10 9.93 16 9 O -0.55 -10.62 13.52 5.27 0.07 -10.55 16 10 N -0.72 -12.07 5.55 -61.39 -0.34 -12.41 16 11 C 0.10 2.05 6.00 -4.04 -0.02 2.02 16 12 C 0.14 3.12 5.44 -4.04 -0.02 3.10 16 13 N -0.55 -13.09 2.75 -165.66 -0.46 -13.54 16 14 C -0.26 -6.96 8.47 -15.06 -0.13 -7.09 16 15 H 0.06 1.69 6.58 -52.49 -0.35 1.35 16 16 C 0.02 0.56 5.02 -17.43 -0.09 0.47 16 17 N -0.89 -24.37 11.53 55.49 0.64 -23.73 16 18 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.12 2.63 6.60 -67.93 -0.45 2.18 16 23 C -0.20 -4.02 9.85 -26.73 -0.26 -4.28 16 24 C -0.22 -4.46 10.19 -26.73 -0.27 -4.73 16 25 C 0.18 2.34 6.44 -81.60 -0.53 1.81 16 26 C -0.10 -1.13 5.19 -91.77 -0.48 -1.61 16 27 C -0.11 -1.29 8.01 -26.69 -0.21 -1.50 16 28 C -0.19 -1.61 8.99 -26.69 -0.24 -1.85 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.60 6.45 -51.93 -0.34 0.27 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.19 1.97 7.53 -52.48 -0.40 1.57 16 37 H 0.39 5.69 7.46 -40.82 -0.30 5.39 16 38 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 41 H 0.10 2.38 5.70 -51.93 -0.30 2.08 16 42 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 2.05 6.44 -51.93 -0.33 1.71 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.09 2.18 8.14 -51.93 -0.42 1.75 16 48 H 0.12 1.31 8.14 -51.92 -0.42 0.89 16 49 H 0.10 1.35 7.55 -51.93 -0.39 0.95 16 50 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 51 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.09 0.75 7.98 -51.93 -0.41 0.34 16 LS Contribution 422.38 15.07 6.37 6.37 Total: -1.00 -31.14 422.38 -10.74 -41.88 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -8.71 Total: 9.75 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -3.46 Total: -6.00 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.03 Total: -57.66 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -31.14 -10.74 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266616019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.404 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds