Wall clock time and date at job start Wed Apr 1 2020 04:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 N 1.46507 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.39928 * 125.75472 * 269.69138 * 4 3 2 6 6 C 1.30449 * 108.89803 * 179.84413 * 5 4 3 7 7 C 1.41287 * 108.02410 * 0.40979 * 6 5 4 8 8 C 1.47426 * 126.41633 * 179.72013 * 7 6 5 9 9 O 1.21605 * 119.99679 * 174.31409 * 8 7 6 10 10 N 1.34775 * 120.00044 * 354.31266 * 8 7 6 11 11 C 1.46505 * 119.99837 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46697 * 179.97438 * 11 10 8 13 13 N 1.46502 * 109.47057 * 179.97438 * 12 11 10 14 14 C 1.36947 * 119.99712 * 270.00120 * 13 12 11 15 15 H 1.07996 * 119.99213 * 137.66344 * 14 13 12 16 16 C 1.38806 * 120.00314 * 317.66161 * 14 13 12 17 17 N 1.31620 * 120.00001 * 343.07475 * 16 14 13 18 18 Si 1.86800 * 120.00090 * 163.07243 * 16 14 13 19 19 H 1.48497 * 109.46683 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46716 * 119.99874 * 18 16 14 21 21 H 1.48497 * 109.46911 * 239.99869 * 18 16 14 22 22 C 1.46494 * 120.00289 * 90.00065 * 13 12 11 23 23 C 1.53001 * 117.50046 * 192.73490 * 22 13 12 24 24 C 1.52999 * 59.99978 * 252.50668 * 23 22 13 25 25 C 1.34256 * 125.75347 * 89.99506 * 4 3 2 26 26 C 1.50699 * 126.29335 * 359.96296 * 25 4 3 27 27 C 1.52999 * 117.50225 * 129.88111 * 26 25 4 28 28 C 1.53002 * 117.50078 * 61.21754 * 26 25 4 29 29 H 1.09009 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47258 * 60.00513 * 1 2 3 31 31 H 1.08997 * 109.47343 * 300.00287 * 1 2 3 32 32 H 1.09000 * 109.47258 * 119.99487 * 2 1 3 33 33 H 1.09005 * 109.47619 * 239.99545 * 2 1 3 34 34 H 1.09000 * 109.47034 * 299.99191 * 3 2 1 35 35 H 1.08998 * 109.47763 * 59.99777 * 3 2 1 36 36 H 1.08007 * 125.98782 * 180.12512 * 6 5 4 37 37 H 0.97002 * 119.99962 * 359.97438 * 10 8 7 38 38 H 1.08995 * 109.46745 * 299.99323 * 11 10 8 39 39 H 1.08991 * 109.47010 * 59.99865 * 11 10 8 40 40 H 1.08998 * 109.47620 * 299.99709 * 12 11 10 41 41 H 1.09005 * 109.47108 * 60.00184 * 12 11 10 42 42 H 0.96996 * 120.00421 * 185.01851 * 17 16 14 43 43 H 1.09009 * 115.54716 * 338.44160 * 22 13 12 44 44 H 1.08992 * 117.49999 * 0.02562 * 23 22 13 45 45 H 1.09005 * 117.49855 * 145.02173 * 23 22 13 46 46 H 1.09001 * 117.50250 * 252.51241 * 24 23 22 47 47 H 1.09004 * 117.51891 * 107.47914 * 24 23 22 48 48 H 1.09008 * 115.54958 * 275.54802 * 26 25 4 49 49 H 1.09000 * 117.50004 * 359.97438 * 27 26 25 50 50 H 1.09001 * 117.50392 * 145.02094 * 27 26 25 51 51 H 1.09004 * 117.49885 * 214.98276 * 28 26 25 52 52 H 1.08997 * 117.49448 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 7 4.3221 1.4488 1.1365 6 6 5.5707 1.4434 0.7588 7 6 5.6001 1.4429 -0.6538 8 6 6.8044 1.4433 -1.5041 9 8 6.6967 1.3385 -2.7108 10 7 8.0247 1.5600 -0.9440 11 6 9.2215 1.5610 -1.7891 12 6 10.4658 1.7056 -0.9108 13 7 11.6626 1.7059 -1.7557 14 6 12.2907 0.5261 -2.0538 15 1 12.6459 0.3420 -3.0569 16 6 12.4707 -0.4331 -1.0667 17 7 12.3526 -0.1023 0.2018 18 14 12.8805 -2.1935 -1.5385 19 1 12.9574 -2.3043 -3.0173 20 1 14.1879 -2.5732 -0.9455 21 1 11.8226 -3.1018 -1.0277 22 6 12.1875 2.9684 -2.2818 23 6 13.2438 2.8890 -3.3858 24 6 13.6459 3.3113 -1.9712 25 6 4.2899 1.4423 -1.0886 26 6 3.8260 1.4411 -2.5224 27 6 4.4358 2.4823 -3.4631 28 6 2.9861 2.6299 -2.9942 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 6.4312 1.4443 1.4115 37 1 8.1106 1.6440 0.0185 38 1 9.2750 0.6245 -2.3442 39 1 9.1718 2.3956 -2.4883 40 1 10.4121 2.6422 -0.3559 41 1 10.5157 0.8711 -0.2112 42 1 12.5494 -0.7534 0.8932 43 1 11.4749 3.7922 -2.3248 44 1 13.5479 1.8975 -3.7209 45 1 13.2264 3.6606 -4.1555 46 1 13.8929 4.3607 -1.8103 47 1 14.2147 2.5977 -1.3751 48 1 3.5913 0.4619 -2.9398 49 1 5.1723 3.1684 -3.0449 50 1 4.6020 2.1883 -4.4995 51 1 2.1991 2.4327 -3.7222 52 1 2.7688 3.4125 -2.2673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266616019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:49 Heat of formation + Delta-G solvation = 88.488586 kcal Electronic energy + Delta-G solvation = -30469.886865 eV Core-core repulsion = 26472.595901 eV Total energy + Delta-G solvation = -3997.290965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.60874 -40.10196 -38.75248 -37.98483 -36.33092 -36.12107 -34.86768 -32.88796 -32.40170 -31.26714 -29.33186 -27.43649 -26.23998 -24.76078 -23.63023 -23.44417 -22.95251 -22.83653 -22.68292 -21.58669 -21.16965 -20.33246 -18.78178 -18.03542 -17.26959 -17.17899 -16.93659 -16.55779 -16.21116 -16.19139 -16.00208 -15.76673 -15.55017 -15.36367 -14.77824 -14.61129 -14.36480 -14.32953 -13.90316 -13.73284 -13.25220 -13.21176 -13.02642 -12.96816 -12.86835 -12.66841 -12.48293 -12.41552 -12.31686 -12.26774 -12.09751 -11.90765 -11.82554 -11.64278 -11.49053 -11.33507 -11.17516 -10.92548 -10.71279 -10.52491 -10.40122 -10.00260 -9.56254 -8.37521 -7.86532 -5.53424 0.46810 1.13851 1.30640 1.41047 1.45876 1.54416 2.33383 2.51250 2.51612 2.77702 3.16734 3.34844 3.42050 3.46050 3.63789 3.83312 3.86957 3.95031 3.97105 4.08483 4.22014 4.25227 4.33912 4.37896 4.42048 4.44628 4.49337 4.55413 4.58960 4.65137 4.73738 4.79058 4.79662 4.88890 4.97829 4.99807 5.07425 5.08990 5.11850 5.13471 5.23982 5.28654 5.33781 5.37837 5.38553 5.55365 5.58977 5.70019 5.79059 5.85931 6.48534 6.50407 6.77283 7.15784 7.42824 7.80946 8.34591 9.09680 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.002431 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.522733 B =11515.020169 C =12322.710248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.349 5.349 5 N -0.315 5.315 6 C 0.082 3.918 7 C -0.312 4.312 8 C 0.585 3.415 9 O -0.574 6.574 10 N -0.714 5.714 11 C 0.128 3.872 12 C 0.152 3.848 13 N -0.563 5.563 14 C -0.267 4.267 15 H 0.053 0.947 16 C -0.022 4.022 17 N -0.910 5.910 18 Si 0.951 3.049 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.289 1.289 22 C 0.103 3.897 23 C -0.190 4.190 24 C -0.212 4.212 25 C 0.185 3.815 26 C -0.115 4.115 27 C -0.132 4.132 28 C -0.149 4.149 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.209 0.791 37 H 0.406 0.594 38 H 0.031 0.969 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.254 0.746 43 H 0.114 0.886 44 H 0.072 0.928 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.057 0.943 48 H 0.130 0.870 49 H 0.072 0.928 50 H 0.101 0.899 51 H 0.131 0.869 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.543 6.070 -0.785 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.000 4.000 4 N -0.128 5.128 5 N -0.134 5.134 6 C -0.105 4.105 7 C -0.327 4.327 8 C 0.373 3.627 9 O -0.454 6.454 10 N -0.365 5.365 11 C 0.001 3.999 12 C 0.025 3.975 13 N -0.281 5.281 14 C -0.398 4.398 15 H 0.070 0.930 16 C -0.221 4.221 17 N -0.553 5.553 18 Si 0.779 3.221 19 H -0.196 1.196 20 H -0.214 1.214 21 H -0.215 1.215 22 C -0.005 4.005 23 C -0.228 4.228 24 C -0.253 4.253 25 C 0.051 3.949 26 C -0.135 4.135 27 C -0.170 4.170 28 C -0.186 4.186 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.226 0.774 37 H 0.242 0.758 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.131 0.869 44 H 0.091 0.909 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.076 0.924 48 H 0.148 0.852 49 H 0.090 0.910 50 H 0.119 0.881 51 H 0.149 0.851 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.618 5.873 -0.423 26.286 hybrid contribution 1.721 -1.333 -0.055 2.178 sum -23.897 4.540 -0.478 24.329 Atomic orbital electron populations 1.21666 0.92138 1.03042 1.03274 1.21864 0.98381 0.94809 1.02342 1.22296 0.71683 0.99661 1.06332 1.48788 1.07732 1.53938 1.02305 1.77130 1.02130 1.25883 1.08290 1.24378 0.96012 0.96501 0.93634 1.20042 0.92869 1.25757 0.93984 1.17523 0.82679 0.75552 0.86916 1.90718 1.87047 1.52175 1.15503 1.45696 1.05206 1.74329 1.11238 1.21752 0.84495 0.99495 0.94118 1.20866 0.83201 1.00974 0.92469 1.43334 1.25911 1.01187 1.57643 1.19090 1.34349 0.93083 0.93235 0.92957 1.25920 0.98803 1.02168 0.95187 1.69985 1.51266 1.34791 0.99275 0.85475 0.77164 0.81306 0.78150 1.19616 1.21380 1.21528 1.21517 0.89213 0.89929 0.99833 1.23067 1.05979 1.01832 0.91955 1.23196 1.03011 1.00271 0.98785 1.20788 0.89533 0.94367 0.90177 1.20491 1.08052 0.97554 0.87411 1.22654 0.95577 0.99753 0.99047 1.23304 0.94865 0.97108 1.03289 0.91771 0.90820 0.91552 0.92680 0.91940 0.86277 0.87476 0.77403 0.75817 0.95030 0.93384 0.93589 0.91067 0.93611 0.86869 0.90905 0.87389 0.88101 0.92440 0.85239 0.90983 0.88086 0.85073 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.91 71.98 0.71 -0.32 16 2 C -0.14 -1.69 6.26 30.59 0.19 -1.50 16 3 C 0.12 1.59 6.21 86.38 0.54 2.12 16 4 N -0.35 -7.65 3.58 -332.99 -1.19 -8.85 16 5 N -0.32 -8.12 12.50 -56.27 -0.70 -8.82 16 6 C 0.08 2.11 11.50 85.65 0.99 3.09 16 7 C -0.31 -9.16 6.10 -20.15 -0.12 -9.28 16 8 C 0.58 20.49 7.65 86.66 0.66 21.16 16 9 O -0.57 -23.02 13.52 -4.05 -0.05 -23.08 16 10 N -0.71 -24.49 5.55 -466.39 -2.59 -27.08 16 11 C 0.13 5.21 6.00 86.38 0.52 5.73 16 12 C 0.15 6.73 5.44 86.38 0.47 7.20 16 13 N -0.56 -27.37 2.75 -678.03 -1.86 -29.23 16 14 C -0.27 -14.38 8.47 84.03 0.71 -13.67 16 15 H 0.05 2.89 6.58 -2.91 -0.02 2.87 16 16 C -0.02 -1.21 5.02 84.86 0.43 -0.78 16 17 N -0.91 -51.18 11.53 21.65 0.25 -50.93 16 18 Si 0.95 44.60 29.59 68.60 2.03 46.63 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 C 0.10 4.30 6.60 44.99 0.30 4.60 16 23 C -0.19 -7.29 9.85 30.59 0.30 -6.99 16 24 C -0.21 -8.48 10.19 30.59 0.31 -8.16 16 25 C 0.19 4.66 6.44 42.14 0.27 4.93 16 26 C -0.12 -2.42 5.19 -11.54 -0.06 -2.48 16 27 C -0.13 -3.00 8.01 30.62 0.25 -2.76 16 28 C -0.15 -2.10 8.99 30.62 0.28 -1.83 16 29 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.12 1.05 6.45 -2.39 -0.02 1.04 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.21 4.22 7.53 -2.91 -0.02 4.20 16 37 H 0.41 11.88 7.46 -92.71 -0.69 11.18 16 38 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 41 H 0.07 3.59 5.70 -2.38 -0.01 3.57 16 42 H 0.25 13.85 8.32 -92.71 -0.77 13.08 16 43 H 0.11 4.13 8.14 -2.38 -0.02 4.11 16 44 H 0.07 3.13 6.44 -2.39 -0.02 3.12 16 45 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 46 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 47 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 48 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 49 H 0.07 2.02 7.55 -2.39 -0.02 2.00 16 50 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 52 H 0.10 1.29 7.98 -2.39 -0.02 1.27 16 Total: -1.00 -69.28 422.38 2.84 -66.44 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.22 Total: 33.85 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 6.73 Total: 1.06 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -6.09 Total: -124.91 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.28 2.84 -66.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266616019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.926 kcal (2) G-P(sol) polarization free energy of solvation -69.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds