Wall clock time and date at job start Wed Apr 1 2020 04:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99844 * 2 1 4 4 N 1.46499 * 109.47318 * 124.99737 * 3 2 1 5 5 C 1.36732 * 127.14002 * 90.15371 * 4 3 2 6 6 C 1.50702 * 126.34277 * 359.94833 * 5 4 3 7 7 C 1.53001 * 109.47452 * 90.00173 * 6 5 4 8 8 C 1.53787 * 113.60846 * 272.49357 * 7 6 5 9 9 C 1.53782 * 87.07981 * 220.01722 * 8 7 6 10 10 O 1.42897 * 113.69157 * 139.98983 * 9 8 7 11 11 C 1.53782 * 113.61230 * 174.99811 * 7 6 5 12 12 N 1.30289 * 107.30952 * 179.97438 * 5 4 3 13 13 N 1.28529 * 110.05156 * 359.97438 * 12 5 4 14 14 C 1.31220 * 109.86044 * 359.74631 * 13 12 5 15 15 N 1.38578 * 126.47290 * 180.25290 * 14 13 12 16 16 C 1.46845 * 111.00035 * 62.96531 * 15 14 13 17 17 C 1.53035 * 109.52450 * 174.15603 * 16 15 14 18 18 C 1.53121 * 109.27755 * 59.18305 * 17 16 15 19 19 C 1.53125 * 109.15772 * 302.34438 * 18 17 16 20 20 H 1.09008 * 109.50025 * 297.71518 * 19 18 17 21 21 C 1.50700 * 109.53410 * 177.61833 * 19 18 17 22 22 H 1.07998 * 119.99395 * 240.17043 * 21 19 18 23 23 C 1.37878 * 120.00296 * 60.17363 * 21 19 18 24 24 N 1.31520 * 119.99800 * 0.02562 * 23 21 19 25 25 Si 1.86790 * 119.99971 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47328 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46921 * 120.00211 * 25 23 21 28 28 H 1.48496 * 109.47383 * 240.00195 * 25 23 21 29 29 C 1.46843 * 111.00381 * 298.75149 * 15 14 13 30 30 H 1.07998 * 119.99930 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00178 * 0.02562 * 1 2 3 32 32 H 1.08001 * 120.00178 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.47297 * 4.99317 * 3 2 1 34 34 H 1.09003 * 109.46886 * 244.99620 * 3 2 1 35 35 H 1.09006 * 109.46999 * 209.99684 * 6 5 4 36 36 H 1.08997 * 109.47379 * 329.99288 * 6 5 4 37 37 H 1.08997 * 112.85243 * 43.79540 * 7 6 5 38 38 H 1.08994 * 113.61581 * 334.56417 * 8 7 6 39 39 H 1.09001 * 113.61453 * 105.46908 * 8 7 6 40 40 H 1.08995 * 113.61773 * 270.88911 * 9 8 7 41 41 H 0.96704 * 113.99790 * 82.46712 * 10 9 8 42 42 H 1.08991 * 113.61166 * 254.52028 * 11 7 6 43 43 H 1.08997 * 113.61792 * 25.43354 * 11 7 6 44 44 H 1.08999 * 109.46187 * 294.17597 * 16 15 14 45 45 H 1.09006 * 109.46490 * 54.14288 * 16 15 14 46 46 H 1.08996 * 109.50790 * 299.23663 * 17 16 15 47 47 H 1.09008 * 109.50000 * 179.11686 * 17 16 15 48 48 H 1.08996 * 109.52384 * 182.43964 * 18 17 16 49 49 H 1.09001 * 109.57742 * 62.27814 * 18 17 16 50 50 H 0.97002 * 119.99459 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.46574 * 305.86028 * 29 15 14 52 52 H 1.09008 * 109.45969 * 65.82630 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2921 0.9034 1.1431 6 6 5.0459 0.3063 -0.0172 7 6 5.7393 1.4211 -0.8029 8 6 4.8542 2.0490 -1.8926 9 6 6.1075 2.0778 -2.7834 10 8 5.8514 1.7319 -4.1460 11 6 6.6379 0.9064 -1.9398 12 7 4.7565 1.1063 2.3433 13 7 3.8471 1.6305 3.0850 14 6 2.7462 1.7964 2.3904 15 7 1.5559 2.3373 2.8498 16 6 1.7358 3.7373 3.2547 17 6 0.3781 4.3434 3.6171 18 6 -0.2461 3.5382 4.7602 19 6 -0.3779 2.0744 4.3303 20 1 -1.0466 2.0060 3.4722 21 6 -0.9374 1.2629 5.4702 22 1 -0.3663 0.4433 5.8808 23 6 -2.1782 1.5666 5.9889 24 7 -2.8738 2.5643 5.4884 25 14 -2.8719 0.5602 7.4013 26 1 -1.9007 -0.4978 7.7791 27 1 -3.1162 1.4466 8.5675 28 1 -4.1501 -0.0679 6.9807 29 6 1.0017 1.5342 3.9472 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3585 2.1317 0.0894 34 1 2.6213 1.4025 -0.9314 35 1 5.7932 -0.3937 0.3566 36 1 4.3499 -0.2199 -0.6705 37 1 6.2264 2.1531 -0.1587 38 1 4.0735 1.3823 -2.2588 39 1 4.4796 3.0393 -1.6339 40 1 6.6948 2.9903 -2.6814 41 1 5.5176 2.4646 -4.6817 42 1 7.7031 0.9744 -1.7192 43 1 6.3447 -0.0726 -2.3189 44 1 2.3966 3.7830 4.1204 45 1 2.1765 4.2998 2.4315 46 1 -0.2788 4.3107 2.7479 47 1 0.5139 5.3779 3.9326 48 1 -1.2324 3.9398 4.9925 49 1 0.3906 3.6027 5.6426 50 1 -3.7470 2.7777 5.8531 51 1 0.9093 0.4963 3.6270 52 1 1.6660 1.5902 4.8096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338625485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:44 Heat of formation + Delta-G solvation = 68.962151 kcal Electronic energy + Delta-G solvation = -31545.816416 eV Core-core repulsion = 27547.678721 eV Total energy + Delta-G solvation = -3998.137695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.78185 -39.76402 -38.26961 -36.17401 -35.65654 -33.91456 -32.72719 -32.16566 -30.89727 -29.98430 -27.52025 -26.82750 -26.10042 -25.02827 -23.75178 -23.34370 -21.62301 -20.99906 -20.78527 -19.95798 -19.83847 -18.58763 -17.91654 -17.27646 -16.40134 -16.18609 -15.76798 -15.62074 -15.26427 -14.88246 -14.54358 -14.28019 -14.15953 -13.87838 -13.65158 -13.49569 -12.91925 -12.82073 -12.68835 -12.59920 -12.52774 -12.32950 -12.08780 -11.85065 -11.65111 -11.56321 -11.24337 -11.16159 -10.99220 -10.81647 -10.73242 -10.69138 -10.34790 -10.20257 -10.16854 -9.94420 -9.91664 -9.63130 -9.56705 -9.25964 -8.85633 -8.61897 -8.39058 -8.16051 -6.02705 -4.08291 1.82749 2.01629 2.68228 3.05530 3.28222 3.36626 3.41409 3.78744 4.02239 4.16575 4.17824 4.30685 4.44572 4.48102 4.55683 4.65565 4.74104 4.91139 4.99895 5.02193 5.26380 5.27996 5.35079 5.36410 5.39792 5.44160 5.49799 5.57282 5.61229 5.72770 5.80040 5.83875 5.87581 5.95537 6.05405 6.09484 6.24539 6.38239 6.39354 6.46567 6.56241 6.57654 6.67417 6.78922 6.89870 7.06432 7.24438 7.31100 7.40444 7.71068 7.77598 7.98334 8.08952 8.40515 8.94922 8.99237 9.56388 11.03539 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.002562 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.718098 B =10925.160299 C =11112.471759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.194 4.194 3 C 0.142 3.858 4 N -0.460 5.460 5 C 0.169 3.831 6 C -0.015 4.015 7 C -0.103 4.103 8 C -0.170 4.170 9 C 0.077 3.923 10 O -0.561 6.561 11 C -0.121 4.121 12 N -0.290 5.290 13 N -0.317 5.317 14 C 0.367 3.633 15 N -0.468 5.468 16 C 0.075 3.925 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.059 3.941 20 H 0.035 0.965 21 C -0.513 4.513 22 H 0.055 0.945 23 C 0.064 3.936 24 N -0.888 5.888 25 Si 0.890 3.110 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 C 0.083 3.917 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.377 0.623 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.035 0.965 50 H 0.259 0.741 51 H 0.058 0.942 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.095 0.308 -19.120 23.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.213 4.213 3 C 0.019 3.981 4 N -0.152 5.152 5 C -0.099 4.099 6 C -0.055 4.055 7 C -0.123 4.123 8 C -0.208 4.208 9 C 0.018 3.982 10 O -0.366 6.366 11 C -0.159 4.159 12 N -0.130 5.130 13 N -0.160 5.160 14 C 0.011 3.989 15 N -0.194 5.194 16 C -0.052 4.052 17 C -0.153 4.153 18 C -0.152 4.152 19 C 0.040 3.960 20 H 0.053 0.947 21 C -0.552 4.552 22 H 0.073 0.927 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.719 3.281 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.043 4.043 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.225 0.775 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.112 0.888 49 H 0.054 0.946 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.744 -0.160 -18.093 22.722 hybrid contribution -1.132 0.021 0.229 1.155 sum 12.612 -0.139 -17.864 21.868 Atomic orbital electron populations 1.24013 0.95504 1.02891 0.95155 1.22915 0.96444 0.97376 1.04600 1.20949 0.91884 0.98170 0.87085 1.46370 1.11282 1.46512 1.11062 1.24563 0.83019 1.04328 0.97955 1.19923 0.97937 0.96786 0.90852 1.22339 0.97335 0.97988 0.94637 1.23867 0.98076 1.01824 0.97030 1.23313 0.96112 0.98155 0.80655 1.86526 1.87911 1.40744 1.21423 1.23113 0.99907 0.98874 0.93999 1.73968 1.23791 1.15596 0.99686 1.74678 0.98191 1.18183 1.24986 1.22710 0.93495 0.99615 0.83050 1.58949 1.17282 1.03738 1.39477 1.22082 0.98870 0.85504 0.98718 1.21704 0.94592 0.98196 1.00833 1.21700 1.01643 0.97445 0.94369 1.18685 0.88758 0.92092 0.96457 0.94717 1.21122 1.02071 1.15139 1.16831 0.92673 1.24904 0.96756 0.95171 0.96863 1.69894 1.12579 1.28447 1.41793 0.86557 0.78941 0.80294 0.82357 1.19793 1.21003 1.21048 1.22418 0.98394 0.95089 0.88406 0.87759 0.87593 0.87202 0.87763 0.88606 0.88074 0.89912 0.88213 0.89028 0.91268 0.90059 0.77536 0.90459 0.88857 0.93691 0.92543 0.92010 0.92709 0.88753 0.94601 0.93063 0.92377 0.94219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 14.32 29.01 0.42 -1.15 16 2 C -0.19 -2.20 9.85 -36.03 -0.35 -2.56 16 3 C 0.14 1.60 6.33 -5.20 -0.03 1.56 16 4 N -0.46 -6.70 2.79 -115.37 -0.32 -7.02 16 5 C 0.17 2.38 7.31 -154.03 -1.13 1.26 16 6 C -0.02 -0.14 5.26 -27.88 -0.15 -0.29 16 7 C -0.10 -0.82 3.64 -89.80 -0.33 -1.15 16 8 C -0.17 -1.21 6.42 -25.92 -0.17 -1.37 16 9 C 0.08 0.51 5.21 -25.91 -0.14 0.38 16 10 O -0.56 -4.08 13.67 -35.23 -0.48 -4.57 16 11 C -0.12 -0.84 7.47 -25.91 -0.19 -1.03 16 12 N -0.29 -5.21 12.18 32.99 0.40 -4.81 16 13 N -0.32 -6.37 12.19 30.31 0.37 -6.00 16 14 C 0.37 6.70 6.41 -318.87 -2.05 4.66 16 15 N -0.47 -8.84 4.67 -174.55 -0.82 -9.66 16 16 C 0.08 1.35 5.39 -3.84 -0.02 1.33 16 17 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 18 C -0.11 -2.59 5.03 -26.60 -0.13 -2.73 16 19 C 0.06 1.43 2.26 -91.69 -0.21 1.23 16 20 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 21 C -0.51 -13.84 8.56 -34.44 -0.29 -14.14 16 22 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 23 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 24 N -0.89 -24.60 11.37 55.43 0.63 -23.97 16 25 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.08 1.81 4.60 -3.84 -0.02 1.79 16 30 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.11 1.22 7.84 -52.49 -0.41 0.81 16 32 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.10 1.23 7.79 -51.93 -0.40 0.82 16 34 H 0.10 0.82 5.48 -51.93 -0.28 0.53 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.66 7.62 -51.93 -0.40 0.26 16 37 H 0.10 0.91 8.12 -51.93 -0.42 0.49 16 38 H 0.09 0.64 6.76 -51.93 -0.35 0.29 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.38 1.23 9.12 45.56 0.42 1.65 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 48 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 49 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 51 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 52 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 LS Contribution 413.98 15.07 6.24 6.24 Total: -1.00 -31.82 413.98 -12.09 -43.92 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.05 Total: 2.67 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -5.04 Total: -12.87 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.26 Total: -51.46 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.48 Total: -4.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.82 -12.09 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338625485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.879 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds