Wall clock time and date at job start Wed Apr 1 2020 04:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99844 * 2 1 4 4 N 1.46499 * 109.47318 * 124.99737 * 3 2 1 5 5 C 1.36732 * 127.14002 * 90.15371 * 4 3 2 6 6 C 1.50702 * 126.34277 * 359.94833 * 5 4 3 7 7 C 1.53001 * 109.47452 * 90.00173 * 6 5 4 8 8 C 1.53787 * 113.60846 * 272.49357 * 7 6 5 9 9 C 1.53782 * 87.07981 * 220.01722 * 8 7 6 10 10 O 1.42897 * 113.69157 * 139.98983 * 9 8 7 11 11 C 1.53782 * 113.61230 * 174.99811 * 7 6 5 12 12 N 1.30289 * 107.30952 * 179.97438 * 5 4 3 13 13 N 1.28529 * 110.05156 * 359.97438 * 12 5 4 14 14 C 1.31220 * 109.86044 * 359.74631 * 13 12 5 15 15 N 1.38578 * 126.47290 * 180.25290 * 14 13 12 16 16 C 1.46845 * 111.00035 * 62.96531 * 15 14 13 17 17 C 1.53035 * 109.52450 * 174.15603 * 16 15 14 18 18 C 1.53121 * 109.27755 * 59.18305 * 17 16 15 19 19 C 1.53125 * 109.15772 * 302.34438 * 18 17 16 20 20 H 1.09008 * 109.50025 * 297.71518 * 19 18 17 21 21 C 1.50700 * 109.53410 * 177.61833 * 19 18 17 22 22 H 1.07998 * 119.99395 * 240.17043 * 21 19 18 23 23 C 1.37878 * 120.00296 * 60.17363 * 21 19 18 24 24 N 1.31520 * 119.99800 * 0.02562 * 23 21 19 25 25 Si 1.86790 * 119.99971 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47328 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46921 * 120.00211 * 25 23 21 28 28 H 1.48496 * 109.47383 * 240.00195 * 25 23 21 29 29 C 1.46843 * 111.00381 * 298.75149 * 15 14 13 30 30 H 1.07998 * 119.99930 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00178 * 0.02562 * 1 2 3 32 32 H 1.08001 * 120.00178 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.47297 * 4.99317 * 3 2 1 34 34 H 1.09003 * 109.46886 * 244.99620 * 3 2 1 35 35 H 1.09006 * 109.46999 * 209.99684 * 6 5 4 36 36 H 1.08997 * 109.47379 * 329.99288 * 6 5 4 37 37 H 1.08997 * 112.85243 * 43.79540 * 7 6 5 38 38 H 1.08994 * 113.61581 * 334.56417 * 8 7 6 39 39 H 1.09001 * 113.61453 * 105.46908 * 8 7 6 40 40 H 1.08995 * 113.61773 * 270.88911 * 9 8 7 41 41 H 0.96704 * 113.99790 * 82.46712 * 10 9 8 42 42 H 1.08991 * 113.61166 * 254.52028 * 11 7 6 43 43 H 1.08997 * 113.61792 * 25.43354 * 11 7 6 44 44 H 1.08999 * 109.46187 * 294.17597 * 16 15 14 45 45 H 1.09006 * 109.46490 * 54.14288 * 16 15 14 46 46 H 1.08996 * 109.50790 * 299.23663 * 17 16 15 47 47 H 1.09008 * 109.50000 * 179.11686 * 17 16 15 48 48 H 1.08996 * 109.52384 * 182.43964 * 18 17 16 49 49 H 1.09001 * 109.57742 * 62.27814 * 18 17 16 50 50 H 0.97002 * 119.99459 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.46574 * 305.86028 * 29 15 14 52 52 H 1.09008 * 109.45969 * 65.82630 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2921 0.9034 1.1431 6 6 5.0459 0.3063 -0.0172 7 6 5.7393 1.4211 -0.8029 8 6 4.8542 2.0490 -1.8926 9 6 6.1075 2.0778 -2.7834 10 8 5.8514 1.7319 -4.1460 11 6 6.6379 0.9064 -1.9398 12 7 4.7565 1.1063 2.3433 13 7 3.8471 1.6305 3.0850 14 6 2.7462 1.7964 2.3904 15 7 1.5559 2.3373 2.8498 16 6 1.7358 3.7373 3.2547 17 6 0.3781 4.3434 3.6171 18 6 -0.2461 3.5382 4.7602 19 6 -0.3779 2.0744 4.3303 20 1 -1.0466 2.0060 3.4722 21 6 -0.9374 1.2629 5.4702 22 1 -0.3663 0.4433 5.8808 23 6 -2.1782 1.5666 5.9889 24 7 -2.8738 2.5643 5.4884 25 14 -2.8719 0.5602 7.4013 26 1 -1.9007 -0.4978 7.7791 27 1 -3.1162 1.4466 8.5675 28 1 -4.1501 -0.0679 6.9807 29 6 1.0017 1.5342 3.9472 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3585 2.1317 0.0894 34 1 2.6213 1.4025 -0.9314 35 1 5.7932 -0.3937 0.3566 36 1 4.3499 -0.2199 -0.6705 37 1 6.2264 2.1531 -0.1587 38 1 4.0735 1.3823 -2.2588 39 1 4.4796 3.0393 -1.6339 40 1 6.6948 2.9903 -2.6814 41 1 5.5176 2.4646 -4.6817 42 1 7.7031 0.9744 -1.7192 43 1 6.3447 -0.0726 -2.3189 44 1 2.3966 3.7830 4.1204 45 1 2.1765 4.2998 2.4315 46 1 -0.2788 4.3107 2.7479 47 1 0.5139 5.3779 3.9326 48 1 -1.2324 3.9398 4.9925 49 1 0.3906 3.6027 5.6426 50 1 -3.7470 2.7777 5.8531 51 1 0.9093 0.4963 3.6270 52 1 1.6660 1.5902 4.8096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338625485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:43 Heat of formation + Delta-G solvation = 51.216193 kcal Electronic energy + Delta-G solvation = -31546.585938 eV Core-core repulsion = 27547.678721 eV Total energy + Delta-G solvation = -3998.907217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.05559 -40.36480 -39.86885 -37.18780 -36.29755 -35.68566 -33.80070 -33.75956 -32.05834 -31.81053 -28.69706 -27.81208 -27.01388 -26.65256 -25.36240 -24.09828 -23.33749 -22.21442 -22.00682 -20.88094 -20.50925 -20.27037 -18.86916 -18.42956 -17.92690 -17.29423 -17.19554 -16.51299 -16.47504 -16.13692 -15.62940 -15.61252 -15.34989 -14.91497 -14.84371 -14.63086 -14.48915 -14.40399 -14.14776 -13.57918 -13.47213 -13.33260 -13.19691 -12.89211 -12.83329 -12.72157 -12.61273 -12.58500 -12.52595 -12.14837 -11.94590 -11.84298 -11.75184 -11.67995 -11.42263 -11.21619 -11.10192 -11.08168 -10.78210 -10.68244 -10.51725 -10.41910 -9.97421 -9.77025 -8.10983 -6.23650 0.64307 0.95098 1.38837 1.41699 1.52002 1.58333 1.74611 2.41605 2.79212 3.16852 3.18794 3.40273 3.57349 3.61243 3.69997 3.83048 3.89405 3.95886 3.99918 4.07623 4.11235 4.17128 4.27290 4.36011 4.39805 4.49424 4.52772 4.54418 4.63686 4.77912 4.80293 4.81309 4.85165 4.88229 4.90206 4.92213 4.97095 5.03053 5.08159 5.09362 5.23480 5.28271 5.44065 5.47638 5.56753 5.60754 5.63237 5.68520 5.77083 5.98689 6.10951 6.32807 6.37257 6.84927 6.94113 7.43730 7.68569 8.93988 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.002562 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.718098 B =10925.160299 C =11112.471759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.197 4.197 3 C 0.138 3.862 4 N -0.453 5.453 5 C 0.195 3.805 6 C -0.015 4.015 7 C -0.101 4.101 8 C -0.167 4.167 9 C 0.079 3.921 10 O -0.577 6.577 11 C -0.118 4.118 12 N -0.329 5.329 13 N -0.353 5.353 14 C 0.348 3.652 15 N -0.459 5.459 16 C 0.079 3.921 17 C -0.103 4.103 18 C -0.107 4.107 19 C 0.063 3.937 20 H 0.012 0.988 21 C -0.537 4.537 22 H 0.043 0.957 23 C 0.023 3.977 24 N -0.908 5.908 25 Si 0.949 3.051 26 H -0.274 1.274 27 H -0.279 1.279 28 H -0.277 1.277 29 C 0.104 3.896 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.394 0.606 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.031 0.969 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.021 0.979 50 H 0.262 0.738 51 H 0.045 0.955 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.795 0.220 -21.252 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.216 4.216 3 C 0.017 3.983 4 N -0.145 5.145 5 C -0.073 4.073 6 C -0.054 4.054 7 C -0.121 4.121 8 C -0.205 4.205 9 C 0.020 3.980 10 O -0.385 6.385 11 C -0.155 4.155 12 N -0.169 5.169 13 N -0.196 5.196 14 C -0.010 4.010 15 N -0.185 5.185 16 C -0.047 4.047 17 C -0.141 4.141 18 C -0.145 4.145 19 C 0.045 3.955 20 H 0.030 0.970 21 C -0.575 4.575 22 H 0.062 0.938 23 C -0.177 4.177 24 N -0.547 5.547 25 Si 0.775 3.225 26 H -0.199 1.199 27 H -0.205 1.205 28 H -0.202 1.202 29 C -0.023 4.023 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.244 0.756 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.049 0.951 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.040 0.960 50 H 0.072 0.928 51 H 0.064 0.936 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 14.444 -0.235 -20.257 24.880 hybrid contribution -1.309 0.018 0.809 1.539 sum 13.135 -0.217 -19.448 23.469 Atomic orbital electron populations 1.24128 0.95789 1.03180 0.95161 1.22993 0.96444 0.97648 1.04514 1.21232 0.91836 0.98116 0.87082 1.46523 1.11837 1.45508 1.10594 1.25424 0.82629 1.01391 0.97897 1.20224 0.98237 0.97381 0.89591 1.22234 0.97905 0.97341 0.94631 1.23866 0.98324 1.01714 0.96575 1.23303 0.95836 0.98351 0.80504 1.86482 1.88090 1.42175 1.21743 1.23097 1.00069 0.99129 0.93252 1.73900 1.24116 1.17526 1.01313 1.74566 0.99192 1.19204 1.26639 1.22573 0.92880 1.01058 0.84450 1.58864 1.18011 1.03766 1.37841 1.22080 0.98191 0.85251 0.99221 1.21585 0.94571 0.98851 0.99095 1.21516 1.00310 0.97092 0.95613 1.18543 0.89321 0.92942 0.94743 0.97004 1.21404 1.02671 1.15476 1.17995 0.93848 1.25573 0.96983 0.96128 0.98985 1.69995 1.12806 1.29245 1.42694 0.85642 0.78272 0.78918 0.79642 1.19881 1.20458 1.20246 1.21964 0.96844 0.94810 0.88676 0.86973 0.88003 0.86441 0.88083 0.85319 0.87248 0.87648 0.89503 0.88478 0.91442 0.89088 0.75643 0.89847 0.88638 0.95084 0.89825 0.91581 0.90084 0.91293 0.95984 0.92832 0.93606 0.96397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 14.32 67.78 0.97 -2.17 16 2 C -0.20 -4.12 9.85 25.64 0.25 -3.87 16 3 C 0.14 2.82 6.33 85.63 0.54 3.36 16 4 N -0.45 -12.59 2.79 -518.91 -1.45 -14.04 16 5 C 0.19 5.22 7.31 137.64 1.01 6.23 16 6 C -0.01 -0.24 5.26 29.85 0.16 -0.08 16 7 C -0.10 -1.37 3.64 -10.26 -0.04 -1.40 16 8 C -0.17 -1.87 6.42 31.12 0.20 -1.67 16 9 C 0.08 0.83 5.21 31.12 0.16 1.00 16 10 O -0.58 -6.77 13.67 -148.98 -2.04 -8.81 16 11 C -0.12 -1.30 7.47 31.12 0.23 -1.07 16 12 N -0.33 -11.75 12.18 -49.54 -0.60 -12.35 16 13 N -0.35 -14.32 12.19 -58.00 -0.71 -15.02 16 14 C 0.35 12.63 6.41 260.11 1.67 14.29 16 15 N -0.46 -17.40 4.67 -706.16 -3.30 -20.70 16 16 C 0.08 2.81 5.39 86.33 0.46 3.27 16 17 C -0.10 -3.75 6.09 30.65 0.19 -3.57 16 18 C -0.11 -5.01 5.03 30.68 0.15 -4.85 16 19 C 0.06 3.18 2.26 -11.49 -0.03 3.16 16 20 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 21 C -0.54 -29.89 8.56 25.60 0.22 -29.67 16 22 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 23 C 0.02 1.26 5.30 84.65 0.45 1.71 16 24 N -0.91 -51.05 11.37 21.45 0.24 -50.81 16 25 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 29 C 0.10 4.71 4.60 86.32 0.40 5.10 16 30 H 0.11 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 32 H 0.12 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.10 2.19 7.79 -2.38 -0.02 2.17 16 34 H 0.13 1.76 5.48 -2.39 -0.01 1.75 16 35 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.11 1.28 7.62 -2.39 -0.02 1.27 16 37 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 38 H 0.10 1.00 6.76 -2.39 -0.02 0.98 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.39 1.51 9.12 -74.05 -0.68 0.84 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 1.04 8.10 -2.39 -0.02 1.03 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 2.54 8.10 -2.38 -0.02 2.52 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 48 H 0.07 3.58 6.17 -2.39 -0.01 3.57 16 49 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 51 H 0.05 2.14 8.10 -2.39 -0.02 2.12 16 52 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -70.44 413.98 1.41 -69.04 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.23 Total: 17.20 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 7.00 Total: -10.24 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -5.81 Total: -112.92 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -2.04 Total: -8.81 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.44 1.41 -69.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338625485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.252 kcal (2) G-P(sol) polarization free energy of solvation -70.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds