Wall clock time and date at job start Wed Apr 1 2020 04:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99835 * 2 1 4 4 N 1.46503 * 109.47011 * 124.99922 * 3 2 1 5 5 C 1.36735 * 127.13793 * 270.15239 * 4 3 2 6 6 C 1.50693 * 126.35068 * 0.04085 * 5 4 3 7 7 C 1.53002 * 109.46961 * 270.25086 * 6 5 4 8 8 H 1.08998 * 109.47423 * 54.99407 * 7 6 5 9 9 O 1.42906 * 109.46948 * 294.99935 * 7 6 5 10 10 C 1.50700 * 109.47318 * 175.00182 * 7 6 5 11 11 H 1.08001 * 119.99834 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00059 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00170 * 359.97438 * 12 10 7 14 14 Si 1.86806 * 119.99837 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.46921 * 89.99748 * 14 12 10 16 16 H 1.48498 * 109.46870 * 209.99783 * 14 12 10 17 17 H 1.48490 * 109.47017 * 329.99965 * 14 12 10 18 18 N 1.30296 * 107.30075 * 180.22778 * 5 4 3 19 19 N 1.28522 * 110.05640 * 359.77355 * 18 5 4 20 20 C 1.31224 * 109.86094 * 0.02562 * 19 18 5 21 21 N 1.38583 * 126.47225 * 179.97438 * 20 19 18 22 22 C 1.47841 * 110.99747 * 239.18055 * 21 20 19 23 23 C 1.54908 * 104.79482 * 146.36806 * 22 21 20 24 24 C 1.55140 * 101.65061 * 322.92838 * 23 22 21 25 25 H 1.09003 * 110.85826 * 277.20180 * 24 23 22 26 26 C 1.53006 * 110.70522 * 154.03875 * 24 23 22 27 27 C 1.53780 * 113.61448 * 165.54064 * 26 24 23 28 28 C 1.53948 * 87.01697 * 220.04552 * 27 26 24 29 29 C 1.53780 * 87.11633 * 25.36271 * 28 27 26 30 30 C 1.47438 * 110.99968 * 0.02677 * 21 20 19 31 31 H 1.08000 * 120.00425 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99782 * 179.97438 * 1 2 3 33 33 H 1.07991 * 120.00227 * 180.02562 * 2 1 3 34 34 H 1.09006 * 109.47037 * 5.00169 * 3 2 1 35 35 H 1.08996 * 109.47401 * 245.00654 * 3 2 1 36 36 H 1.09000 * 109.47104 * 30.24831 * 6 5 4 37 37 H 1.08999 * 109.47629 * 150.24874 * 6 5 4 38 38 H 0.96704 * 113.99504 * 299.99890 * 9 7 6 39 39 H 0.96994 * 119.99812 * 180.02562 * 13 12 10 40 40 H 1.09004 * 110.37692 * 265.19541 * 22 21 20 41 41 H 1.08997 * 110.37466 * 27.42913 * 22 21 20 42 42 H 1.09002 * 110.98998 * 204.84157 * 23 22 21 43 43 H 1.08996 * 110.99180 * 81.02183 * 23 22 21 44 44 H 1.09002 * 112.84791 * 296.73381 * 26 24 23 45 45 H 1.09000 * 113.61461 * 334.56153 * 27 26 24 46 46 H 1.08995 * 113.61894 * 105.46890 * 27 26 24 47 47 H 1.09005 * 113.54029 * 270.80899 * 28 27 26 48 48 H 1.09010 * 113.74678 * 139.94278 * 28 27 26 49 49 H 1.08994 * 113.61871 * 220.09800 * 29 28 27 50 50 H 1.08997 * 113.61428 * 89.18288 * 29 28 27 51 51 H 1.09002 * 109.89065 * 117.34126 * 30 21 20 52 52 H 1.08996 * 110.02855 * 356.22024 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.7437 1.7908 2.3950 6 6 1.4454 2.3704 2.8942 7 6 1.4409 3.8833 2.6655 8 1 1.6342 4.0923 1.6134 9 8 2.4579 4.4890 3.4661 10 6 0.0969 4.4456 3.0508 11 1 -0.6769 3.7895 3.4213 12 6 -0.1453 5.7975 2.9293 13 7 0.7967 6.5963 2.4776 14 14 -1.8116 6.4944 3.4063 15 1 -1.7952 6.8786 4.8407 16 1 -2.1035 7.6909 2.5766 17 1 -2.8604 5.4677 3.1808 18 7 3.8375 1.6378 3.0863 19 7 4.7529 1.1131 2.3525 20 6 4.2886 0.9020 1.1434 21 7 4.9837 0.3510 0.0787 22 6 5.0339 1.2886 -1.0633 23 6 6.4069 1.0258 -1.7308 24 6 7.3088 0.7578 -0.4972 25 1 7.6501 1.6939 -0.0553 26 6 8.4997 -0.1237 -0.8791 27 6 9.6142 -0.1462 0.1802 28 6 10.6153 -0.1035 -0.9885 29 6 9.5055 0.5702 -1.8127 30 6 6.3645 0.0111 0.4682 31 1 -0.5401 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9352 -0.0004 34 1 1.3585 2.1317 0.0896 35 1 2.6212 1.4028 -0.9314 36 1 0.6140 1.9187 2.3531 37 1 1.3408 2.1637 3.9593 38 1 2.3494 4.3437 4.4159 39 1 0.6264 7.5474 2.3925 40 1 4.2253 1.0780 -1.7632 41 1 4.9719 2.3184 -0.7117 42 1 6.7480 1.9030 -2.2806 43 1 6.3643 0.1518 -2.3806 44 1 8.2005 -1.1152 -1.2192 45 1 9.6378 0.7445 0.8081 46 1 9.6518 -1.0715 0.7550 47 1 10.8957 -1.0900 -1.3578 48 1 11.4758 0.5404 -0.8061 49 1 9.4554 0.2222 -2.8443 50 1 9.4994 1.6570 -1.7306 51 1 6.5203 -1.0643 0.3814 52 1 6.5528 0.3314 1.4929 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338943651.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:17 Heat of formation + Delta-G solvation = 75.445295 kcal Electronic energy + Delta-G solvation = -31300.714077 eV Core-core repulsion = 27302.857513 eV Total energy + Delta-G solvation = -3997.856564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.56991 -39.96075 -37.96578 -36.21562 -35.78477 -32.76517 -32.48529 -32.14566 -30.56715 -29.59111 -27.72946 -26.70452 -25.81904 -25.22211 -25.07910 -22.37720 -21.74051 -21.02914 -20.59905 -19.86880 -19.83629 -19.69381 -17.42251 -16.96216 -16.25469 -15.95664 -15.80690 -15.70573 -14.85879 -14.65634 -14.45675 -14.26716 -13.92397 -13.71401 -13.61578 -13.34989 -13.04660 -12.99988 -12.88669 -12.67877 -12.62546 -12.32184 -12.22579 -11.74937 -11.52823 -11.30345 -11.26196 -11.09608 -11.03429 -10.92368 -10.89658 -10.77105 -10.69788 -10.31454 -10.26564 -10.16830 -10.09138 -9.74359 -9.64942 -9.45620 -9.08213 -8.65239 -8.29804 -7.73590 -6.06950 -4.26854 1.93704 2.20355 2.79023 3.24051 3.31353 3.32235 3.37983 3.86880 4.11355 4.28337 4.33177 4.37930 4.54676 4.58451 4.66549 4.78508 4.88010 4.90594 5.05670 5.08651 5.15452 5.19837 5.20879 5.31039 5.35733 5.45593 5.48853 5.53265 5.53986 5.59373 5.64080 5.65591 5.71333 5.75471 5.76577 5.81827 5.91591 5.98533 6.13073 6.15853 6.29322 6.32473 6.34948 6.43969 6.47303 6.56935 6.65785 6.71440 6.97546 7.50148 7.59004 7.76219 8.07131 8.76079 9.31223 9.38063 9.53653 10.96962 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.002578 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.718124 B =10859.701338 C =11567.027296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.176 4.176 3 C 0.134 3.866 4 N -0.475 5.475 5 C 0.219 3.781 6 C -0.064 4.064 7 C 0.242 3.758 8 H 0.049 0.951 9 O -0.558 6.558 10 C -0.574 4.574 11 H 0.059 0.941 12 C 0.080 3.920 13 N -0.857 5.857 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.273 1.273 18 N -0.286 5.286 19 N -0.326 5.326 20 C 0.333 3.667 21 N -0.442 5.442 22 C 0.037 3.963 23 C -0.118 4.118 24 C -0.098 4.098 25 H 0.081 0.919 26 C -0.096 4.096 27 C -0.138 4.138 28 C -0.144 4.144 29 C -0.136 4.136 30 C 0.054 3.946 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.349 0.651 39 H 0.261 0.739 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.898 -14.860 -11.936 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.195 4.195 3 C 0.012 3.988 4 N -0.170 5.170 5 C -0.049 4.049 6 C -0.105 4.105 7 C 0.182 3.818 8 H 0.067 0.933 9 O -0.360 6.360 10 C -0.612 4.612 11 H 0.077 0.923 12 C -0.126 4.126 13 N -0.493 5.493 14 Si 0.718 3.282 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.124 5.124 19 N -0.170 5.170 20 C -0.024 4.024 21 N -0.166 5.166 22 C -0.090 4.090 23 C -0.156 4.156 24 C -0.117 4.117 25 H 0.099 0.901 26 C -0.115 4.115 27 C -0.175 4.175 28 C -0.182 4.182 29 C -0.173 4.173 30 C -0.073 4.073 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.193 0.807 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.099 0.901 51 H 0.102 0.898 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.890 -14.895 -11.568 22.295 hybrid contribution -1.813 0.787 -0.243 1.991 sum 10.077 -14.108 -11.811 20.978 Atomic orbital electron populations 1.24021 0.95575 1.02733 0.97627 1.23048 0.96202 0.97932 1.02344 1.21025 0.92194 0.97713 0.87885 1.46124 1.10227 1.48851 1.11826 1.25195 0.99828 0.99348 0.80489 1.21209 0.86956 1.00722 1.01592 1.19262 0.87598 0.82472 0.92426 0.93325 1.86574 1.51653 1.78476 1.19306 1.21600 0.98700 0.93406 1.47525 0.92283 1.25039 0.96487 0.97157 0.93949 1.70083 1.32176 1.04157 1.42841 0.86649 0.84205 0.78675 0.78715 1.20403 1.21163 1.19778 1.73962 0.97147 1.16029 1.25226 1.74366 1.23440 1.19120 1.00116 1.22589 0.84258 1.00944 0.94590 1.60335 1.15886 1.37371 1.02962 1.23247 0.99134 0.94779 0.91810 1.22703 0.93108 1.02446 0.97305 1.22418 0.94870 0.99010 0.95412 0.90086 1.22493 0.92832 0.98957 0.97188 1.22992 0.95680 1.02515 0.96354 1.22847 0.97036 1.00869 0.97423 1.22911 0.95965 1.00201 0.98222 1.22915 0.82870 1.00728 1.00825 0.87545 0.87871 0.86805 0.87669 0.88432 0.90517 0.89272 0.80652 0.92899 0.89491 0.92410 0.90271 0.90175 0.89021 0.89913 0.91428 0.90405 0.91612 0.91645 0.90128 0.89786 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 14.32 29.01 0.42 -1.33 16 2 C -0.18 -2.13 9.85 -36.02 -0.35 -2.48 16 3 C 0.13 1.85 6.22 -5.19 -0.03 1.82 16 4 N -0.48 -8.29 2.79 -115.36 -0.32 -8.61 16 5 C 0.22 4.46 7.09 -154.02 -1.09 3.36 16 6 C -0.06 -1.31 5.05 -27.89 -0.14 -1.45 16 7 C 0.24 5.94 2.81 -27.88 -0.08 5.86 16 8 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 9 O -0.56 -14.72 12.49 -35.23 -0.44 -15.16 16 10 C -0.57 -15.00 8.76 -34.44 -0.30 -15.30 16 11 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 13 N -0.86 -24.85 12.84 55.43 0.71 -24.13 16 14 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 N -0.29 -6.36 12.18 32.99 0.40 -5.96 16 19 N -0.33 -6.70 10.47 30.32 0.32 -6.38 16 20 C 0.33 5.83 6.98 -318.87 -2.23 3.61 16 21 N -0.44 -6.04 5.22 -171.31 -0.89 -6.93 16 22 C 0.04 0.43 5.50 -2.30 -0.01 0.41 16 23 C -0.12 -1.03 6.29 -24.59 -0.15 -1.19 16 24 C -0.10 -0.94 2.62 -88.79 -0.23 -1.17 16 25 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 26 C -0.10 -0.75 2.95 -89.80 -0.27 -1.01 16 27 C -0.14 -1.09 7.65 -25.83 -0.20 -1.29 16 28 C -0.14 -1.00 8.09 -25.83 -0.21 -1.20 16 29 C -0.14 -0.96 7.41 -25.92 -0.19 -1.15 16 30 C 0.05 0.65 6.41 -2.84 -0.02 0.63 16 31 H 0.11 1.16 7.84 -52.49 -0.41 0.75 16 32 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.11 1.52 7.56 -51.93 -0.39 1.13 16 35 H 0.10 1.15 5.42 -51.93 -0.28 0.87 16 36 H 0.08 1.41 7.95 -51.93 -0.41 1.00 16 37 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.35 8.35 9.04 45.56 0.41 8.77 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.09 0.86 6.67 -51.93 -0.35 0.51 16 41 H 0.06 0.79 7.79 -51.93 -0.40 0.38 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 44 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 51 H 0.08 0.92 7.78 -51.93 -0.40 0.52 16 52 H 0.09 1.38 6.33 -51.93 -0.33 1.05 16 LS Contribution 416.19 15.07 6.27 6.27 Total: -1.00 -32.55 416.19 -12.18 -44.73 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.01 Total: 10.50 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -5.19 Total: -9.81 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.21 Total: -52.02 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.44 Total: -15.16 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.55 -12.18 -44.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338943651.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.171 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds