Wall clock time and date at job start Wed Apr 1 2020 04:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00529 * 2 1 4 4 O 1.42905 * 109.46949 * 135.00328 * 3 2 1 5 5 C 1.42899 * 113.99748 * 180.02562 * 4 3 2 6 6 H 1.09004 * 110.62836 * 26.89918 * 5 4 3 7 7 C 1.55140 * 110.85740 * 263.68750 * 5 4 3 8 8 C 1.54911 * 101.65323 * 205.89848 * 7 5 4 9 9 N 1.47846 * 104.79854 * 37.06420 * 8 7 5 10 10 C 1.38573 * 111.00148 * 213.63621 * 9 8 7 11 11 N 1.31222 * 126.47117 * 121.01336 * 10 9 8 12 12 N 1.28530 * 109.86179 * 180.25646 * 11 10 9 13 13 C 1.30296 * 110.05131 * 359.75068 * 12 11 10 14 14 C 1.50695 * 126.34865 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47358 * 269.95715 * 14 13 12 16 16 C 1.52997 * 109.47525 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47219 * 180.02562 * 16 15 14 18 18 H 1.08008 * 120.00380 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00215 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99974 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99777 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47386 * 89.99996 * 21 19 17 23 23 H 1.48497 * 109.47291 * 210.00367 * 21 19 17 24 24 H 1.48508 * 109.47223 * 330.00101 * 21 19 17 25 25 N 1.36446 * 126.47709 * 300.84342 * 10 9 8 26 26 C 1.46500 * 127.13657 * 0.02562 * 25 10 9 27 27 C 1.50702 * 109.46883 * 269.70768 * 26 25 10 28 28 C 1.30994 * 120.00204 * 124.99760 * 27 26 25 29 29 C 1.47448 * 108.56907 * 335.91162 * 9 8 7 30 30 H 1.07994 * 120.00273 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99631 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99631 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46911 * 15.00887 * 3 2 1 34 34 H 1.08994 * 109.47753 * 255.00426 * 3 2 1 35 35 H 1.08999 * 110.98797 * 323.98173 * 7 5 4 36 36 H 1.08995 * 110.99093 * 87.76269 * 7 5 4 37 37 H 1.09001 * 110.36891 * 278.23581 * 8 7 5 38 38 H 1.08996 * 110.37359 * 155.90375 * 8 7 5 39 39 H 1.08999 * 109.46916 * 29.95540 * 14 13 12 40 40 H 1.09003 * 109.47394 * 149.95459 * 14 13 12 41 41 H 1.09005 * 109.46805 * 300.00504 * 15 14 13 42 42 H 1.09003 * 109.47077 * 59.99549 * 15 14 13 43 43 H 1.08999 * 109.46958 * 299.99952 * 16 15 14 44 44 H 1.09002 * 109.46875 * 60.00214 * 16 15 14 45 45 H 0.97002 * 119.99792 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.47613 * 149.70028 * 26 25 10 47 47 H 1.09004 * 109.46865 * 29.70238 * 26 25 10 48 48 H 1.08002 * 119.99446 * 304.99290 * 27 26 25 49 49 H 1.08002 * 120.00352 * 0.02562 * 28 27 26 50 50 H 1.08005 * 119.99880 * 179.72197 * 28 27 26 51 51 H 1.08995 * 109.89199 * 120.38963 * 29 9 8 52 52 H 1.08997 * 109.88416 * 241.42385 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1269 1.2410 0.9527 5 6 3.9080 2.4350 1.0328 6 1 3.3156 3.3018 0.7397 7 6 5.1834 2.3205 0.1571 8 6 6.1430 3.3045 0.8716 9 7 5.8507 3.1385 2.3114 10 6 6.0020 4.3371 2.9902 11 7 5.0800 4.9627 3.6834 12 7 5.5636 6.0478 4.1740 13 6 6.8140 6.1751 3.8302 14 6 7.7323 7.3096 4.2051 15 6 7.6446 8.4086 3.1443 16 6 8.5764 9.5608 3.5251 17 6 8.4895 10.6434 2.4806 18 1 7.8354 10.5218 1.6298 19 6 9.2459 11.7889 2.6103 20 7 9.1696 12.7340 1.6989 21 14 10.3778 11.9991 4.0814 22 1 11.7183 11.4486 3.7572 23 1 10.5012 13.4422 4.4089 24 1 9.8135 11.2734 5.2478 25 7 7.1386 5.0881 3.0668 26 6 8.4359 4.7941 2.4530 27 6 9.2744 3.9888 3.4119 28 6 9.7754 2.8380 3.0368 29 6 4.4781 2.6194 2.4550 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3857 2.1160 0.2661 34 1 2.4756 1.4868 -0.9926 35 1 5.5801 1.3054 0.1759 36 1 4.9849 2.6410 -0.8656 37 1 5.9387 4.3283 0.5585 38 1 7.1801 3.0426 0.6622 39 1 7.4341 7.7138 5.1725 40 1 8.7571 6.9431 4.2647 41 1 7.9426 8.0043 2.1768 42 1 6.6198 8.7752 3.0846 43 1 8.2779 9.9649 4.4924 44 1 9.6013 9.1945 3.5849 45 1 9.7015 13.5400 1.7905 46 1 8.9472 5.7279 2.2191 47 1 8.2834 4.2240 1.5366 48 1 9.4622 4.3605 4.4084 49 1 9.5880 2.4665 2.0402 50 1 10.3800 2.2630 3.7226 51 1 4.4964 1.6613 2.9743 52 1 3.8689 3.3313 3.0118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339020795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:45 Heat of formation + Delta-G solvation = 84.155234 kcal Electronic energy + Delta-G solvation = -30192.961785 eV Core-core repulsion = 26195.482912 eV Total energy + Delta-G solvation = -3997.478873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.98241 -39.84703 -37.71031 -36.39248 -35.01804 -34.26362 -32.90948 -32.56185 -31.62029 -29.53892 -29.14870 -27.16845 -26.93271 -26.23574 -23.70990 -22.98749 -21.90231 -21.00437 -20.71762 -20.31082 -20.19988 -19.98496 -17.84756 -17.51810 -16.74658 -16.49333 -16.18997 -16.12446 -15.47434 -15.29704 -15.00956 -14.43582 -14.33523 -14.18475 -13.84181 -13.69782 -13.54389 -13.34846 -13.25971 -12.80988 -12.77368 -12.69397 -12.22923 -12.09883 -12.02178 -11.84932 -11.73881 -11.40436 -11.32854 -11.20301 -11.12204 -10.87162 -10.49806 -10.26098 -10.15866 -10.07747 -9.93543 -9.83750 -9.80267 -9.70414 -9.53788 -9.23283 -8.56687 -8.21577 -6.06830 -4.05387 1.65463 1.69447 1.81408 2.41795 2.93023 3.23459 3.28138 3.36697 3.39793 3.52378 4.08012 4.11404 4.34650 4.42607 4.43948 4.49330 4.56051 4.61641 4.69294 4.74438 4.86273 4.89328 4.99575 5.02097 5.05572 5.08381 5.19098 5.27052 5.30957 5.35623 5.38745 5.47180 5.53783 5.56046 5.62127 5.68941 5.88968 5.91692 5.97918 6.10699 6.19173 6.20859 6.27712 6.34308 6.45988 6.49934 6.56874 6.77700 6.79877 7.12148 7.23439 7.36069 7.75466 8.50600 8.88730 8.97774 9.55152 11.06602 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.002089 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.525076 B =13401.772311 C =14240.567289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.152 4.152 3 C 0.087 3.913 4 O -0.367 6.367 5 C 0.072 3.928 6 H 0.076 0.924 7 C -0.147 4.147 8 C 0.040 3.960 9 N -0.435 5.435 10 C 0.343 3.657 11 N -0.324 5.324 12 N -0.286 5.286 13 C 0.202 3.798 14 C -0.038 4.038 15 C -0.095 4.095 16 C -0.013 4.013 17 C -0.521 4.521 18 H 0.071 0.929 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.264 1.264 25 N -0.473 5.473 26 C 0.133 3.867 27 C -0.176 4.176 28 C -0.157 4.157 29 C 0.051 3.949 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.020 0.980 44 H 0.012 0.988 45 H 0.263 0.737 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.116 0.884 49 H 0.100 0.900 50 H 0.104 0.896 51 H 0.100 0.900 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 -28.042 -3.749 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.170 4.170 3 C 0.011 3.989 4 O -0.285 6.285 5 C 0.012 3.988 6 H 0.094 0.906 7 C -0.185 4.185 8 C -0.087 4.087 9 N -0.160 5.160 10 C -0.014 4.014 11 N -0.168 5.168 12 N -0.124 5.124 13 C -0.065 4.065 14 C -0.078 4.078 15 C -0.133 4.133 16 C -0.050 4.050 17 C -0.559 4.559 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.188 1.188 25 N -0.168 5.168 26 C 0.010 3.990 27 C -0.195 4.195 28 C -0.195 4.195 29 C -0.076 4.076 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.129 0.871 47 H 0.115 0.885 48 H 0.134 0.866 49 H 0.118 0.882 50 H 0.123 0.877 51 H 0.118 0.882 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.120 -28.081 -2.838 29.369 hybrid contribution 1.490 0.575 -0.433 1.655 sum -6.630 -27.506 -3.270 28.482 Atomic orbital electron populations 1.23873 0.95594 1.02409 0.99691 1.22718 0.95633 0.98088 1.00595 1.21628 0.88732 0.96091 0.92495 1.87938 1.44352 1.35934 1.60316 1.23295 0.91861 0.87994 0.95612 0.90603 1.23203 0.95212 1.00969 0.99159 1.23186 1.01169 0.99602 0.84744 1.60293 1.27095 1.18393 1.10183 1.22582 0.84631 0.91711 1.02497 1.74423 1.23520 1.03390 1.15514 1.74008 1.06159 1.11191 1.21009 1.25159 0.95063 0.90696 0.95630 1.20369 0.95248 0.90124 1.02083 1.21473 1.01801 0.94314 0.95758 1.19576 0.94129 0.93647 0.97642 1.21109 1.25779 1.00861 1.08193 0.91119 1.25037 0.96694 0.95703 0.96075 1.69916 1.41404 1.08131 1.34752 0.86775 0.81284 0.77319 0.83900 1.20360 1.21367 1.18849 1.46167 1.10435 1.18859 1.41323 1.21094 0.80450 1.02128 0.95295 1.23032 0.99075 0.97113 1.00237 1.23878 0.98896 0.95353 1.01338 1.22883 0.85637 1.02840 0.96286 0.87720 0.88331 0.86539 0.92481 0.92236 0.88937 0.89857 0.92092 0.88921 0.88423 0.90393 0.93097 0.91810 0.96159 0.96976 0.92723 0.87142 0.88461 0.86564 0.88217 0.87733 0.88192 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 14.31 29.02 0.42 -0.60 16 2 C -0.15 -1.01 9.89 -36.03 -0.36 -1.37 16 3 C 0.09 0.62 6.19 36.00 0.22 0.85 16 4 O -0.37 -3.37 10.06 -35.23 -0.35 -3.72 16 5 C 0.07 0.63 3.43 -24.90 -0.09 0.54 16 6 H 0.08 0.66 7.82 -51.93 -0.41 0.25 16 7 C -0.15 -1.07 6.81 -24.59 -0.17 -1.24 16 8 C 0.04 0.35 5.51 -2.30 -0.01 0.33 16 9 N -0.44 -4.93 5.22 -171.30 -0.89 -5.83 16 10 C 0.34 4.94 6.98 -318.89 -2.23 2.71 16 11 N -0.32 -5.62 10.47 30.31 0.32 -5.30 16 12 N -0.29 -5.31 12.18 32.99 0.40 -4.91 16 13 C 0.20 3.28 7.32 -154.01 -1.13 2.15 16 14 C -0.04 -0.60 5.42 -27.88 -0.15 -0.75 16 15 C -0.09 -1.81 5.13 -26.73 -0.14 -1.94 16 16 C -0.01 -0.29 4.04 -27.89 -0.11 -0.40 16 17 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 21 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 25 N -0.47 -6.51 2.79 -115.37 -0.32 -6.84 16 26 C 0.13 1.38 6.22 -5.19 -0.03 1.34 16 27 C -0.18 -1.67 9.85 -36.02 -0.35 -2.03 16 28 C -0.16 -1.22 14.32 29.02 0.42 -0.80 16 29 C 0.05 0.55 6.60 -2.83 -0.02 0.53 16 30 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 31 H 0.10 0.50 7.90 -52.49 -0.41 0.09 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.06 0.39 7.83 -51.93 -0.41 -0.02 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.60 7.79 -51.93 -0.40 0.20 16 38 H 0.09 0.66 6.67 -51.93 -0.35 0.31 16 39 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 44 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.11 1.14 7.88 -51.93 -0.41 0.73 16 47 H 0.10 0.82 5.08 -51.93 -0.26 0.56 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 49 H 0.10 0.65 7.84 -52.49 -0.41 0.24 16 50 H 0.10 0.71 8.06 -52.48 -0.42 0.28 16 51 H 0.10 1.06 8.06 -51.93 -0.42 0.64 16 52 H 0.10 1.29 6.32 -51.93 -0.33 0.96 16 LS Contribution 423.33 15.07 6.38 6.38 Total: -1.00 -33.80 423.33 -11.33 -45.12 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.80 Total: -0.85 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -4.16 Total: -13.82 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.28 Total: -49.75 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -0.35 Total: -3.72 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.80 -11.33 -45.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339020795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.280 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds