Wall clock time and date at job start Wed Apr 1 2020 04:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00529 * 2 1 4 4 O 1.42905 * 109.46949 * 135.00328 * 3 2 1 5 5 C 1.42899 * 113.99748 * 180.02562 * 4 3 2 6 6 H 1.09004 * 110.62836 * 26.89918 * 5 4 3 7 7 C 1.55140 * 110.85740 * 263.68750 * 5 4 3 8 8 C 1.54911 * 101.65323 * 205.89848 * 7 5 4 9 9 N 1.47846 * 104.79854 * 37.06420 * 8 7 5 10 10 C 1.38573 * 111.00148 * 213.63621 * 9 8 7 11 11 N 1.31222 * 126.47117 * 121.01336 * 10 9 8 12 12 N 1.28530 * 109.86179 * 180.25646 * 11 10 9 13 13 C 1.30296 * 110.05131 * 359.75068 * 12 11 10 14 14 C 1.50695 * 126.34865 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47358 * 269.95715 * 14 13 12 16 16 C 1.52997 * 109.47525 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47219 * 180.02562 * 16 15 14 18 18 H 1.08008 * 120.00380 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00215 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99974 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99777 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47386 * 89.99996 * 21 19 17 23 23 H 1.48497 * 109.47291 * 210.00367 * 21 19 17 24 24 H 1.48508 * 109.47223 * 330.00101 * 21 19 17 25 25 N 1.36446 * 126.47709 * 300.84342 * 10 9 8 26 26 C 1.46500 * 127.13657 * 0.02562 * 25 10 9 27 27 C 1.50702 * 109.46883 * 269.70768 * 26 25 10 28 28 C 1.30994 * 120.00204 * 124.99760 * 27 26 25 29 29 C 1.47448 * 108.56907 * 335.91162 * 9 8 7 30 30 H 1.07994 * 120.00273 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99631 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99631 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.46911 * 15.00887 * 3 2 1 34 34 H 1.08994 * 109.47753 * 255.00426 * 3 2 1 35 35 H 1.08999 * 110.98797 * 323.98173 * 7 5 4 36 36 H 1.08995 * 110.99093 * 87.76269 * 7 5 4 37 37 H 1.09001 * 110.36891 * 278.23581 * 8 7 5 38 38 H 1.08996 * 110.37359 * 155.90375 * 8 7 5 39 39 H 1.08999 * 109.46916 * 29.95540 * 14 13 12 40 40 H 1.09003 * 109.47394 * 149.95459 * 14 13 12 41 41 H 1.09005 * 109.46805 * 300.00504 * 15 14 13 42 42 H 1.09003 * 109.47077 * 59.99549 * 15 14 13 43 43 H 1.08999 * 109.46958 * 299.99952 * 16 15 14 44 44 H 1.09002 * 109.46875 * 60.00214 * 16 15 14 45 45 H 0.97002 * 119.99792 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.47613 * 149.70028 * 26 25 10 47 47 H 1.09004 * 109.46865 * 29.70238 * 26 25 10 48 48 H 1.08002 * 119.99446 * 304.99290 * 27 26 25 49 49 H 1.08002 * 120.00352 * 0.02562 * 28 27 26 50 50 H 1.08005 * 119.99880 * 179.72197 * 28 27 26 51 51 H 1.08995 * 109.89199 * 120.38963 * 29 9 8 52 52 H 1.08997 * 109.88416 * 241.42385 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1269 1.2410 0.9527 5 6 3.9080 2.4350 1.0328 6 1 3.3156 3.3018 0.7397 7 6 5.1834 2.3205 0.1571 8 6 6.1430 3.3045 0.8716 9 7 5.8507 3.1385 2.3114 10 6 6.0020 4.3371 2.9902 11 7 5.0800 4.9627 3.6834 12 7 5.5636 6.0478 4.1740 13 6 6.8140 6.1751 3.8302 14 6 7.7323 7.3096 4.2051 15 6 7.6446 8.4086 3.1443 16 6 8.5764 9.5608 3.5251 17 6 8.4895 10.6434 2.4806 18 1 7.8354 10.5218 1.6298 19 6 9.2459 11.7889 2.6103 20 7 9.1696 12.7340 1.6989 21 14 10.3778 11.9991 4.0814 22 1 11.7183 11.4486 3.7572 23 1 10.5012 13.4422 4.4089 24 1 9.8135 11.2734 5.2478 25 7 7.1386 5.0881 3.0668 26 6 8.4359 4.7941 2.4530 27 6 9.2744 3.9888 3.4119 28 6 9.7754 2.8380 3.0368 29 6 4.4781 2.6194 2.4550 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5399 0.9353 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3857 2.1160 0.2661 34 1 2.4756 1.4868 -0.9926 35 1 5.5801 1.3054 0.1759 36 1 4.9849 2.6410 -0.8656 37 1 5.9387 4.3283 0.5585 38 1 7.1801 3.0426 0.6622 39 1 7.4341 7.7138 5.1725 40 1 8.7571 6.9431 4.2647 41 1 7.9426 8.0043 2.1768 42 1 6.6198 8.7752 3.0846 43 1 8.2779 9.9649 4.4924 44 1 9.6013 9.1945 3.5849 45 1 9.7015 13.5400 1.7905 46 1 8.9472 5.7279 2.2191 47 1 8.2834 4.2240 1.5366 48 1 9.4622 4.3605 4.4084 49 1 9.5880 2.4665 2.0402 50 1 10.3800 2.2630 3.7226 51 1 4.4964 1.6613 2.9743 52 1 3.8689 3.3313 3.0118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339020795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:44 Heat of formation + Delta-G solvation = 66.072669 kcal Electronic energy + Delta-G solvation = -30193.745904 eV Core-core repulsion = 26195.482912 eV Total energy + Delta-G solvation = -3998.262992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.12869 -40.62401 -38.43386 -37.35616 -36.53142 -34.86840 -34.46916 -33.70954 -32.75081 -30.91325 -29.93808 -28.61021 -27.81633 -26.79988 -25.39583 -23.87432 -22.78019 -22.15800 -21.82731 -21.49761 -20.95570 -20.75539 -18.93803 -18.65506 -18.21950 -17.42318 -17.28032 -16.71407 -16.47300 -16.17025 -16.08495 -15.82563 -15.57479 -15.12559 -14.89078 -14.72905 -14.47629 -14.33435 -14.06939 -13.99545 -13.89195 -13.55009 -13.44016 -13.39908 -12.92489 -12.86442 -12.70078 -12.57252 -12.44627 -12.37132 -11.94116 -11.82438 -11.80565 -11.75951 -11.63865 -11.46089 -11.35177 -11.15456 -10.84626 -10.75893 -10.73885 -10.51095 -10.23457 -9.34054 -8.27185 -6.31938 0.67318 0.88138 1.22289 1.39026 1.42598 1.54185 1.54884 1.71835 2.39189 2.50904 2.68497 3.08707 3.29896 3.38345 3.43944 3.55132 3.79459 3.83746 3.88239 4.00596 4.04690 4.07691 4.18011 4.22287 4.26470 4.30457 4.34616 4.42270 4.47051 4.55322 4.57583 4.65208 4.70991 4.72875 4.76981 4.91749 4.93603 4.95868 5.02307 5.03096 5.03625 5.04941 5.36452 5.44729 5.49976 5.58330 5.58691 5.65316 5.66888 5.68384 5.72009 6.08108 6.16489 6.29745 6.76180 7.32651 7.68586 8.89787 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.002089 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.525076 B =13401.772311 C =14240.567289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.169 4.169 3 C 0.083 3.917 4 O -0.380 6.380 5 C 0.075 3.925 6 H 0.073 0.927 7 C -0.134 4.134 8 C 0.037 3.963 9 N -0.431 5.431 10 C 0.354 3.646 11 N -0.361 5.361 12 N -0.325 5.325 13 C 0.195 3.805 14 C -0.025 4.025 15 C -0.082 4.082 16 C -0.009 4.009 17 C -0.534 4.534 18 H 0.026 0.974 19 C 0.001 3.999 20 N -0.954 5.954 21 Si 0.953 3.047 22 H -0.262 1.262 23 H -0.289 1.289 24 H -0.241 1.241 25 N -0.468 5.468 26 C 0.127 3.873 27 C -0.199 4.199 28 C -0.137 4.137 29 C 0.050 3.950 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.051 0.949 42 H 0.038 0.962 43 H 0.024 0.976 44 H 0.033 0.967 45 H 0.265 0.735 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.108 0.892 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.100 0.900 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 -30.563 -3.527 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C 0.007 3.993 4 O -0.299 6.299 5 C 0.016 3.984 6 H 0.091 0.909 7 C -0.172 4.172 8 C -0.089 4.089 9 N -0.156 5.156 10 C -0.004 4.004 11 N -0.205 5.205 12 N -0.163 5.163 13 C -0.074 4.074 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.046 4.046 17 C -0.572 4.572 18 H 0.044 0.956 19 C -0.195 4.195 20 N -0.595 5.595 21 Si 0.776 3.224 22 H -0.186 1.186 23 H -0.215 1.215 24 H -0.164 1.164 25 N -0.162 5.162 26 C 0.007 3.993 27 C -0.218 4.218 28 C -0.175 4.175 29 C -0.078 4.078 30 H 0.136 0.864 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.135 0.865 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.129 0.871 47 H 0.136 0.864 48 H 0.126 0.874 49 H 0.135 0.865 50 H 0.134 0.866 51 H 0.118 0.882 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.342 -30.638 -2.629 31.398 hybrid contribution 0.846 1.256 -0.629 1.640 sum -5.496 -29.382 -3.258 30.069 Atomic orbital electron populations 1.24065 0.95412 1.03267 0.98278 1.22776 0.96039 0.97945 1.01916 1.21762 0.88390 0.96491 0.92665 1.87912 1.44930 1.35868 1.61174 1.23201 0.92614 0.88012 0.94566 0.90852 1.23173 0.93543 1.01004 0.99527 1.23347 1.03003 0.99523 0.82997 1.60438 1.27177 1.16421 1.11526 1.22878 0.84319 0.91850 1.01358 1.74348 1.24924 1.03886 1.17336 1.73906 1.07562 1.12311 1.22515 1.25109 0.94596 0.91538 0.96191 1.20202 0.96821 0.88864 1.00614 1.21228 0.99376 0.94379 0.97115 1.19519 0.96077 0.93182 0.95870 1.21490 1.24684 1.02798 1.08245 0.95600 1.26078 0.98703 0.95177 0.99558 1.70086 1.43018 1.09021 1.37371 0.85613 0.79267 0.77425 0.80093 1.18647 1.21500 1.16448 1.46325 1.11356 1.17900 1.40641 1.21390 0.78972 1.02806 0.96178 1.22938 1.00698 0.98178 1.00027 1.24138 0.97046 0.94136 1.02160 1.22834 0.85325 1.01984 0.97608 0.86439 0.87952 0.86362 0.92521 0.90973 0.88071 0.87897 0.93279 0.86515 0.88152 0.87532 0.93046 0.94340 0.95748 0.94859 0.92576 0.87121 0.86426 0.87372 0.86539 0.86571 0.88156 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 14.31 67.78 0.97 -0.78 16 2 C -0.17 -2.07 9.89 25.65 0.25 -1.82 16 3 C 0.08 1.10 6.19 71.24 0.44 1.54 16 4 O -0.38 -6.60 10.06 -148.98 -1.50 -8.10 16 5 C 0.08 1.25 3.43 31.78 0.11 1.36 16 6 H 0.07 1.25 7.82 -2.38 -0.02 1.23 16 7 C -0.13 -1.62 6.81 31.98 0.22 -1.40 16 8 C 0.04 0.57 5.51 86.77 0.48 1.05 16 9 N -0.43 -9.27 5.22 -695.88 -3.63 -12.91 16 10 C 0.35 10.09 6.98 260.12 1.82 11.90 16 11 N -0.36 -12.85 10.47 -58.01 -0.61 -13.46 16 12 N -0.32 -12.38 12.18 -49.54 -0.60 -12.98 16 13 C 0.19 6.29 7.32 137.64 1.01 7.29 16 14 C -0.03 -0.77 5.42 29.85 0.16 -0.60 16 15 C -0.08 -3.12 5.13 30.59 0.16 -2.97 16 16 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 17 C -0.53 -30.58 9.66 25.60 0.25 -30.33 16 18 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 19 C 0.00 0.07 5.47 84.65 0.46 0.53 16 20 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 21 Si 0.95 43.17 27.47 68.60 1.88 45.06 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 25 N -0.47 -12.47 2.79 -518.91 -1.45 -13.92 16 26 C 0.13 2.37 6.22 85.63 0.53 2.90 16 27 C -0.20 -3.31 9.85 25.65 0.25 -3.06 16 28 C -0.14 -1.67 14.32 67.79 0.97 -0.70 16 29 C 0.05 1.06 6.60 86.65 0.57 1.64 16 30 H 0.12 0.85 8.06 -2.91 -0.02 0.83 16 31 H 0.10 0.93 7.90 -2.91 -0.02 0.91 16 32 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.06 0.74 7.83 -2.39 -0.02 0.72 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 0.90 7.79 -2.39 -0.02 0.88 16 38 H 0.12 1.23 6.67 -2.39 -0.02 1.22 16 39 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.11 2.59 7.93 -2.39 -0.02 2.57 16 41 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 44 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.11 2.06 7.88 -2.39 -0.02 2.04 16 47 H 0.12 1.64 5.08 -2.38 -0.01 1.63 16 48 H 0.11 1.96 8.06 -2.91 -0.02 1.94 16 49 H 0.12 1.02 7.84 -2.91 -0.02 0.99 16 50 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 51 H 0.10 2.11 8.06 -2.39 -0.02 2.09 16 52 H 0.08 2.07 6.32 -2.39 -0.02 2.06 16 Total: -1.00 -76.23 423.33 3.99 -72.25 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.82 Total: 17.42 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 8.77 Total: -13.72 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -5.99 Total: -112.89 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -1.50 Total: -8.10 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.06 kcal Total: -76.23 3.99 -72.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339020795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.319 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds