Wall clock time and date at job start Wed Apr 1 2020 04:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99718 * 2 1 4 4 N 1.46499 * 109.47153 * 124.72369 * 3 2 1 5 5 C 1.36742 * 127.13842 * 275.26776 * 4 3 2 6 6 C 1.50701 * 126.34379 * 359.96037 * 5 4 3 7 7 C 1.53005 * 109.46932 * 90.00606 * 6 5 4 8 8 C 1.53000 * 109.47044 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47037 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99811 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00040 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00070 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99774 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47152 * 90.00098 * 13 11 9 15 15 H 1.48500 * 109.46834 * 210.00359 * 13 11 9 16 16 H 1.48498 * 109.47309 * 330.00124 * 13 11 9 17 17 N 1.30293 * 107.30559 * 179.83157 * 5 4 3 18 18 N 1.28534 * 110.05385 * 0.44317 * 17 5 4 19 19 C 1.31218 * 109.85996 * 359.71955 * 18 17 5 20 20 N 1.38573 * 126.47423 * 179.97438 * 19 18 17 21 21 C 1.47097 * 111.00164 * 103.99738 * 20 19 18 22 22 C 1.52925 * 108.49842 * 171.67212 * 21 20 19 23 23 C 1.51511 * 110.82808 * 58.65115 * 22 21 20 24 24 H 1.08992 * 108.14326 * 188.11921 * 23 22 21 25 25 O 1.42781 * 112.70820 * 67.68747 * 23 22 21 26 26 C 1.43573 * 109.33174 * 211.25669 * 25 23 22 27 27 C 1.54502 * 107.49408 * 1.99493 * 26 25 23 28 28 C 1.54173 * 112.17559 * 308.21533 * 23 22 21 29 29 H 1.09005 * 112.77079 * 282.27213 * 28 23 22 30 30 C 1.46546 * 110.99860 * 340.85720 * 20 19 18 31 31 H 1.07997 * 120.00366 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99919 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.00366 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.46979 * 4.72268 * 3 2 1 35 35 H 1.09004 * 109.46698 * 244.72251 * 3 2 1 36 36 H 1.08996 * 109.46790 * 209.99918 * 6 5 4 37 37 H 1.08990 * 109.47444 * 330.00356 * 6 5 4 38 38 H 1.09002 * 109.46573 * 299.99650 * 7 6 5 39 39 H 1.08998 * 109.47588 * 59.99576 * 7 6 5 40 40 H 1.08997 * 109.46883 * 299.99986 * 8 7 6 41 41 H 1.09004 * 109.47190 * 59.99901 * 8 7 6 42 42 H 0.96996 * 120.00044 * 179.97438 * 12 11 9 43 43 H 1.09001 * 109.63695 * 291.37901 * 21 20 19 44 44 H 1.09000 * 109.63538 * 51.96871 * 21 20 19 45 45 H 1.08997 * 109.20465 * 298.30197 * 22 21 20 46 46 H 1.08997 * 109.20650 * 178.99752 * 22 21 20 47 47 H 1.08997 * 109.84857 * 121.48245 * 26 25 23 48 48 H 1.08999 * 109.83982 * 242.40225 * 26 25 23 49 49 H 1.08994 * 110.91495 * 263.61631 * 27 26 25 50 50 H 1.08999 * 110.91124 * 139.99767 * 27 26 25 51 51 H 1.08994 * 109.23144 * 307.31604 * 30 20 19 52 52 H 1.09002 * 109.23029 * 66.73364 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9889 1.3348 1.1352 5 6 2.7071 1.7063 2.4207 6 6 1.3718 2.1687 2.9444 7 6 0.5725 0.9617 3.4395 8 6 -0.7829 1.4312 3.9718 9 6 -1.5705 0.2423 4.4590 10 1 -1.1468 -0.7490 4.3949 11 6 -2.8324 0.4201 4.9854 12 7 -3.5194 -0.6174 5.4110 13 14 -3.5654 2.1348 5.0955 14 1 -4.3140 2.4341 3.8484 15 1 -4.4890 2.2046 6.2562 16 1 -2.4759 3.1287 5.2694 17 7 3.8063 1.5837 3.1094 18 7 4.7584 1.1720 2.3503 19 6 4.3125 1.0029 1.1279 20 7 5.0471 0.5697 0.0356 21 6 4.7417 -0.8337 -0.2819 22 6 5.4161 -1.1891 -1.6076 23 6 6.9145 -0.9812 -1.5226 24 1 7.3316 -1.1050 -2.5219 25 8 7.5498 -1.9052 -0.6387 26 6 8.6948 -1.2794 -0.0398 27 6 8.7535 0.1749 -0.5581 28 6 7.2785 0.4229 -1.0002 29 1 7.1754 1.1961 -1.7616 30 6 6.4840 0.7389 0.2686 31 1 -0.5400 0.9352 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9352 0.0004 34 1 1.3581 2.1319 0.0846 35 1 2.6251 1.4004 -0.9293 36 1 1.5262 2.8651 3.7685 37 1 0.8212 2.6665 2.1463 38 1 0.4181 0.2653 2.6153 39 1 1.1231 0.4638 4.2376 40 1 -0.6282 2.1275 4.7960 41 1 -1.3338 1.9294 3.1739 42 1 -4.4070 -0.4923 5.7818 43 1 5.1243 -1.4797 0.5083 44 1 3.6632 -0.9622 -0.3737 45 1 5.0106 -0.5564 -2.3971 46 1 5.2119 -2.2330 -1.8454 47 1 8.5925 -1.2817 1.0454 48 1 9.6007 -1.8132 -0.3271 49 1 9.4332 0.2587 -1.4059 50 1 9.0413 0.8606 0.2389 51 1 6.6803 1.7684 0.5681 52 1 6.8000 0.0665 1.0662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342341525.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:11 Heat of formation + Delta-G solvation = 55.230264 kcal Electronic energy + Delta-G solvation = -31472.685094 eV Core-core repulsion = 27473.951940 eV Total energy + Delta-G solvation = -3998.733154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.92345 -40.88161 -37.52768 -36.34834 -34.84355 -33.21471 -32.93211 -32.73949 -32.08697 -29.77268 -28.96099 -27.37166 -26.76868 -24.97145 -24.01447 -23.48280 -21.90098 -21.41064 -20.90395 -20.29237 -19.81887 -19.67255 -17.59511 -16.91798 -16.70176 -16.40660 -16.33855 -16.07495 -15.50508 -15.35832 -14.66753 -14.48909 -14.29748 -14.24061 -13.89978 -13.66033 -13.56896 -13.16717 -12.87342 -12.70299 -12.52926 -12.38485 -12.25487 -12.13670 -11.98131 -11.79859 -11.63061 -11.44921 -11.34291 -11.10915 -10.98429 -10.86255 -10.78609 -10.46165 -10.10621 -10.02006 -9.90379 -9.83548 -9.78049 -9.53756 -9.40521 -9.19505 -8.55091 -8.31330 -6.05089 -4.03235 1.73020 1.94162 2.50060 2.97483 3.28313 3.37187 3.40337 3.40752 3.49645 4.03744 4.18094 4.41774 4.43710 4.44749 4.57967 4.60961 4.65005 4.70025 4.74330 4.83931 4.87947 4.96991 5.04425 5.10599 5.17049 5.28585 5.30049 5.34917 5.36029 5.43066 5.46436 5.50048 5.53434 5.61050 5.66797 5.71916 5.82106 5.84128 5.87512 5.95778 6.06283 6.39943 6.45239 6.49970 6.51189 6.55678 6.64779 6.67117 6.84147 7.19579 7.27105 7.39207 7.77469 8.53119 8.91182 9.00139 9.57041 11.08433 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002372 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.512839 B =11801.346391 C =12159.166707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.202 4.202 3 C 0.142 3.858 4 N -0.467 5.467 5 C 0.205 3.795 6 C -0.037 4.037 7 C -0.096 4.096 8 C -0.011 4.011 9 C -0.518 4.518 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.904 5.904 13 Si 0.879 3.121 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.264 1.264 17 N -0.290 5.290 18 N -0.319 5.319 19 C 0.338 3.662 20 N -0.451 5.451 21 C 0.054 3.946 22 C -0.110 4.110 23 C 0.085 3.915 24 H 0.064 0.936 25 O -0.374 6.374 26 C 0.049 3.951 27 C -0.152 4.152 28 C -0.113 4.113 29 H 0.107 0.893 30 C 0.078 3.922 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.018 0.982 41 H 0.011 0.989 42 H 0.263 0.737 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.084 0.916 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.211 3.104 -20.173 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.221 4.221 3 C 0.019 3.981 4 N -0.161 5.161 5 C -0.062 4.062 6 C -0.077 4.077 7 C -0.135 4.135 8 C -0.048 4.048 9 C -0.556 4.556 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.543 5.543 13 Si 0.706 3.294 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.189 1.189 17 N -0.129 5.129 18 N -0.164 5.164 19 C -0.018 4.018 20 N -0.175 5.175 21 C -0.073 4.073 22 C -0.148 4.148 23 C 0.027 3.973 24 H 0.082 0.918 25 O -0.294 6.294 26 C -0.028 4.028 27 C -0.190 4.190 28 C -0.132 4.132 29 H 0.125 0.875 30 C -0.049 4.049 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.106 0.894 51 H 0.103 0.897 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.818 3.161 -19.300 29.300 hybrid contribution -1.098 0.473 -0.431 1.271 sum 20.720 3.635 -19.731 28.842 Atomic orbital electron populations 1.24052 0.95334 1.03262 0.94263 1.22952 0.96382 0.97384 1.05365 1.20932 0.91807 0.97647 0.87669 1.46259 1.08793 1.50442 1.10604 1.25162 0.99135 1.01663 0.80257 1.20344 0.86093 1.00329 1.00890 1.21501 0.96739 0.94825 1.00452 1.19561 0.91998 0.97495 0.95783 1.21094 1.00093 0.94016 1.40385 0.91138 1.25032 0.96988 0.96630 0.94856 1.69914 1.12285 1.29815 1.42251 0.86793 0.79294 0.85571 0.77725 1.20386 1.21413 1.18880 1.74022 0.96163 1.17865 1.24829 1.74559 1.23925 1.20131 0.97749 1.22335 0.83349 1.04304 0.91839 1.58810 1.06995 1.20963 1.30749 1.22396 1.01294 0.85729 0.97916 1.21350 0.93087 1.02961 0.97431 1.22197 0.93712 0.87723 0.93677 0.91784 1.88380 1.42225 1.37567 1.61234 1.23208 0.89022 0.92311 0.98223 1.23323 0.96340 0.97114 1.02267 1.22935 0.94299 0.98061 0.97929 0.87515 1.21984 0.83428 1.03091 0.96406 0.87745 0.87233 0.87022 0.88373 0.87745 0.88595 0.90641 0.92472 0.92056 0.96338 0.97105 0.92756 0.92523 0.89823 0.89375 0.89890 0.91053 0.91193 0.90104 0.89450 0.89719 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 13.38 29.02 0.39 -1.07 16 2 C -0.20 -2.19 9.00 -36.02 -0.32 -2.52 16 3 C 0.14 1.48 6.15 -5.19 -0.03 1.45 16 4 N -0.47 -6.52 2.79 -115.36 -0.32 -6.84 16 5 C 0.21 3.39 7.32 -154.01 -1.13 2.27 16 6 C -0.04 -0.59 5.59 -27.88 -0.16 -0.74 16 7 C -0.10 -1.87 5.14 -26.73 -0.14 -2.01 16 8 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 9 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 10 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 11 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 12 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 13 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 17 N -0.29 -5.48 12.18 32.99 0.40 -5.08 16 18 N -0.32 -5.63 11.46 30.31 0.35 -5.28 16 19 C 0.34 4.91 6.86 -318.88 -2.19 2.72 16 20 N -0.45 -5.04 4.66 -174.68 -0.81 -5.86 16 21 C 0.05 0.55 5.40 -3.75 -0.02 0.53 16 22 C -0.11 -0.84 5.81 -27.52 -0.16 -1.00 16 23 C 0.08 0.66 3.19 -26.87 -0.09 0.57 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 O -0.37 -3.72 11.01 -35.23 -0.39 -4.11 16 26 C 0.05 0.37 7.05 37.95 0.27 0.64 16 27 C -0.15 -0.91 6.38 -24.36 -0.16 -1.07 16 28 C -0.11 -0.81 3.85 -88.42 -0.34 -1.15 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 30 C 0.08 0.79 3.90 -4.02 -0.02 0.78 16 31 H 0.10 1.09 7.84 -52.49 -0.41 0.68 16 32 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.11 1.23 6.31 -52.49 -0.33 0.89 16 34 H 0.10 0.92 7.07 -51.93 -0.37 0.55 16 35 H 0.10 0.91 8.10 -51.93 -0.42 0.48 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.08 1.03 7.39 -51.93 -0.38 0.64 16 38 H 0.06 1.09 6.77 -51.93 -0.35 0.74 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 44 H 0.08 0.84 5.42 -51.93 -0.28 0.56 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.49 7.97 -51.93 -0.41 0.07 16 51 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 52 H 0.06 0.71 6.91 -51.93 -0.36 0.36 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -33.93 404.52 -11.93 -45.86 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.72 Total: -0.49 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -4.63 Total: -14.01 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.39 Total: -49.97 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.39 Total: -4.11 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.93 -11.93 -45.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342341525.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.086 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds