Wall clock time and date at job start Wed Apr 1 2020 04:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99718 * 2 1 4 4 N 1.46499 * 109.47153 * 124.72369 * 3 2 1 5 5 C 1.36742 * 127.13842 * 275.26776 * 4 3 2 6 6 C 1.50701 * 126.34379 * 359.96037 * 5 4 3 7 7 C 1.53005 * 109.46932 * 90.00606 * 6 5 4 8 8 C 1.53000 * 109.47044 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47037 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99811 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00040 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00070 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99774 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47152 * 90.00098 * 13 11 9 15 15 H 1.48500 * 109.46834 * 210.00359 * 13 11 9 16 16 H 1.48498 * 109.47309 * 330.00124 * 13 11 9 17 17 N 1.30293 * 107.30559 * 179.83157 * 5 4 3 18 18 N 1.28534 * 110.05385 * 0.44317 * 17 5 4 19 19 C 1.31218 * 109.85996 * 359.71955 * 18 17 5 20 20 N 1.38573 * 126.47423 * 179.97438 * 19 18 17 21 21 C 1.47097 * 111.00164 * 103.99738 * 20 19 18 22 22 C 1.52925 * 108.49842 * 171.67212 * 21 20 19 23 23 C 1.51511 * 110.82808 * 58.65115 * 22 21 20 24 24 H 1.08992 * 108.14326 * 188.11921 * 23 22 21 25 25 O 1.42781 * 112.70820 * 67.68747 * 23 22 21 26 26 C 1.43573 * 109.33174 * 211.25669 * 25 23 22 27 27 C 1.54502 * 107.49408 * 1.99493 * 26 25 23 28 28 C 1.54173 * 112.17559 * 308.21533 * 23 22 21 29 29 H 1.09005 * 112.77079 * 282.27213 * 28 23 22 30 30 C 1.46546 * 110.99860 * 340.85720 * 20 19 18 31 31 H 1.07997 * 120.00366 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99919 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.00366 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.46979 * 4.72268 * 3 2 1 35 35 H 1.09004 * 109.46698 * 244.72251 * 3 2 1 36 36 H 1.08996 * 109.46790 * 209.99918 * 6 5 4 37 37 H 1.08990 * 109.47444 * 330.00356 * 6 5 4 38 38 H 1.09002 * 109.46573 * 299.99650 * 7 6 5 39 39 H 1.08998 * 109.47588 * 59.99576 * 7 6 5 40 40 H 1.08997 * 109.46883 * 299.99986 * 8 7 6 41 41 H 1.09004 * 109.47190 * 59.99901 * 8 7 6 42 42 H 0.96996 * 120.00044 * 179.97438 * 12 11 9 43 43 H 1.09001 * 109.63695 * 291.37901 * 21 20 19 44 44 H 1.09000 * 109.63538 * 51.96871 * 21 20 19 45 45 H 1.08997 * 109.20465 * 298.30197 * 22 21 20 46 46 H 1.08997 * 109.20650 * 178.99752 * 22 21 20 47 47 H 1.08997 * 109.84857 * 121.48245 * 26 25 23 48 48 H 1.08999 * 109.83982 * 242.40225 * 26 25 23 49 49 H 1.08994 * 110.91495 * 263.61631 * 27 26 25 50 50 H 1.08999 * 110.91124 * 139.99767 * 27 26 25 51 51 H 1.08994 * 109.23144 * 307.31604 * 30 20 19 52 52 H 1.09002 * 109.23029 * 66.73364 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9889 1.3348 1.1352 5 6 2.7071 1.7063 2.4207 6 6 1.3718 2.1687 2.9444 7 6 0.5725 0.9617 3.4395 8 6 -0.7829 1.4312 3.9718 9 6 -1.5705 0.2423 4.4590 10 1 -1.1468 -0.7490 4.3949 11 6 -2.8324 0.4201 4.9854 12 7 -3.5194 -0.6174 5.4110 13 14 -3.5654 2.1348 5.0955 14 1 -4.3140 2.4341 3.8484 15 1 -4.4890 2.2046 6.2562 16 1 -2.4759 3.1287 5.2694 17 7 3.8063 1.5837 3.1094 18 7 4.7584 1.1720 2.3503 19 6 4.3125 1.0029 1.1279 20 7 5.0471 0.5697 0.0356 21 6 4.7417 -0.8337 -0.2819 22 6 5.4161 -1.1891 -1.6076 23 6 6.9145 -0.9812 -1.5226 24 1 7.3316 -1.1050 -2.5219 25 8 7.5498 -1.9052 -0.6387 26 6 8.6948 -1.2794 -0.0398 27 6 8.7535 0.1749 -0.5581 28 6 7.2785 0.4229 -1.0002 29 1 7.1754 1.1961 -1.7616 30 6 6.4840 0.7389 0.2686 31 1 -0.5400 0.9352 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9352 0.0004 34 1 1.3581 2.1319 0.0846 35 1 2.6251 1.4004 -0.9293 36 1 1.5262 2.8651 3.7685 37 1 0.8212 2.6665 2.1463 38 1 0.4181 0.2653 2.6153 39 1 1.1231 0.4638 4.2376 40 1 -0.6282 2.1275 4.7960 41 1 -1.3338 1.9294 3.1739 42 1 -4.4070 -0.4923 5.7818 43 1 5.1243 -1.4797 0.5083 44 1 3.6632 -0.9622 -0.3737 45 1 5.0106 -0.5564 -2.3971 46 1 5.2119 -2.2330 -1.8454 47 1 8.5925 -1.2817 1.0454 48 1 9.6007 -1.8132 -0.3271 49 1 9.4332 0.2587 -1.4059 50 1 9.0413 0.8606 0.2389 51 1 6.6803 1.7684 0.5681 52 1 6.8000 0.0665 1.0662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342341525.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:10 Heat of formation + Delta-G solvation = 36.201488 kcal Electronic energy + Delta-G solvation = -31473.510243 eV Core-core repulsion = 27473.951940 eV Total energy + Delta-G solvation = -3999.558304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.10721 -41.56612 -38.38468 -37.42760 -36.39686 -34.48430 -33.89514 -33.78524 -33.31502 -31.26369 -29.63361 -28.83280 -27.77898 -25.82180 -25.44675 -24.50036 -22.62875 -22.40470 -22.18713 -21.73972 -20.78162 -20.48733 -18.91917 -18.49044 -17.65057 -17.39512 -17.30569 -16.75040 -16.47310 -16.26649 -16.10741 -15.82540 -15.57214 -15.23859 -15.00360 -14.75586 -14.50160 -14.34128 -13.92794 -13.86579 -13.64905 -13.45583 -13.25447 -13.14071 -12.90395 -12.76700 -12.70996 -12.55975 -12.53839 -12.46136 -11.98532 -11.82332 -11.76817 -11.64401 -11.61198 -11.47489 -11.40174 -11.33765 -11.15912 -10.72909 -10.65645 -10.45250 -10.38509 -9.49140 -8.25583 -6.30053 0.62379 0.92546 1.39327 1.43372 1.53272 1.54787 1.71375 2.40184 2.56810 2.83371 3.10357 3.33379 3.43252 3.53993 3.66643 3.77191 3.83726 3.84795 3.89086 3.93715 4.12077 4.15086 4.17688 4.25102 4.26650 4.33192 4.36883 4.42499 4.50689 4.60063 4.67045 4.72100 4.74087 4.79980 4.87744 4.91010 4.93326 4.96972 4.98346 5.02930 5.04371 5.07140 5.08885 5.21255 5.43088 5.51670 5.54787 5.57877 5.60845 5.66885 5.70024 6.08814 6.13225 6.31927 6.77974 7.34278 7.67282 8.91595 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002372 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.512839 B =11801.346391 C =12159.166707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.202 4.202 3 C 0.137 3.863 4 N -0.462 5.462 5 C 0.199 3.801 6 C -0.026 4.026 7 C -0.084 4.084 8 C -0.006 4.006 9 C -0.529 4.529 10 H 0.023 0.977 11 C 0.001 3.999 12 N -0.956 5.956 13 Si 0.953 3.047 14 H -0.260 1.260 15 H -0.291 1.291 16 H -0.241 1.241 17 N -0.330 5.330 18 N -0.357 5.357 19 C 0.348 3.652 20 N -0.437 5.437 21 C 0.056 3.944 22 C -0.105 4.105 23 C 0.078 3.922 24 H 0.087 0.913 25 O -0.402 6.402 26 C 0.042 3.958 27 C -0.144 4.144 28 C -0.104 4.104 29 H 0.130 0.870 30 C 0.079 3.921 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.056 0.944 39 H 0.030 0.970 40 H 0.022 0.978 41 H 0.035 0.965 42 H 0.265 0.735 43 H 0.026 0.974 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.088 0.912 47 H 0.054 0.946 48 H 0.084 0.916 49 H 0.105 0.895 50 H 0.089 0.911 51 H 0.077 0.923 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.611 5.842 -23.268 32.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.221 4.221 3 C 0.017 3.983 4 N -0.155 5.155 5 C -0.070 4.070 6 C -0.065 4.065 7 C -0.123 4.123 8 C -0.044 4.044 9 C -0.567 4.567 10 H 0.041 0.959 11 C -0.195 4.195 12 N -0.597 5.597 13 Si 0.775 3.225 14 H -0.184 1.184 15 H -0.217 1.217 16 H -0.164 1.164 17 N -0.169 5.169 18 N -0.201 5.201 19 C -0.009 4.009 20 N -0.161 5.161 21 C -0.071 4.071 22 C -0.143 4.143 23 C 0.021 3.979 24 H 0.104 0.896 25 O -0.322 6.322 26 C -0.034 4.034 27 C -0.182 4.182 28 C -0.123 4.123 29 H 0.148 0.852 30 C -0.048 4.048 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.104 0.896 45 H 0.130 0.870 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.123 0.877 50 H 0.107 0.893 51 H 0.095 0.905 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 22.242 5.898 -22.421 32.128 hybrid contribution -1.172 -0.557 0.528 1.401 sum 21.070 5.341 -21.893 30.851 Atomic orbital electron populations 1.24150 0.95510 1.03591 0.94351 1.22949 0.96338 0.97554 1.05209 1.21270 0.91890 0.97892 0.87286 1.46411 1.08925 1.49544 1.10655 1.25153 0.98776 1.01868 0.81202 1.20217 0.85585 0.98551 1.02171 1.21253 0.95365 0.96249 0.99393 1.19496 0.92997 0.95392 0.96486 1.21443 1.00778 0.94020 1.40443 0.95884 1.26075 0.97497 1.01624 0.94337 1.70090 1.12946 1.32829 1.43798 0.85623 0.78849 0.79751 0.78232 1.18440 1.21712 1.16424 1.73920 0.97339 1.19219 1.26374 1.74473 1.24547 1.21912 0.99173 1.22728 0.83805 1.02585 0.91819 1.59065 1.07263 1.21224 1.28581 1.22421 1.01654 0.84417 0.98622 1.21392 0.93020 1.03762 0.96087 1.22395 0.93676 0.87521 0.94336 0.89567 1.88354 1.43122 1.38888 1.61883 1.23312 0.88943 0.93738 0.97399 1.23319 0.96006 0.95733 1.03135 1.22959 0.94253 0.98404 0.96698 0.85244 1.22032 0.83068 1.02007 0.97693 0.86534 0.87949 0.87669 0.86387 0.85383 0.88196 0.87201 0.92572 0.95092 0.95979 0.94655 0.92632 0.95558 0.89627 0.87009 0.89399 0.92733 0.89814 0.87691 0.89279 0.90455 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 13.38 67.79 0.91 -1.95 16 2 C -0.20 -4.06 9.00 25.65 0.23 -3.83 16 3 C 0.14 2.49 6.15 85.64 0.53 3.02 16 4 N -0.46 -12.28 2.79 -518.90 -1.45 -13.73 16 5 C 0.20 6.43 7.32 137.64 1.01 7.44 16 6 C -0.03 -0.77 5.59 29.85 0.17 -0.60 16 7 C -0.08 -3.23 5.14 30.60 0.16 -3.07 16 8 C -0.01 -0.28 4.04 29.85 0.12 -0.16 16 9 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 10 H 0.02 1.48 7.99 -2.91 -0.02 1.45 16 11 C 0.00 0.05 5.47 84.65 0.46 0.51 16 12 N -0.96 -60.12 13.96 21.45 0.30 -59.82 16 13 Si 0.95 42.94 27.47 68.60 1.88 44.83 16 14 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 15 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.24 -9.91 6.54 99.48 0.65 -9.25 16 17 N -0.33 -12.70 12.18 -49.53 -0.60 -13.30 16 18 N -0.36 -12.91 11.46 -58.01 -0.67 -13.58 16 19 C 0.35 10.00 6.86 260.11 1.78 11.78 16 20 N -0.44 -9.35 4.66 -706.57 -3.29 -12.64 16 21 C 0.06 1.10 5.40 86.24 0.47 1.57 16 22 C -0.11 -1.38 5.81 30.08 0.17 -1.21 16 23 C 0.08 1.05 3.19 30.50 0.10 1.14 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 O -0.40 -7.74 11.01 -148.98 -1.64 -9.38 16 26 C 0.04 0.62 7.05 72.49 0.51 1.13 16 27 C -0.14 -1.44 6.38 32.13 0.21 -1.24 16 28 C -0.10 -1.26 3.85 -9.37 -0.04 -1.30 16 29 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 30 C 0.08 1.57 3.90 86.37 0.34 1.90 16 31 H 0.12 2.12 7.84 -2.91 -0.02 2.09 16 32 H 0.10 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.11 2.24 6.31 -2.91 -0.02 2.23 16 34 H 0.12 1.73 7.07 -2.39 -0.02 1.71 16 35 H 0.13 1.75 8.10 -2.38 -0.02 1.73 16 36 H 0.10 2.94 8.14 -2.39 -0.02 2.93 16 37 H 0.11 2.54 7.39 -2.39 -0.02 2.52 16 38 H 0.06 2.14 6.77 -2.39 -0.02 2.13 16 39 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 41 H 0.04 1.41 7.57 -2.38 -0.02 1.39 16 42 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.03 0.68 8.08 -2.39 -0.02 0.66 16 44 H 0.09 1.65 5.42 -2.39 -0.01 1.64 16 45 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 0.94 7.87 -2.39 -0.02 0.93 16 48 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.09 0.88 7.97 -2.39 -0.02 0.86 16 51 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 52 H 0.04 0.89 6.91 -2.39 -0.02 0.87 16 Total: -1.00 -77.69 404.52 2.74 -74.95 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.84 Total: 17.48 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 7.37 Total: -14.81 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -5.71 Total: -113.07 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -1.64 Total: -9.38 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.83 kcal Total: -77.69 2.74 -74.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342341525.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.152 kcal (2) G-P(sol) polarization free energy of solvation -77.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds