Wall clock time and date at job start Wed Apr 1 2020 04:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99626 * 2 1 4 4 N 1.46907 * 109.47172 * 125.00033 * 3 2 1 5 5 C 1.46900 * 110.99843 * 66.04115 * 4 3 2 6 6 C 1.50707 * 109.47079 * 200.06207 * 5 4 3 7 7 C 1.30997 * 119.99671 * 124.51377 * 6 5 4 8 8 C 1.38574 * 111.00071 * 189.99638 * 4 3 2 9 9 N 1.31217 * 126.47776 * 257.28479 * 8 4 3 10 10 N 1.28522 * 109.86766 * 180.02562 * 9 8 4 11 11 C 1.30294 * 110.04979 * 0.02562 * 10 9 8 12 12 C 1.50709 * 126.34806 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46721 * 269.99517 * 12 11 10 14 14 C 1.50706 * 109.47090 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99436 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00035 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00248 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99801 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47161 * 90.00121 * 18 16 14 20 20 H 1.48495 * 109.47056 * 210.00062 * 18 16 14 21 21 H 1.48505 * 109.47307 * 329.99991 * 18 16 14 22 22 N 1.36458 * 126.47554 * 77.32379 * 8 4 3 23 23 C 1.46506 * 127.13037 * 359.93370 * 22 8 4 24 24 C 1.52996 * 109.47204 * 86.41067 * 23 22 8 25 25 H 1.08996 * 110.27885 * 55.64050 * 24 23 22 26 26 C 1.54946 * 110.31208 * 177.73666 * 24 23 22 27 27 C 1.55413 * 100.89449 * 155.28500 * 26 24 23 28 28 C 1.54373 * 102.30848 * 325.98763 * 27 26 24 29 29 O 1.43240 * 107.59300 * 21.28748 * 28 27 26 30 30 H 1.08001 * 120.00190 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99945 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.00190 * 179.97438 * 2 1 3 33 33 H 1.08992 * 109.47642 * 4.99960 * 3 2 1 34 34 H 1.08996 * 109.46873 * 244.99309 * 3 2 1 35 35 H 1.08999 * 109.47460 * 320.06506 * 5 4 3 36 36 H 1.09005 * 109.47280 * 80.06669 * 5 4 3 37 37 H 1.07993 * 119.99944 * 304.52447 * 6 5 4 38 38 H 1.08000 * 119.99885 * 179.97438 * 7 6 5 39 39 H 1.07996 * 120.00426 * 0.02562 * 7 6 5 40 40 H 1.08995 * 109.47060 * 29.99156 * 12 11 10 41 41 H 1.09001 * 109.47101 * 149.99753 * 12 11 10 42 42 H 1.09000 * 109.47442 * 299.99877 * 13 12 11 43 43 H 1.09006 * 109.47529 * 60.00016 * 13 12 11 44 44 H 0.96997 * 120.00126 * 180.02562 * 17 16 14 45 45 H 1.09007 * 109.46783 * 206.40614 * 23 22 8 46 46 H 1.08994 * 109.47085 * 326.40323 * 23 22 8 47 47 H 1.09005 * 111.12114 * 273.27651 * 26 24 23 48 48 H 1.08998 * 111.12296 * 37.43556 * 26 24 23 49 49 H 1.08999 * 110.87627 * 207.74910 * 27 26 24 50 50 H 1.09003 * 110.93358 * 84.25176 * 27 26 24 51 51 H 1.08999 * 109.83286 * 261.77128 * 28 27 26 52 52 H 1.09004 * 109.90332 * 140.84432 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3321 1.1346 5 6 4.0494 0.3205 0.9743 6 6 4.6734 0.0283 2.3146 7 6 4.7111 -1.2010 2.7655 8 6 3.5419 2.5952 1.2990 9 7 4.7456 2.9775 0.9430 10 7 4.9185 4.2145 1.2458 11 6 3.8444 4.6908 1.8090 12 6 3.6469 6.0993 2.3076 13 6 4.0867 6.1888 3.7702 14 6 3.8898 7.5973 4.2687 15 1 3.4906 8.3528 3.6084 16 6 4.2195 7.9213 5.5677 17 7 4.7062 7.0013 6.3716 18 14 3.9748 9.6670 6.1857 19 1 2.6123 9.8022 6.7605 20 1 4.9852 9.9681 7.2314 21 1 4.1324 10.6186 5.0565 22 7 2.9291 3.6765 1.8625 23 6 1.5719 3.7377 2.4107 24 6 1.5911 3.2847 3.8720 25 1 2.3003 3.8832 4.4437 26 6 0.1738 3.3960 4.4883 27 6 0.2663 2.3448 5.6292 28 6 1.1883 1.2707 5.0132 29 8 1.9313 1.8917 3.9576 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4026 -0.9313 35 1 3.6164 -0.5936 0.5681 36 1 4.8125 0.6954 0.2922 37 1 5.0894 0.8325 2.9034 38 1 5.1587 -1.4105 3.7259 39 1 4.2953 -2.0052 2.1767 40 1 4.2439 6.7847 1.7061 41 1 2.5937 6.3686 2.2277 42 1 3.4897 5.5033 4.3718 43 1 5.1399 5.9193 3.8501 44 1 4.9378 7.2291 7.2856 45 1 1.2024 4.7616 2.3526 46 1 0.9179 3.0823 1.8357 47 1 -0.0042 4.3951 4.8861 48 1 -0.5924 3.1215 3.7633 49 1 -0.7158 1.9296 5.8554 50 1 0.7176 2.7777 6.5220 51 1 0.5882 0.4541 4.6120 52 1 1.8719 0.8891 5.7716 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343930108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:24 Heat of formation + Delta-G solvation = 82.116092 kcal Electronic energy + Delta-G solvation = -32397.920981 eV Core-core repulsion = 28400.353684 eV Total energy + Delta-G solvation = -3997.567297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.53975 -39.27686 -38.25468 -35.03202 -34.27493 -33.98721 -32.83188 -32.04487 -31.55523 -30.10779 -28.53355 -26.80776 -26.04083 -25.25558 -24.49631 -22.01146 -21.66822 -21.47277 -20.83571 -20.09562 -19.64731 -19.36938 -17.18739 -16.62465 -16.40843 -16.30225 -15.90574 -15.79496 -15.36225 -15.04159 -14.57547 -14.51505 -14.40290 -13.68968 -13.52470 -13.40273 -13.13634 -13.07365 -12.84038 -12.67061 -12.33718 -12.26138 -11.89382 -11.76584 -11.60463 -11.31962 -11.28445 -11.13300 -11.00318 -10.97762 -10.88288 -10.83834 -10.68732 -10.35621 -10.01805 -9.86603 -9.78349 -9.66463 -9.39706 -9.30235 -9.16212 -8.94058 -8.41283 -7.86804 -6.05846 -4.10057 1.88966 2.21995 2.37399 2.74981 3.27501 3.35043 3.36445 3.39491 3.82266 4.01343 4.40050 4.45880 4.51775 4.64641 4.76484 4.86885 4.89204 4.93617 5.04373 5.11442 5.14034 5.24320 5.25689 5.28949 5.32523 5.40286 5.49844 5.51074 5.52853 5.60017 5.68020 5.71986 5.77173 5.86656 5.93870 5.99084 6.00920 6.14642 6.31455 6.32979 6.38980 6.49060 6.49905 6.69861 6.72441 6.78207 6.94465 7.03257 7.17476 7.56178 7.57413 7.70475 7.91929 8.29179 8.96091 9.29283 9.54429 11.04920 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.003589 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.728166 B = 7800.757618 C = 8569.247185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.086 3.914 4 N -0.433 5.433 5 C 0.092 3.908 6 C -0.118 4.118 7 C -0.197 4.197 8 C 0.348 3.652 9 N -0.326 5.326 10 N -0.295 5.295 11 C 0.208 3.792 12 C -0.031 4.031 13 C 0.033 3.967 14 C -0.524 4.524 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.272 1.272 22 N -0.468 5.468 23 C 0.119 3.881 24 C 0.064 3.936 25 H 0.090 0.910 26 C -0.146 4.146 27 C -0.154 4.154 28 C 0.054 3.946 29 O -0.352 6.352 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.015 0.985 43 H 0.025 0.975 44 H 0.261 0.739 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.063 0.937 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.846 -15.639 -8.338 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.160 4.160 3 C -0.041 4.041 4 N -0.157 5.157 5 C -0.035 4.035 6 C -0.137 4.137 7 C -0.235 4.235 8 C -0.009 4.009 9 N -0.170 5.170 10 N -0.134 5.134 11 C -0.060 4.060 12 C -0.071 4.071 13 C -0.005 4.005 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 N -0.162 5.162 23 C -0.004 4.004 24 C 0.005 3.995 25 H 0.108 0.892 26 C -0.184 4.184 27 C -0.192 4.192 28 C -0.023 4.023 29 O -0.271 6.271 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.033 0.967 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.125 0.875 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.082 0.918 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.490 -15.952 -8.469 21.406 hybrid contribution -1.229 1.149 0.785 1.857 sum -12.719 -14.803 -7.685 20.975 Atomic orbital electron populations 1.23786 0.95650 1.01898 1.00391 1.22736 0.95869 0.97497 0.99912 1.21321 0.94621 0.96801 0.91354 1.58652 1.17557 0.98802 1.40671 1.21274 0.92113 0.93574 0.96496 1.22691 0.97235 0.97617 0.96128 1.23634 1.02808 0.96333 1.00700 1.22180 0.90947 0.87575 1.00161 1.74454 1.13745 1.06378 1.22417 1.73995 1.20651 1.02211 1.16507 1.25529 0.85666 0.94104 1.00660 1.20422 1.01619 0.84033 1.00980 1.19088 0.97491 0.97248 0.86703 1.21136 1.43280 0.95048 0.96745 0.92357 1.24993 0.95028 0.97167 0.96944 1.69973 1.43204 1.33150 1.06570 0.86593 0.77801 0.84907 0.78709 1.20721 1.21193 1.19729 1.46091 1.14250 1.09879 1.45992 1.21989 0.80640 1.03551 0.94263 1.23418 0.96495 0.84912 0.94642 0.89213 1.23227 0.96425 1.00892 0.97874 1.23107 1.00574 0.96426 0.99044 1.23029 0.93812 0.95440 0.90004 1.88622 1.64806 1.20363 1.53276 0.88668 0.88177 0.86964 0.90466 0.92763 0.89748 0.91084 0.87435 0.88632 0.89045 0.89377 0.91489 0.96687 0.95658 0.92902 0.87547 0.88921 0.89198 0.90487 0.90305 0.90277 0.91846 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 14.32 29.01 0.42 -0.98 16 2 C -0.14 -1.27 9.17 -36.03 -0.33 -1.60 16 3 C 0.09 0.96 5.27 -4.97 -0.03 0.93 16 4 N -0.43 -6.02 4.44 -177.25 -0.79 -6.80 16 5 C 0.09 1.19 5.10 -4.97 -0.03 1.17 16 6 C -0.12 -1.68 9.44 -36.02 -0.34 -2.02 16 7 C -0.20 -2.32 14.32 29.02 0.42 -1.90 16 8 C 0.35 6.02 6.29 -318.88 -2.01 4.01 16 9 N -0.33 -6.60 11.01 30.31 0.33 -6.27 16 10 N -0.30 -6.51 12.18 32.99 0.40 -6.11 16 11 C 0.21 4.17 7.32 -154.02 -1.13 3.05 16 12 C -0.03 -0.62 5.52 -27.88 -0.15 -0.78 16 13 C 0.03 0.82 4.96 -27.88 -0.14 0.69 16 14 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 18 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 N -0.47 -8.05 2.79 -114.08 -0.32 -8.37 16 23 C 0.12 1.63 5.76 -4.04 -0.02 1.60 16 24 C 0.06 0.93 3.68 -25.71 -0.09 0.83 16 25 H 0.09 1.67 6.68 -51.93 -0.35 1.32 16 26 C -0.15 -1.61 6.58 -24.42 -0.16 -1.77 16 27 C -0.15 -1.63 7.02 -24.73 -0.17 -1.80 16 28 C 0.05 0.65 7.80 37.88 0.30 0.95 16 29 O -0.35 -5.37 10.85 -35.23 -0.38 -5.75 16 30 H 0.09 0.70 7.84 -52.49 -0.41 0.29 16 31 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.11 0.91 6.74 -52.49 -0.35 0.56 16 33 H 0.08 0.85 6.36 -51.93 -0.33 0.52 16 34 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.08 0.86 5.78 -51.93 -0.30 0.56 16 36 H 0.07 1.02 7.27 -51.93 -0.38 0.64 16 37 H 0.11 1.89 8.03 -52.49 -0.42 1.47 16 38 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.09 0.89 7.84 -52.49 -0.41 0.48 16 40 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.07 1.19 7.20 -51.93 -0.37 0.81 16 42 H 0.01 0.39 6.68 -51.93 -0.35 0.04 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.11 1.30 7.15 -51.92 -0.37 0.93 16 46 H 0.09 1.08 6.73 -51.93 -0.35 0.73 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 52 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 422.16 15.07 6.36 6.36 Total: -1.00 -32.71 422.16 -11.14 -43.85 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.58 Total: 3.00 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -3.89 Total: -10.44 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.37 Total: -52.95 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.71 -11.14 -43.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343930108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.965 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds