Wall clock time and date at job start Wed Apr 1 2020 04:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99626 * 2 1 4 4 N 1.46907 * 109.47172 * 125.00033 * 3 2 1 5 5 C 1.46900 * 110.99843 * 66.04115 * 4 3 2 6 6 C 1.50707 * 109.47079 * 200.06207 * 5 4 3 7 7 C 1.30997 * 119.99671 * 124.51377 * 6 5 4 8 8 C 1.38574 * 111.00071 * 189.99638 * 4 3 2 9 9 N 1.31217 * 126.47776 * 257.28479 * 8 4 3 10 10 N 1.28522 * 109.86766 * 180.02562 * 9 8 4 11 11 C 1.30294 * 110.04979 * 0.02562 * 10 9 8 12 12 C 1.50709 * 126.34806 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46721 * 269.99517 * 12 11 10 14 14 C 1.50706 * 109.47090 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99436 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00035 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00248 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99801 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47161 * 90.00121 * 18 16 14 20 20 H 1.48495 * 109.47056 * 210.00062 * 18 16 14 21 21 H 1.48505 * 109.47307 * 329.99991 * 18 16 14 22 22 N 1.36458 * 126.47554 * 77.32379 * 8 4 3 23 23 C 1.46506 * 127.13037 * 359.93370 * 22 8 4 24 24 C 1.52996 * 109.47204 * 86.41067 * 23 22 8 25 25 H 1.08996 * 110.27885 * 55.64050 * 24 23 22 26 26 C 1.54946 * 110.31208 * 177.73666 * 24 23 22 27 27 C 1.55413 * 100.89449 * 155.28500 * 26 24 23 28 28 C 1.54373 * 102.30848 * 325.98763 * 27 26 24 29 29 O 1.43240 * 107.59300 * 21.28748 * 28 27 26 30 30 H 1.08001 * 120.00190 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99945 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.00190 * 179.97438 * 2 1 3 33 33 H 1.08992 * 109.47642 * 4.99960 * 3 2 1 34 34 H 1.08996 * 109.46873 * 244.99309 * 3 2 1 35 35 H 1.08999 * 109.47460 * 320.06506 * 5 4 3 36 36 H 1.09005 * 109.47280 * 80.06669 * 5 4 3 37 37 H 1.07993 * 119.99944 * 304.52447 * 6 5 4 38 38 H 1.08000 * 119.99885 * 179.97438 * 7 6 5 39 39 H 1.07996 * 120.00426 * 0.02562 * 7 6 5 40 40 H 1.08995 * 109.47060 * 29.99156 * 12 11 10 41 41 H 1.09001 * 109.47101 * 149.99753 * 12 11 10 42 42 H 1.09000 * 109.47442 * 299.99877 * 13 12 11 43 43 H 1.09006 * 109.47529 * 60.00016 * 13 12 11 44 44 H 0.96997 * 120.00126 * 180.02562 * 17 16 14 45 45 H 1.09007 * 109.46783 * 206.40614 * 23 22 8 46 46 H 1.08994 * 109.47085 * 326.40323 * 23 22 8 47 47 H 1.09005 * 111.12114 * 273.27651 * 26 24 23 48 48 H 1.08998 * 111.12296 * 37.43556 * 26 24 23 49 49 H 1.08999 * 110.87627 * 207.74910 * 27 26 24 50 50 H 1.09003 * 110.93358 * 84.25176 * 27 26 24 51 51 H 1.08999 * 109.83286 * 261.77128 * 28 27 26 52 52 H 1.09004 * 109.90332 * 140.84432 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3321 1.1346 5 6 4.0494 0.3205 0.9743 6 6 4.6734 0.0283 2.3146 7 6 4.7111 -1.2010 2.7655 8 6 3.5419 2.5952 1.2990 9 7 4.7456 2.9775 0.9430 10 7 4.9185 4.2145 1.2458 11 6 3.8444 4.6908 1.8090 12 6 3.6469 6.0993 2.3076 13 6 4.0867 6.1888 3.7702 14 6 3.8898 7.5973 4.2687 15 1 3.4906 8.3528 3.6084 16 6 4.2195 7.9213 5.5677 17 7 4.7062 7.0013 6.3716 18 14 3.9748 9.6670 6.1857 19 1 2.6123 9.8022 6.7605 20 1 4.9852 9.9681 7.2314 21 1 4.1324 10.6186 5.0565 22 7 2.9291 3.6765 1.8625 23 6 1.5719 3.7377 2.4107 24 6 1.5911 3.2847 3.8720 25 1 2.3003 3.8832 4.4437 26 6 0.1738 3.3960 4.4883 27 6 0.2663 2.3448 5.6292 28 6 1.1883 1.2707 5.0132 29 8 1.9313 1.8917 3.9576 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4026 -0.9313 35 1 3.6164 -0.5936 0.5681 36 1 4.8125 0.6954 0.2922 37 1 5.0894 0.8325 2.9034 38 1 5.1587 -1.4105 3.7259 39 1 4.2953 -2.0052 2.1767 40 1 4.2439 6.7847 1.7061 41 1 2.5937 6.3686 2.2277 42 1 3.4897 5.5033 4.3718 43 1 5.1399 5.9193 3.8501 44 1 4.9378 7.2291 7.2856 45 1 1.2024 4.7616 2.3526 46 1 0.9179 3.0823 1.8357 47 1 -0.0042 4.3951 4.8861 48 1 -0.5924 3.1215 3.7633 49 1 -0.7158 1.9296 5.8554 50 1 0.7176 2.7777 6.5220 51 1 0.5882 0.4541 4.6120 52 1 1.8719 0.8891 5.7716 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343930108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:22 Heat of formation + Delta-G solvation = 64.501831 kcal Electronic energy + Delta-G solvation = -32398.684793 eV Core-core repulsion = 28400.353684 eV Total energy + Delta-G solvation = -3998.331109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.98535 -40.34643 -39.32523 -36.48268 -35.75641 -35.14130 -34.11669 -33.23127 -33.03258 -31.27315 -30.13717 -27.82495 -27.31297 -26.87343 -25.61737 -23.77424 -22.90493 -22.47411 -22.08132 -21.14271 -20.94576 -20.35487 -18.66830 -18.24441 -17.65087 -17.51937 -17.08247 -16.76591 -16.53302 -16.50624 -16.12210 -15.63911 -15.48243 -15.10134 -15.02230 -14.41062 -14.36771 -14.26027 -13.99034 -13.92017 -13.61244 -13.43519 -13.22888 -12.98257 -12.84999 -12.67539 -12.60286 -12.57189 -12.31884 -12.22212 -12.13986 -11.95634 -11.89793 -11.78035 -11.71156 -11.50827 -11.29406 -11.08709 -10.69254 -10.58048 -10.38140 -10.35163 -10.19155 -9.21783 -8.19516 -6.32288 0.77454 1.03660 1.41984 1.44470 1.47562 1.54553 1.55320 1.85690 2.41872 2.76571 2.92040 3.14481 3.47431 3.50310 3.61168 3.68974 3.75197 3.90030 3.94533 4.04702 4.07925 4.12299 4.22892 4.24921 4.30739 4.37444 4.40962 4.50138 4.54619 4.66169 4.67143 4.74575 4.81763 4.81988 4.86001 4.90715 4.94945 4.97855 4.99405 5.07831 5.11197 5.24201 5.46450 5.56119 5.60102 5.65842 5.69740 5.73799 5.79026 5.86862 5.91230 6.11390 6.15869 6.27871 6.83706 7.37801 7.78761 8.92337 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.003589 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.728166 B = 7800.757618 C = 8569.247185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.158 4.158 3 C 0.086 3.914 4 N -0.430 5.430 5 C 0.096 3.904 6 C -0.151 4.151 7 C -0.166 4.166 8 C 0.367 3.633 9 N -0.362 5.362 10 N -0.334 5.334 11 C 0.193 3.807 12 C -0.015 4.015 13 C 0.046 3.954 14 C -0.536 4.536 15 H 0.074 0.926 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.260 1.260 22 N -0.466 5.466 23 C 0.115 3.885 24 C 0.064 3.936 25 H 0.034 0.966 26 C -0.135 4.135 27 C -0.149 4.149 28 C 0.048 3.952 29 O -0.375 6.375 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.122 0.878 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.098 0.902 42 H -0.004 1.004 43 H -0.025 1.025 44 H 0.262 0.738 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.060 0.940 51 H 0.088 0.912 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.704 -16.762 -9.296 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C -0.040 4.040 4 N -0.155 5.155 5 C -0.029 4.029 6 C -0.170 4.170 7 C -0.204 4.204 8 C 0.009 3.991 9 N -0.206 5.206 10 N -0.172 5.172 11 C -0.076 4.076 12 C -0.054 4.054 13 C 0.008 3.992 14 C -0.574 4.574 15 H 0.092 0.908 16 C -0.195 4.195 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.184 1.184 22 N -0.159 5.159 23 C -0.007 4.007 24 C 0.005 3.995 25 H 0.052 0.948 26 C -0.173 4.173 27 C -0.186 4.186 28 C -0.029 4.029 29 O -0.294 6.294 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.143 0.857 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.014 0.986 43 H -0.007 1.007 44 H 0.071 0.929 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.107 0.893 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.079 0.921 51 H 0.106 0.894 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.375 -17.081 -9.442 24.845 hybrid contribution -0.032 1.301 1.132 1.725 sum -15.407 -15.779 -8.311 23.567 Atomic orbital electron populations 1.24017 0.95186 1.03085 0.97738 1.22647 0.96269 0.96448 1.02224 1.21427 0.94032 0.98652 0.89905 1.58902 1.17696 0.96872 1.41987 1.21312 0.91689 0.94543 0.95398 1.22493 0.99976 0.97343 0.97152 1.23871 1.00059 0.95930 1.00501 1.22593 0.90033 0.88520 0.97919 1.74354 1.15807 1.05915 1.24505 1.73872 1.22061 1.03463 1.17824 1.25322 0.86269 0.94598 1.01419 1.20144 1.03252 0.84640 0.97394 1.18833 0.94095 0.96400 0.89909 1.21574 1.42823 0.95842 0.97197 0.90816 1.25978 0.94554 1.01760 0.97250 1.70143 1.44570 1.35733 1.06963 0.85423 0.78064 0.79279 0.78155 1.19230 1.21525 1.18394 1.46216 1.15125 1.09041 1.45516 1.22340 0.79179 1.05313 0.93852 1.23257 0.97445 0.84103 0.94695 0.94791 1.23222 0.94577 1.01105 0.98381 1.23103 1.01679 0.95781 0.98053 1.23204 0.93907 0.96349 0.89420 1.88600 1.66101 1.20517 1.54180 0.88131 0.86329 0.85882 0.90216 0.93121 0.86062 0.92970 0.92288 0.88464 0.85669 0.89441 0.88361 0.98603 1.00662 0.92931 0.85929 0.85948 0.89338 0.87171 0.86989 0.92094 0.89395 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 14.32 67.78 0.97 -0.86 16 2 C -0.16 -2.28 9.17 25.65 0.24 -2.05 16 3 C 0.09 1.75 5.27 85.56 0.45 2.20 16 4 N -0.43 -11.74 4.44 -714.68 -3.17 -14.91 16 5 C 0.10 2.48 5.10 85.56 0.44 2.92 16 6 C -0.15 -4.40 9.44 25.65 0.24 -4.16 16 7 C -0.17 -3.68 14.32 67.78 0.97 -2.71 16 8 C 0.37 13.10 6.29 260.11 1.64 14.73 16 9 N -0.36 -15.59 11.01 -58.01 -0.64 -16.23 16 10 N -0.33 -15.73 12.18 -49.53 -0.60 -16.33 16 11 C 0.19 8.16 7.32 137.64 1.01 9.17 16 12 C -0.01 -0.62 5.52 29.85 0.16 -0.45 16 13 C 0.05 2.45 4.96 29.85 0.15 2.60 16 14 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 15 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 16 C 0.00 0.14 5.46 84.66 0.46 0.61 16 17 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 18 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 N -0.47 -16.44 2.79 -514.84 -1.44 -17.88 16 23 C 0.11 3.04 5.76 86.38 0.50 3.54 16 24 C 0.06 1.87 3.68 31.26 0.12 1.99 16 25 H 0.03 1.38 6.68 -2.39 -0.02 1.36 16 26 C -0.13 -2.73 6.58 32.09 0.21 -2.52 16 27 C -0.15 -2.92 7.02 31.89 0.22 -2.69 16 28 C 0.05 1.10 7.80 72.45 0.56 1.67 16 29 O -0.37 -11.48 10.85 -148.98 -1.62 -13.10 16 30 H 0.10 1.04 7.84 -2.91 -0.02 1.01 16 31 H 0.12 0.95 8.06 -2.91 -0.02 0.92 16 32 H 0.12 1.51 6.74 -2.91 -0.02 1.49 16 33 H 0.08 1.56 6.36 -2.39 -0.02 1.55 16 34 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 35 H 0.12 2.17 5.78 -2.39 -0.01 2.16 16 36 H 0.05 1.54 7.27 -2.38 -0.02 1.53 16 37 H 0.06 2.29 8.03 -2.91 -0.02 2.27 16 38 H 0.10 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.13 1.96 7.84 -2.91 -0.02 1.94 16 40 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.10 3.45 7.20 -2.39 -0.02 3.43 16 42 H 0.00 -0.24 6.68 -2.39 -0.02 -0.26 16 43 H -0.03 -1.57 8.14 -2.38 -0.02 -1.59 16 44 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 45 H 0.12 2.81 7.15 -2.38 -0.02 2.79 16 46 H 0.12 2.51 6.73 -2.39 -0.02 2.49 16 47 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.11 1.54 8.06 -2.39 -0.02 1.52 16 49 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -77.91 422.16 4.30 -73.61 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.89 Total: 21.74 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 8.57 Total: -5.30 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -5.57 Total: -122.24 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.62 Total: -13.10 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -77.91 4.30 -73.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343930108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.112 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds