Wall clock time and date at job start Wed Apr 1 2020 04:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99750 * 2 1 4 4 N 1.46503 * 109.47197 * 125.00164 * 3 2 1 5 5 C 1.36733 * 127.13934 * 92.04178 * 4 3 2 6 6 C 1.50701 * 126.34875 * 359.97438 * 5 4 3 7 7 C 1.52996 * 109.47665 * 269.72003 * 6 5 4 8 8 C 1.50693 * 109.47519 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99947 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00368 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99708 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00130 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47054 * 180.02562 * 12 10 8 14 14 H 1.48504 * 109.47083 * 300.00379 * 12 10 8 15 15 H 1.48494 * 109.47150 * 60.00114 * 12 10 8 16 16 N 1.30299 * 107.30614 * 179.73593 * 5 4 3 17 17 N 1.28523 * 110.05348 * 0.26422 * 16 5 4 18 18 C 1.31224 * 109.86239 * 359.97438 * 17 16 5 19 19 N 1.38578 * 126.47591 * 180.02562 * 18 17 16 20 20 C 1.47901 * 110.99708 * 36.70551 * 19 18 17 21 21 C 1.53997 * 107.05890 * 214.15186 * 20 19 18 22 22 C 1.54599 * 105.13547 * 1.22853 * 21 20 19 23 23 H 1.09003 * 110.71932 * 263.59364 * 22 21 20 24 24 C 1.53002 * 110.72357 * 140.49345 * 22 21 20 25 25 H 1.08997 * 109.87024 * 300.44299 * 24 22 21 26 26 C 1.54095 * 109.88101 * 61.44924 * 24 22 21 27 27 C 1.54813 * 104.18765 * 121.45479 * 26 24 22 28 28 C 1.54995 * 102.09245 * 20.88169 * 27 26 24 29 29 O 1.43745 * 109.87907 * 179.28235 * 24 22 21 30 30 C 1.48531 * 111.00132 * 279.30883 * 19 18 17 31 31 H 1.07997 * 119.99752 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.99856 * 0.02562 * 1 2 3 33 33 H 1.07990 * 120.00245 * 179.97438 * 2 1 3 34 34 H 1.09004 * 109.47433 * 4.99743 * 3 2 1 35 35 H 1.09000 * 109.47043 * 244.99652 * 3 2 1 36 36 H 1.09002 * 109.47166 * 149.71287 * 6 5 4 37 37 H 1.09000 * 109.46581 * 29.72141 * 6 5 4 38 38 H 1.09011 * 109.46877 * 59.99428 * 7 6 5 39 39 H 1.09000 * 109.46801 * 300.00052 * 7 6 5 40 40 H 0.97002 * 119.99745 * 359.97438 * 11 10 8 41 41 H 1.08998 * 109.91969 * 333.50868 * 20 19 18 42 42 H 1.09006 * 109.91860 * 94.80455 * 20 19 18 43 43 H 1.09003 * 110.31065 * 120.13668 * 21 20 19 44 44 H 1.09001 * 110.31247 * 242.31366 * 21 20 19 45 45 H 1.08999 * 110.49439 * 240.12895 * 26 24 22 46 46 H 1.09005 * 110.49025 * 2.77959 * 26 24 22 47 47 H 1.09003 * 110.90959 * 139.08132 * 27 26 24 48 48 H 1.09002 * 110.91069 * 262.64794 * 27 26 24 49 49 H 1.08997 * 110.61711 * 81.47395 * 28 27 26 50 50 H 1.09001 * 110.61633 * 204.31668 * 28 27 26 51 51 H 1.09006 * 110.66653 * 278.15289 * 30 19 18 52 52 H 1.08993 * 110.66673 * 41.28451 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3026 0.9364 1.1335 6 6 5.0706 0.3837 -0.0394 7 6 4.9320 -1.1397 -0.0677 8 6 5.6994 -1.6923 -1.2409 9 1 6.2331 -1.0238 -1.9003 10 6 5.7212 -3.0514 -1.4720 11 7 5.0718 -3.8655 -0.6688 12 14 6.6731 -3.7365 -2.9260 13 1 6.5384 -5.2151 -2.9534 14 1 6.1304 -3.1670 -4.1856 15 1 8.1066 -3.3718 -2.7952 16 7 4.7643 1.1308 2.3364 17 7 3.8417 1.6133 3.0900 18 6 2.7329 1.7544 2.4025 19 7 1.5266 2.2449 2.8764 20 6 1.7442 3.3388 3.8477 21 6 0.6240 3.2384 4.8996 22 6 -0.2140 2.0086 4.4808 23 1 -1.0809 2.3140 3.8949 24 6 -0.6485 1.2059 5.7087 25 1 0.2290 0.8664 6.2590 26 6 -1.5327 2.0793 6.6197 27 6 -2.8660 1.2985 6.7160 28 6 -2.4302 -0.1375 6.3282 29 8 -1.4396 0.0773 5.3001 30 6 0.7764 1.1943 3.6110 31 1 -0.5399 -0.9353 -0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8500 -0.9352 0.0004 34 1 1.3585 2.1317 0.0895 35 1 2.6213 1.4026 -0.9314 36 1 6.1229 0.6511 0.0567 37 1 4.6724 0.8020 -0.9639 38 1 3.8796 -1.4071 -0.1638 39 1 5.3301 -1.5579 0.8569 40 1 4.5778 -3.5098 0.0865 41 1 2.7158 3.2215 4.3276 42 1 1.6916 4.3021 3.3401 43 1 1.0491 3.0864 5.8917 44 1 0.0089 4.1382 4.8844 45 1 -1.0794 2.1831 7.6056 46 1 -1.6955 3.0581 6.1686 47 1 -3.2596 1.3245 7.7322 48 1 -3.5971 1.6882 6.0077 49 1 -1.9902 -0.6494 7.1841 50 1 -3.2761 -0.7030 5.9374 51 1 0.2380 0.5493 2.9165 52 1 1.4486 0.6094 4.2387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351656975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:28 Heat of formation + Delta-G solvation = 49.887438 kcal Electronic energy + Delta-G solvation = -31254.682227 eV Core-core repulsion = 27255.717390 eV Total energy + Delta-G solvation = -3998.964836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.67262 -40.23072 -38.53045 -36.05319 -34.47137 -33.38963 -32.59162 -32.30279 -31.38619 -29.76897 -28.49434 -27.32142 -26.60439 -24.80171 -23.36740 -22.65935 -22.02873 -21.95448 -20.81188 -20.57751 -19.97340 -19.47226 -17.45066 -16.95163 -16.81620 -16.36139 -16.28376 -15.84965 -15.30341 -15.02615 -14.88709 -14.19057 -13.98364 -13.94529 -13.72864 -13.60093 -13.34728 -13.15512 -13.08513 -12.59194 -12.37851 -12.18391 -12.10927 -11.91646 -11.84440 -11.65230 -11.47209 -11.40128 -11.25416 -11.11945 -10.94834 -10.87262 -10.79261 -10.41634 -10.30291 -10.09999 -10.06687 -9.96939 -9.83306 -9.51451 -9.05096 -8.67591 -8.36028 -8.26227 -6.39525 -4.10102 1.91704 2.11951 2.71569 3.18886 3.42920 3.44823 3.45379 3.63760 3.81274 4.16805 4.26362 4.38073 4.49578 4.51866 4.55523 4.66682 4.75418 4.82385 4.87960 4.93264 4.95418 5.16678 5.20203 5.22693 5.25805 5.31993 5.36036 5.38213 5.40001 5.42757 5.45335 5.48274 5.51777 5.59313 5.68803 5.71682 5.82508 5.87607 5.93074 5.98409 6.22550 6.25604 6.34196 6.46905 6.54174 6.59930 6.60105 6.67953 6.88556 7.29509 7.40174 7.44721 8.11165 8.40989 8.82416 9.11217 9.62520 11.00780 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.002530 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.015170 B =11064.636221 C =11822.819342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.173 4.173 3 C 0.143 3.857 4 N -0.461 5.461 5 C 0.212 3.788 6 C -0.024 4.024 7 C 0.020 3.980 8 C -0.604 4.604 9 H 0.052 0.948 10 C 0.017 3.983 11 N -0.909 5.909 12 Si 1.069 2.931 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.287 1.287 16 N -0.296 5.296 17 N -0.318 5.318 18 C 0.323 3.677 19 N -0.442 5.442 20 C 0.045 3.955 21 C -0.120 4.120 22 C -0.085 4.085 23 H 0.092 0.908 24 C 0.085 3.915 25 H 0.070 0.930 26 C -0.151 4.151 27 C -0.156 4.156 28 C 0.045 3.955 29 O -0.369 6.369 30 C 0.057 3.943 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.007 0.993 39 H 0.015 0.985 40 H 0.269 0.731 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.559 15.196 11.711 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.192 4.192 3 C 0.020 3.980 4 N -0.154 5.154 5 C -0.056 4.056 6 C -0.064 4.064 7 C -0.018 4.018 8 C -0.642 4.642 9 H 0.070 0.930 10 C -0.187 4.187 11 N -0.545 5.545 12 Si 0.897 3.103 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.213 1.213 16 N -0.136 5.136 17 N -0.162 5.162 18 C -0.034 4.034 19 N -0.167 5.167 20 C -0.082 4.082 21 C -0.159 4.159 22 C -0.105 4.105 23 H 0.111 0.889 24 C 0.027 3.973 25 H 0.088 0.912 26 C -0.188 4.188 27 C -0.193 4.193 28 C -0.032 4.032 29 O -0.288 6.288 30 C -0.070 4.070 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.110 0.890 51 H 0.108 0.892 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.431 13.917 11.430 25.064 hybrid contribution -0.987 1.195 0.533 1.640 sum -18.419 15.112 11.964 26.660 Atomic orbital electron populations 1.23863 0.95398 1.02152 0.98838 1.23239 0.96413 0.98464 1.01100 1.20903 0.91762 0.97431 0.87857 1.46294 1.11109 1.48305 1.09664 1.25626 0.81744 0.99530 0.98655 1.20295 0.98068 0.99113 0.88913 1.19206 0.96767 0.87833 0.98038 1.21952 1.34855 0.94754 1.12640 0.92960 1.25856 0.97195 0.93674 1.02000 1.70784 1.30172 1.37950 1.15588 0.83538 0.75800 0.76248 0.74683 1.20774 1.21416 1.21304 1.74027 1.22883 1.16820 0.99848 1.74415 0.97768 1.18490 1.25521 1.22368 0.93785 1.03489 0.83772 1.61460 1.11579 1.08545 1.35145 1.22889 0.99572 0.93880 0.91866 1.22426 0.96552 0.97932 0.98945 1.22201 0.98361 0.94483 0.95423 0.88948 1.22784 0.94198 0.86181 0.94114 0.91183 1.23004 0.95433 1.00039 1.00361 1.23137 0.97788 0.95890 1.02510 1.23547 0.91754 0.96418 0.91468 1.88936 1.46897 1.48853 1.44130 1.23284 0.94796 0.92999 0.95882 0.87842 0.88313 0.86019 0.88226 0.87830 0.89158 0.91068 0.97491 0.96642 0.92106 0.90664 0.89923 0.90644 0.90349 0.90556 0.90039 0.90296 0.90457 0.92213 0.88954 0.89157 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 14.32 29.02 0.42 -1.55 16 2 C -0.17 -2.54 9.85 -36.02 -0.35 -2.89 16 3 C 0.14 2.02 6.48 -5.19 -0.03 1.99 16 4 N -0.46 -8.08 2.79 -115.36 -0.32 -8.40 16 5 C 0.21 4.32 7.32 -154.02 -1.13 3.19 16 6 C -0.02 -0.50 5.53 -27.88 -0.15 -0.66 16 7 C 0.02 0.50 4.27 -27.89 -0.12 0.38 16 8 C -0.60 -16.81 9.11 -34.44 -0.31 -17.13 16 9 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 10 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 11 N -0.91 -27.87 13.65 55.43 0.76 -27.12 16 12 Si 1.07 25.04 29.90 -169.99 -5.08 19.95 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 16 N -0.30 -6.57 12.18 32.99 0.40 -6.16 16 17 N -0.32 -6.43 11.08 30.32 0.34 -6.09 16 18 C 0.32 5.60 6.69 -318.86 -2.13 3.47 16 19 N -0.44 -6.02 5.31 -170.55 -0.91 -6.92 16 20 C 0.05 0.51 6.63 -2.75 -0.02 0.49 16 21 C -0.12 -0.99 5.62 -25.37 -0.14 -1.13 16 22 C -0.09 -0.80 2.68 -88.76 -0.24 -1.04 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 C 0.09 0.77 2.82 -26.16 -0.07 0.69 16 25 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 26 C -0.15 -0.95 6.23 -25.20 -0.16 -1.10 16 27 C -0.16 -0.91 7.15 -24.72 -0.18 -1.08 16 28 C 0.04 0.34 7.72 38.21 0.29 0.63 16 29 O -0.37 -4.01 11.06 -35.23 -0.39 -4.40 16 30 C 0.06 0.74 5.83 -1.90 -0.01 0.73 16 31 H 0.10 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.10 0.99 7.84 -52.49 -0.41 0.58 16 33 H 0.12 2.17 6.89 -52.49 -0.36 1.81 16 34 H 0.10 1.19 7.79 -51.93 -0.40 0.79 16 35 H 0.10 1.39 7.19 -51.93 -0.37 1.02 16 36 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.07 1.34 7.22 -51.93 -0.38 0.97 16 38 H 0.01 0.18 6.84 -51.92 -0.36 -0.17 16 39 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 40 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 41 H 0.07 1.00 6.92 -51.93 -0.36 0.64 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.57 7.85 -51.93 -0.41 0.17 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.45 7.30 -51.93 -0.38 0.07 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 52 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 LS Contribution 415.31 15.07 6.26 6.26 Total: -1.00 -33.88 415.31 -12.21 -46.09 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.82 Total: 1.41 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -4.44 Total: -14.62 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.27 Total: -54.70 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.39 Total: -4.40 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.95 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.88 -12.21 -46.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351656975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.982 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds