Wall clock time and date at job start Wed Apr 1 2020 04:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99783 * 2 1 4 4 N 1.46501 * 109.47209 * 124.99795 * 3 2 1 5 5 C 1.36736 * 127.13710 * 95.10830 * 4 3 2 6 6 C 1.50699 * 126.34758 * 0.02562 * 5 4 3 7 7 C 1.53002 * 109.47251 * 89.99791 * 6 5 4 8 8 H 1.09003 * 109.47019 * 55.00095 * 7 6 5 9 9 O 1.42901 * 109.47071 * 295.00009 * 7 6 5 10 10 C 1.53004 * 109.46892 * 175.00117 * 7 6 5 11 11 C 1.53000 * 117.49734 * 185.00350 * 10 7 6 12 12 C 1.53003 * 60.03267 * 252.49990 * 11 10 7 13 13 N 1.30288 * 107.30543 * 180.28506 * 5 4 3 14 14 N 1.28529 * 110.05899 * 359.55842 * 13 5 4 15 15 C 1.31225 * 109.85279 * 0.45444 * 14 13 5 16 16 N 1.38579 * 126.47169 * 179.69094 * 15 14 13 17 17 C 1.46852 * 110.99841 * 63.37216 * 16 15 14 18 18 C 1.53039 * 109.52155 * 174.15769 * 17 16 15 19 19 C 1.53123 * 109.27541 * 59.18047 * 18 17 16 20 20 C 1.50703 * 109.52009 * 182.43850 * 19 18 17 21 21 H 1.07999 * 119.99961 * 119.67629 * 20 19 18 22 22 C 1.37871 * 119.99985 * 299.68381 * 20 19 18 23 23 N 1.31510 * 120.00288 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99939 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46942 * 59.99990 * 24 22 20 26 26 H 1.48506 * 109.47295 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47545 * 299.99745 * 24 22 20 28 28 C 1.53116 * 109.16034 * 302.34166 * 19 18 17 29 29 C 1.46842 * 111.00179 * 299.16224 * 16 15 14 30 30 H 1.07999 * 120.00081 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00095 * 0.02562 * 1 2 3 32 32 H 1.08002 * 120.00095 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47434 * 4.99998 * 3 2 1 34 34 H 1.09003 * 109.47217 * 244.99554 * 3 2 1 35 35 H 1.09002 * 109.47336 * 329.99484 * 6 5 4 36 36 H 1.09003 * 109.47279 * 209.99823 * 6 5 4 37 37 H 0.96700 * 113.99498 * 300.00190 * 9 7 6 38 38 H 1.09001 * 115.55292 * 330.66683 * 10 7 6 39 39 H 1.09003 * 117.49856 * 359.97438 * 11 10 7 40 40 H 1.08993 * 117.50403 * 144.99388 * 11 10 7 41 41 H 1.08997 * 117.50727 * 107.49846 * 12 11 10 42 42 H 1.08998 * 117.49368 * 252.52847 * 12 11 10 43 43 H 1.08996 * 109.45822 * 294.17561 * 17 16 15 44 44 H 1.09000 * 109.46412 * 54.14473 * 17 16 15 45 45 H 1.08994 * 109.50489 * 299.23702 * 18 17 16 46 46 H 1.08997 * 109.50218 * 179.11417 * 18 17 16 47 47 H 1.08991 * 109.52738 * 62.24963 * 19 18 17 48 48 H 0.97000 * 120.00719 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.50393 * 297.71644 * 28 19 18 50 50 H 1.09002 * 109.50423 * 177.59988 * 28 19 18 51 51 H 1.09005 * 109.45770 * 305.84991 * 29 16 15 52 52 H 1.08994 * 109.46540 * 65.82203 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3178 0.9910 1.1198 6 6 5.1062 0.5116 -0.0717 7 6 5.7213 1.7125 -0.7930 8 1 6.3121 2.2967 -0.0874 9 8 4.6797 2.5288 -1.3325 10 6 6.6222 1.2196 -1.9272 11 6 7.4253 2.2690 -2.6984 12 6 6.2238 1.5894 -3.3582 13 7 4.7702 1.1520 2.3310 14 7 3.8316 1.5772 3.0992 15 6 2.7184 1.7020 2.4157 16 7 1.4942 2.1283 2.9057 17 6 1.5718 3.5157 3.3808 18 6 0.1751 3.9992 3.7777 19 6 -0.3792 3.0927 4.8803 20 6 -1.7783 3.5273 5.2335 21 1 -2.6037 2.8417 5.1115 22 6 -2.0045 4.8003 5.7123 23 7 -0.9993 5.6351 5.8613 24 14 -3.7388 5.3392 6.1496 25 1 -4.2787 4.4546 7.2132 26 1 -3.7131 6.7413 6.6383 27 1 -4.6033 5.2501 4.9455 28 6 -0.4043 1.6469 4.3768 29 6 1.0092 1.2315 3.9625 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 4.4449 -0.0225 -0.7540 36 1 5.8997 -0.1568 0.2627 37 1 4.1129 2.0728 -1.9696 38 1 7.0868 0.2463 -1.7694 39 1 7.3115 3.3106 -2.3979 40 1 8.4182 1.9862 -3.0478 41 1 5.3198 2.1836 -3.4917 42 1 6.4264 0.8589 -4.1415 43 1 2.2333 3.5669 4.2455 44 1 1.9636 4.1504 2.5859 45 1 -0.4834 3.9613 2.9100 46 1 0.2355 5.0236 4.1450 47 1 0.2578 3.1603 5.7621 48 1 -1.1583 6.5306 6.1985 49 1 -1.0720 1.5719 3.5185 50 1 -0.7580 0.9907 5.1721 51 1 0.9922 0.2072 3.5901 52 1 1.6733 1.2935 4.8245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355859376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:06 Heat of formation + Delta-G solvation = 75.781111 kcal Electronic energy + Delta-G solvation = -31514.499194 eV Core-core repulsion = 27516.657191 eV Total energy + Delta-G solvation = -3997.842002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.80552 -39.30293 -38.24054 -36.22073 -35.49842 -34.09253 -32.94832 -32.31047 -31.11601 -29.92216 -28.32105 -26.86837 -25.68810 -24.76859 -22.81426 -22.65333 -22.17126 -21.07995 -20.95694 -20.73072 -19.95995 -18.53418 -17.52166 -17.01602 -16.52829 -16.44897 -16.12825 -15.70461 -15.49672 -14.97660 -14.65352 -14.52156 -14.07007 -13.87742 -13.59229 -13.37528 -13.06516 -12.80050 -12.58709 -12.49266 -12.44204 -12.34903 -11.90829 -11.69762 -11.62325 -11.56424 -11.32120 -11.01512 -10.94760 -10.87374 -10.66296 -10.58291 -10.44398 -10.32334 -10.27151 -10.13279 -9.94114 -9.71839 -9.52313 -9.06361 -8.80100 -8.66772 -8.30641 -8.23570 -5.97663 -4.03478 1.77125 1.93295 2.62631 3.01355 3.30781 3.32553 3.37778 3.39823 3.82177 4.08928 4.16733 4.35241 4.44754 4.48323 4.52976 4.54641 4.62305 4.70454 4.88622 4.90940 4.97434 5.24679 5.29224 5.32339 5.39344 5.41491 5.48141 5.51866 5.65596 5.68636 5.69096 5.75588 5.81621 5.96175 6.02078 6.14846 6.21624 6.24921 6.34080 6.46125 6.47688 6.55017 6.75785 6.81032 6.96185 7.08854 7.18996 7.38490 7.41968 7.70562 7.77513 8.00947 8.11156 8.45393 8.95773 8.99834 9.61080 11.08669 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.002480 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.730034 B =11287.188826 C =11518.439103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.192 4.192 3 C 0.147 3.853 4 N -0.454 5.454 5 C 0.172 3.828 6 C -0.055 4.055 7 C 0.141 3.859 8 H 0.111 0.889 9 O -0.552 6.552 10 C -0.193 4.193 11 C -0.168 4.168 12 C -0.178 4.178 13 N -0.290 5.290 14 N -0.316 5.316 15 C 0.368 3.632 16 N -0.463 5.463 17 C 0.070 3.930 18 C -0.102 4.102 19 C 0.047 3.953 20 C -0.511 4.511 21 H 0.054 0.946 22 C 0.061 3.939 23 N -0.891 5.891 24 Si 0.890 3.110 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 C -0.104 4.104 29 C 0.075 3.925 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.368 0.632 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.043 0.957 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.099 0.901 47 H 0.025 0.975 48 H 0.261 0.739 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.056 0.944 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.545 -11.339 -20.289 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.211 4.211 3 C 0.025 3.975 4 N -0.147 5.147 5 C -0.096 4.096 6 C -0.095 4.095 7 C 0.081 3.919 8 H 0.129 0.871 9 O -0.358 6.358 10 C -0.211 4.211 11 C -0.205 4.205 12 C -0.215 4.215 13 N -0.131 5.131 14 N -0.160 5.160 15 C 0.012 3.988 16 N -0.190 5.190 17 C -0.057 4.057 18 C -0.140 4.140 19 C 0.028 3.972 20 C -0.549 4.549 21 H 0.073 0.927 22 C -0.140 4.140 23 N -0.530 5.530 24 Si 0.718 3.282 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.204 1.204 28 C -0.142 4.142 29 C -0.052 4.052 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.217 0.783 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.043 0.957 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.453 -10.674 -19.039 25.130 hybrid contribution -1.508 -0.190 -0.601 1.635 sum 10.945 -10.865 -19.639 24.971 Atomic orbital electron populations 1.24008 0.95546 1.02790 0.95611 1.22959 0.96461 0.97442 1.04199 1.20853 0.91791 0.97823 0.87055 1.46266 1.09505 1.49257 1.09621 1.24305 0.82461 1.05263 0.97568 1.20675 0.98938 0.98497 0.91427 1.21476 0.87210 0.90764 0.92460 0.87121 1.86733 1.44941 1.41487 1.62628 1.23131 1.04014 1.00746 0.93227 1.22918 0.95886 0.98266 1.03433 1.22986 1.00156 1.03819 0.94506 1.73956 1.23746 1.16465 0.98882 1.74682 0.96951 1.19005 1.25323 1.22701 0.93209 1.00278 0.82647 1.58939 1.17039 1.05105 1.37961 1.22388 1.01407 0.83919 0.97947 1.21725 0.90376 1.03251 0.98654 1.18705 0.96462 0.88441 0.93555 1.21120 0.93040 0.97949 1.42838 0.92738 1.24966 0.96696 0.96791 0.95514 1.69850 1.30267 1.06714 1.46128 0.86694 0.85143 0.77570 0.78770 1.20364 1.21379 1.20355 1.21712 0.92443 1.00164 0.99859 1.22159 0.98252 0.93689 0.91069 0.87911 0.87503 0.87330 0.87737 0.88841 0.89728 0.87376 0.78322 0.86871 0.88344 0.88776 0.88103 0.88762 0.93824 0.92678 0.93697 0.88283 0.95654 0.92940 0.92378 0.92458 0.92578 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 14.32 29.01 0.42 -0.92 16 2 C -0.19 -1.85 9.85 -36.03 -0.35 -2.21 16 3 C 0.15 1.54 6.39 -5.19 -0.03 1.51 16 4 N -0.45 -6.42 2.79 -115.37 -0.32 -6.74 16 5 C 0.17 2.35 7.09 -154.02 -1.09 1.26 16 6 C -0.06 -0.47 5.02 -27.88 -0.14 -0.61 16 7 C 0.14 1.15 3.30 -26.73 -0.09 1.06 16 8 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 9 O -0.55 -4.85 11.40 -35.23 -0.40 -5.26 16 10 C -0.19 -1.17 5.74 -90.58 -0.52 -1.69 16 11 C -0.17 -1.08 10.23 -26.73 -0.27 -1.35 16 12 C -0.18 -0.96 9.71 -26.69 -0.26 -1.22 16 13 N -0.29 -5.15 12.18 32.99 0.40 -4.75 16 14 N -0.32 -6.31 12.19 30.32 0.37 -5.94 16 15 C 0.37 6.62 6.41 -318.87 -2.05 4.57 16 16 N -0.46 -8.62 4.67 -174.55 -0.82 -9.43 16 17 C 0.07 1.43 5.39 -3.83 -0.02 1.41 16 18 C -0.10 -2.35 5.12 -26.65 -0.14 -2.49 16 19 C 0.05 1.14 2.16 -91.65 -0.20 0.95 16 20 C -0.51 -13.71 8.56 -34.44 -0.29 -14.00 16 21 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 22 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 23 N -0.89 -25.16 11.37 55.43 0.63 -24.52 16 24 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C -0.10 -2.12 5.32 -26.65 -0.14 -2.26 16 29 C 0.08 1.42 5.37 -3.84 -0.02 1.40 16 30 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.11 1.05 7.84 -52.49 -0.41 0.64 16 32 H 0.11 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.10 1.21 7.79 -51.93 -0.40 0.81 16 34 H 0.09 0.69 5.37 -51.93 -0.28 0.41 16 35 H 0.08 0.52 7.78 -51.93 -0.40 0.11 16 36 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.37 1.97 6.44 45.56 0.29 2.27 16 38 H 0.11 0.57 8.07 -51.93 -0.42 0.15 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.53 6.48 -51.93 -0.34 0.19 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.10 2.56 6.17 -51.93 -0.32 2.24 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 52 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 414.63 15.07 6.25 6.25 Total: -1.00 -31.94 414.63 -12.37 -44.31 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.16 Total: 3.06 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -5.30 Total: -13.00 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.26 Total: -51.39 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.40 Total: -5.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.94 -12.37 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355859376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.089 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds