Wall clock time and date at job start Wed Apr 1 2020 04:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00110 * 2 1 4 4 N 1.46500 * 109.47154 * 125.00152 * 3 2 1 5 5 C 1.36731 * 127.13675 * 264.88925 * 4 3 2 6 6 C 1.50696 * 126.35083 * 359.95925 * 5 4 3 7 7 C 1.53008 * 109.47065 * 270.29388 * 6 5 4 8 8 H 1.08997 * 109.46850 * 304.99047 * 7 6 5 9 9 O 1.42897 * 109.47073 * 64.99576 * 7 6 5 10 10 C 1.53005 * 109.47003 * 184.99910 * 7 6 5 11 11 C 1.53000 * 117.49663 * 248.62153 * 10 7 6 12 12 C 1.52994 * 117.49941 * 180.02562 * 10 7 6 13 13 N 1.30297 * 107.30580 * 180.22676 * 5 4 3 14 14 N 1.28534 * 110.05347 * 359.76972 * 13 5 4 15 15 C 1.31217 * 109.85852 * 0.02562 * 14 13 5 16 16 N 1.38575 * 126.47500 * 179.97438 * 15 14 13 17 17 C 1.46847 * 111.00030 * 36.11344 * 16 15 14 18 18 C 1.53031 * 109.52653 * 174.16451 * 17 16 15 19 19 C 1.53116 * 109.28231 * 59.17907 * 18 17 16 20 20 C 1.50700 * 109.52796 * 182.44397 * 19 18 17 21 21 H 1.07992 * 119.99972 * 119.68006 * 20 19 18 22 22 C 1.37877 * 119.99511 * 299.68524 * 20 19 18 23 23 N 1.31507 * 120.00390 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99645 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47252 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46910 * 119.99883 * 24 22 20 27 27 H 1.48499 * 109.47332 * 239.99807 * 24 22 20 28 28 C 1.53121 * 109.15945 * 302.35163 * 19 18 17 29 29 C 1.46850 * 110.99872 * 271.90579 * 16 15 14 30 30 H 1.08004 * 119.99841 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00078 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99754 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47056 * 5.00002 * 3 2 1 34 34 H 1.08996 * 109.46755 * 245.00177 * 3 2 1 35 35 H 1.08999 * 109.46867 * 30.28979 * 6 5 4 36 36 H 1.08996 * 109.47696 * 150.29088 * 6 5 4 37 37 H 0.96704 * 113.99976 * 60.00538 * 9 7 6 38 38 H 1.08997 * 115.55085 * 34.32378 * 10 7 6 39 39 H 1.08998 * 117.49904 * 0.02562 * 11 10 7 40 40 H 1.08995 * 117.49906 * 145.01882 * 11 10 7 41 41 H 1.09003 * 117.49779 * 214.97794 * 12 10 7 42 42 H 1.09003 * 117.50028 * 359.97438 * 12 10 7 43 43 H 1.09000 * 109.46426 * 294.18544 * 17 16 15 44 44 H 1.09005 * 109.46206 * 54.14822 * 17 16 15 45 45 H 1.08997 * 109.50829 * 179.12592 * 18 17 16 46 46 H 1.09007 * 109.49970 * 299.23716 * 18 17 16 47 47 H 1.08996 * 109.51757 * 62.24845 * 19 18 17 48 48 H 0.97005 * 120.00662 * 179.97438 * 23 22 20 49 49 H 1.09010 * 109.50204 * 297.70870 * 28 19 18 50 50 H 1.09004 * 109.50282 * 177.59633 * 28 19 18 51 51 H 1.08995 * 109.46140 * 305.85488 * 29 16 15 52 52 H 1.09006 * 109.45938 * 65.82465 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7775 1.8802 2.3651 6 6 1.5244 2.5799 2.8244 7 6 1.6287 4.0732 2.5074 8 1 2.5389 4.4761 2.9515 9 8 1.6675 4.2579 1.0910 10 6 0.4138 4.8030 3.0840 11 6 -0.5978 5.3826 2.0932 12 6 0.3317 6.3158 2.8707 13 7 3.8579 1.6906 3.0684 14 7 4.7336 1.0604 2.3697 15 6 4.2550 0.8126 1.1733 16 7 4.9087 0.1525 0.1451 17 6 5.7499 -0.9321 0.6669 18 6 6.3397 -1.7283 -0.4994 19 6 7.1704 -0.7924 -1.3817 20 6 7.7047 -1.5577 -2.5648 21 1 7.4384 -1.2571 -3.5673 22 6 8.5333 -2.6419 -2.3673 23 7 8.8578 -3.0077 -1.1465 24 14 9.1949 -3.5911 -3.8338 25 1 8.6855 -2.9818 -5.0886 26 1 10.6791 -3.5412 -3.8270 27 1 8.7468 -5.0045 -3.7518 28 6 6.2829 0.3547 -1.8727 29 6 5.6947 1.0905 -0.6666 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9352 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6212 1.4025 -0.9314 35 1 0.6625 2.1581 2.3073 36 1 1.4054 2.4441 3.8993 37 1 0.8871 3.9220 0.6290 38 1 0.0282 4.4052 4.0226 39 1 -0.3981 5.2436 1.0307 40 1 -1.6493 5.3660 2.3799 41 1 -0.1080 6.9135 3.6692 42 1 1.1434 6.7912 2.3200 43 1 6.5582 -0.5098 1.2639 44 1 5.1461 -1.5928 1.2891 45 1 6.9764 -2.5236 -0.1121 46 1 5.5321 -2.1625 -1.0888 47 1 8.0009 -0.3882 -0.8029 48 1 9.4405 -3.7707 -1.0075 49 1 5.4743 -0.0467 -2.4838 50 1 6.8791 1.0476 -2.4665 51 1 5.0508 1.8989 -1.0128 52 1 6.5033 1.5034 -0.0634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355859377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:08 Heat of formation + Delta-G solvation = 58.493810 kcal Electronic energy + Delta-G solvation = -31481.655817 eV Core-core repulsion = 27483.064181 eV Total energy + Delta-G solvation = -3998.591636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.04701 -40.08423 -39.75244 -37.18737 -36.12796 -35.82043 -33.89199 -33.69089 -32.62864 -31.65635 -29.58586 -27.91126 -27.40323 -25.61180 -24.40069 -23.94594 -23.25214 -22.33614 -21.83155 -21.46834 -20.80159 -20.33723 -18.60996 -18.39400 -17.76822 -17.50357 -17.35917 -16.72998 -16.51945 -16.16979 -15.92724 -15.57632 -15.40394 -15.04710 -14.64782 -14.62018 -14.53607 -14.29030 -14.18471 -13.63647 -13.52750 -13.27233 -13.00578 -12.94979 -12.79423 -12.64022 -12.46581 -12.40747 -12.29451 -12.18306 -12.14570 -12.01168 -11.68869 -11.45074 -11.39537 -11.17364 -11.08127 -10.95653 -10.91054 -10.74639 -10.51020 -10.41701 -10.25668 -9.53291 -8.07448 -6.20960 0.68486 0.94887 1.41720 1.43860 1.54885 1.59672 1.74454 2.44747 2.73137 2.86587 3.13393 3.20267 3.42900 3.65600 3.75057 3.82110 3.87657 3.89401 3.98102 4.09056 4.09162 4.14806 4.29632 4.33509 4.40283 4.43884 4.48869 4.51719 4.57232 4.61832 4.69133 4.73431 4.83835 4.86293 4.93797 4.97454 5.02575 5.08174 5.10500 5.18192 5.19773 5.28258 5.33181 5.47036 5.57013 5.59261 5.64984 5.71337 5.76297 5.97741 6.11934 6.29602 6.37630 6.73612 6.90662 7.47347 7.70266 8.97950 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.002401 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.663227 B =11659.023266 C =11885.247168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.201 4.201 3 C 0.142 3.858 4 N -0.450 5.450 5 C 0.197 3.803 6 C -0.052 4.052 7 C 0.150 3.850 8 H 0.082 0.918 9 O -0.568 6.568 10 C -0.188 4.188 11 C -0.164 4.164 12 C -0.184 4.184 13 N -0.332 5.332 14 N -0.360 5.360 15 C 0.348 3.652 16 N -0.450 5.450 17 C 0.091 3.909 18 C -0.090 4.090 19 C 0.042 3.958 20 C -0.526 4.526 21 H 0.058 0.942 22 C 0.010 3.990 23 N -0.919 5.919 24 Si 0.955 3.045 25 H -0.264 1.264 26 H -0.284 1.284 27 H -0.282 1.282 28 C -0.092 4.092 29 C 0.078 3.922 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.384 0.616 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.024 0.976 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.043 0.957 47 H -0.012 1.012 48 H 0.260 0.740 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.086 0.914 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.610 14.870 4.729 30.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.220 4.220 3 C 0.022 3.978 4 N -0.142 5.142 5 C -0.072 4.072 6 C -0.092 4.092 7 C 0.089 3.911 8 H 0.100 0.900 9 O -0.377 6.377 10 C -0.206 4.206 11 C -0.200 4.200 12 C -0.221 4.221 13 N -0.172 5.172 14 N -0.204 5.204 15 C -0.010 4.010 16 N -0.176 5.176 17 C -0.036 4.036 18 C -0.128 4.128 19 C 0.024 3.976 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.188 4.188 23 N -0.559 5.559 24 Si 0.781 3.219 25 H -0.188 1.188 26 H -0.211 1.211 27 H -0.208 1.208 28 C -0.130 4.130 29 C -0.049 4.049 30 H 0.129 0.871 31 H 0.151 0.849 32 H 0.106 0.894 33 H 0.149 0.851 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.235 0.765 38 H 0.146 0.854 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.006 0.994 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.104 0.896 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -25.319 14.834 5.775 29.907 hybrid contribution 0.580 -1.009 -1.070 1.581 sum -24.739 13.825 4.705 28.728 Atomic orbital electron populations 1.24191 0.94221 1.04250 0.94933 1.22956 0.97059 0.97214 1.04781 1.21186 0.91487 0.98175 0.86965 1.46377 1.11807 1.42615 1.13414 1.25259 0.99736 1.00192 0.81980 1.20973 0.89141 0.94243 1.04823 1.21244 0.97643 0.91195 0.80977 0.89997 1.86709 1.47596 1.84548 1.18871 1.22997 0.98724 0.96355 1.02538 1.23055 0.96442 1.02495 0.98055 1.22936 1.03020 0.92304 1.03804 1.73869 0.99821 1.16520 1.26968 1.74569 1.24499 1.17567 1.03719 1.22627 0.86242 0.99002 0.93117 1.58863 1.31594 1.10345 1.16793 1.21936 0.93630 0.90915 0.97127 1.21465 0.97631 0.98910 0.94815 1.18685 0.92351 0.92374 0.94212 1.21541 1.28581 1.13058 0.93266 0.92378 1.25771 0.96577 0.98365 0.98091 1.70026 1.36748 1.27560 1.21578 0.85556 0.77816 0.78421 0.80151 1.18824 1.21053 1.20751 1.21546 0.98775 0.97368 0.95313 1.22150 0.94874 0.93512 0.94385 0.87118 0.84924 0.89385 0.85117 0.88410 0.86312 0.86144 0.76503 0.85421 0.87649 0.87231 0.88057 0.89927 0.95801 0.92076 0.91337 0.93845 0.99416 0.93109 0.91454 0.91537 0.89582 0.95962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 14.32 67.78 0.97 -0.43 16 2 C -0.20 -3.52 9.85 25.65 0.25 -3.27 16 3 C 0.14 2.54 6.40 85.63 0.55 3.09 16 4 N -0.45 -12.02 2.79 -518.92 -1.45 -13.47 16 5 C 0.20 5.13 7.09 137.64 0.98 6.10 16 6 C -0.05 -0.71 5.04 29.85 0.15 -0.56 16 7 C 0.15 1.99 3.32 30.60 0.10 2.09 16 8 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 9 O -0.57 -7.72 11.48 -148.98 -1.71 -9.43 16 10 C -0.19 -1.58 5.71 -10.79 -0.06 -1.64 16 11 C -0.16 -0.99 9.73 30.58 0.30 -0.69 16 12 C -0.18 -1.84 10.19 30.57 0.31 -1.53 16 13 N -0.33 -11.96 12.18 -49.54 -0.60 -12.56 16 14 N -0.36 -14.85 11.69 -58.00 -0.68 -15.53 16 15 C 0.35 12.61 6.71 260.11 1.75 14.36 16 16 N -0.45 -17.04 4.67 -706.15 -3.30 -20.34 16 17 C 0.09 3.97 5.09 86.32 0.44 4.41 16 18 C -0.09 -4.37 5.12 30.64 0.16 -4.22 16 19 C 0.04 2.14 2.16 -11.46 -0.02 2.12 16 20 C -0.53 -28.79 8.56 25.60 0.22 -28.58 16 21 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 22 C 0.01 0.57 5.31 84.66 0.45 1.02 16 23 N -0.92 -53.87 11.37 21.45 0.24 -53.62 16 24 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 28 C -0.09 -3.75 5.32 30.65 0.16 -3.58 16 29 C 0.08 2.88 5.40 86.32 0.47 3.35 16 30 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 31 H 0.13 0.43 7.84 -2.91 -0.02 0.41 16 32 H 0.09 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.13 1.22 4.98 -2.39 -0.01 1.20 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.12 0.85 7.79 -2.39 -0.02 0.83 16 36 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.38 1.99 6.19 -74.05 -0.46 1.53 16 38 H 0.13 0.77 8.11 -2.39 -0.02 0.75 16 39 H 0.11 0.51 6.38 -2.39 -0.02 0.49 16 40 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.02 1.14 8.06 -2.39 -0.02 1.12 16 44 H 0.06 2.60 8.10 -2.38 -0.02 2.58 16 45 H 0.07 3.78 6.17 -2.39 -0.01 3.77 16 46 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 47 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 48 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 49 H 0.07 2.63 8.14 -2.38 -0.02 2.62 16 50 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 51 H 0.09 2.71 8.10 -2.39 -0.02 2.69 16 52 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -74.48 413.81 2.14 -72.34 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.45 Total: 14.83 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 7.16 Total: -7.96 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -5.78 Total: -115.53 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -1.71 Total: -9.43 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -74.48 2.14 -72.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355859377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.838 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds