Wall clock time and date at job start Wed Apr 1 2020 04:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47485 * 2 1 4 4 N 1.46504 * 109.47235 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00061 * 275.26864 * 4 3 2 6 6 O 1.21603 * 119.99972 * 184.68330 * 5 4 3 7 7 C 1.47432 * 119.99808 * 4.68345 * 5 4 3 8 8 C 1.38046 * 126.41434 * 308.02510 * 7 5 4 9 9 N 1.34260 * 107.41349 * 179.97438 * 8 7 5 10 10 H 0.97004 * 125.74606 * 179.97438 * 9 8 7 11 11 N 1.39930 * 108.49690 * 0.02562 * 9 8 7 12 12 C 1.30455 * 108.89458 * 359.72821 * 11 9 8 13 13 C 1.50700 * 125.98684 * 180.26090 * 12 11 9 14 14 C 1.52997 * 117.50150 * 8.80155 * 13 12 11 15 15 C 1.52996 * 117.50168 * 300.17551 * 13 12 11 16 16 C 1.46501 * 119.99798 * 95.26358 * 4 3 2 17 17 C 1.53075 * 109.45166 * 119.79297 * 16 4 3 18 18 C 1.53193 * 109.29682 * 181.24287 * 17 16 4 19 19 N 1.46924 * 108.89251 * 305.57619 * 18 17 16 20 20 C 1.36937 * 120.63102 * 233.51727 * 19 18 17 21 21 H 1.08005 * 119.99686 * 142.86119 * 20 19 18 22 22 C 1.38805 * 119.99802 * 322.85798 * 20 19 18 23 23 N 1.31615 * 120.00520 * 359.70035 * 22 20 19 24 24 Si 1.86805 * 120.00007 * 179.69498 * 22 20 19 25 25 H 1.48497 * 109.46860 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47041 * 120.00284 * 24 22 20 27 27 H 1.48501 * 109.47404 * 240.00434 * 24 22 20 28 28 C 1.46928 * 118.73782 * 53.53548 * 19 18 17 29 29 C 1.53041 * 109.45910 * 239.99992 * 16 4 3 30 30 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46887 * 300.00712 * 1 2 3 32 32 H 1.09004 * 109.46805 * 59.99591 * 1 2 3 33 33 H 1.09004 * 109.46780 * 240.00027 * 2 1 3 34 34 H 1.09000 * 109.47143 * 120.00058 * 2 1 3 35 35 H 1.08991 * 109.47140 * 60.00027 * 3 2 1 36 36 H 1.08998 * 109.46864 * 299.99619 * 3 2 1 37 37 H 1.08000 * 126.29225 * 359.96580 * 8 7 5 38 38 H 1.09001 * 115.54605 * 154.50510 * 13 12 11 39 39 H 1.09005 * 117.49598 * 359.97438 * 14 13 12 40 40 H 1.08994 * 117.50004 * 145.01483 * 14 13 12 41 41 H 1.09002 * 117.50030 * 214.98064 * 15 13 12 42 42 H 1.09005 * 117.50008 * 359.97438 * 15 13 12 43 43 H 1.08994 * 109.46354 * 359.97332 * 16 4 3 44 44 H 1.08998 * 109.39328 * 61.36177 * 17 16 4 45 45 H 1.09008 * 109.62004 * 301.25623 * 17 16 4 46 46 H 1.08998 * 109.58549 * 185.71492 * 18 17 16 47 47 H 1.08998 * 109.58324 * 65.43210 * 18 17 16 48 48 H 0.96993 * 120.00945 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.58663 * 66.18240 * 28 19 18 50 50 H 1.09003 * 109.58841 * 186.46269 * 28 19 18 51 51 H 1.09001 * 109.50118 * 58.66801 * 29 16 4 52 52 H 1.08997 * 109.49852 * 298.56879 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1795 1.3350 1.1613 6 8 5.3925 1.4204 1.1704 7 6 3.4465 1.1140 2.4213 8 6 2.3855 1.8601 2.8938 9 7 2.0112 1.3275 4.0680 10 1 1.2881 1.6468 4.6303 11 7 2.8407 0.2350 4.3445 12 6 3.6950 0.0955 3.3685 13 6 4.7620 -0.9641 3.2703 14 6 4.7332 -2.0935 4.3021 15 6 5.8135 -1.0129 4.3806 16 6 4.2370 1.5589 -1.2643 17 6 5.1131 2.8138 -1.2322 18 6 5.8530 2.9490 -2.5667 19 7 6.5869 1.7042 -2.8321 20 6 7.9283 1.7299 -3.1059 21 1 8.5711 0.9470 -2.7312 22 6 8.4619 2.7622 -3.8652 23 7 7.6777 3.7131 -4.3268 24 14 10.2933 2.8020 -4.2316 25 1 10.9493 1.6271 -3.6036 26 1 10.5051 2.7600 -5.7008 27 1 10.8811 4.0501 -3.6822 28 6 5.8540 0.4312 -2.7984 29 6 5.1167 0.3219 -1.4600 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6768 1.9562 0.8899 36 1 1.6768 1.9562 -0.8900 37 1 1.9388 2.7151 2.4082 38 1 5.0852 -1.2134 2.2597 39 1 3.9427 -2.0698 5.0522 40 1 5.0374 -3.0861 3.9703 41 1 6.8285 -1.2947 4.1005 42 1 5.7339 -0.2782 5.1819 43 1 3.5283 1.6346 -2.0889 44 1 5.8370 2.7291 -0.4217 45 1 4.4881 3.6925 -1.0720 46 1 6.5538 3.7821 -2.5132 47 1 5.1342 3.1270 -3.3666 48 1 8.0505 4.4342 -4.8576 49 1 5.1336 0.4025 -3.6158 50 1 6.5553 -0.3971 -2.9002 51 1 4.4927 -0.5719 -1.4603 52 1 5.8422 0.2594 -0.6490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479994960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:43 Heat of formation + Delta-G solvation = 87.547693 kcal Electronic energy + Delta-G solvation = -32205.917585 eV Core-core repulsion = 28208.585820 eV Total energy + Delta-G solvation = -3997.331765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65595 -39.61061 -37.17392 -36.78560 -35.89355 -33.34418 -32.02734 -31.54862 -30.69863 -29.77965 -29.14940 -26.22034 -25.08248 -24.23143 -23.20865 -22.43061 -22.07030 -21.75241 -21.46810 -19.96183 -19.32294 -18.96706 -17.62867 -16.84088 -16.14810 -15.87097 -15.68334 -15.06765 -14.80995 -14.72347 -14.54203 -14.41112 -13.82456 -13.61666 -13.52095 -13.36227 -13.07107 -12.88131 -12.53122 -12.41076 -12.19682 -11.98873 -11.82554 -11.61314 -11.45472 -11.31843 -11.28896 -11.13916 -10.97509 -10.84340 -10.74687 -10.69145 -10.42119 -10.20628 -10.01018 -9.95418 -9.64280 -9.48552 -9.39831 -9.13571 -8.79822 -8.39735 -8.13552 -6.40509 -5.69364 -3.21944 1.47132 2.11950 2.49388 3.10149 3.39339 3.43996 3.50587 3.53586 3.89492 4.22363 4.45760 4.57339 4.69442 4.78089 4.83765 4.89360 4.96497 5.04391 5.19006 5.30480 5.34646 5.47812 5.49550 5.53409 5.56408 5.58261 5.59005 5.73734 5.78004 5.81014 5.85371 5.95195 5.98074 6.05958 6.07008 6.15305 6.24151 6.27978 6.45795 6.50863 6.66371 6.73639 6.87850 6.91012 6.95285 7.16107 7.22747 7.38348 7.55153 7.76968 7.88494 7.91166 8.59168 8.64367 9.35477 9.94293 10.55687 11.38526 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.003240 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.996590 B = 8638.629959 C = 9758.766512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.108 3.892 4 N -0.607 5.607 5 C 0.588 3.412 6 O -0.512 6.512 7 C -0.261 4.261 8 C 0.089 3.911 9 N -0.464 5.464 10 H 0.442 0.558 11 N -0.297 5.297 12 C 0.157 3.843 13 C -0.082 4.082 14 C -0.167 4.167 15 C -0.154 4.154 16 C 0.163 3.837 17 C -0.156 4.156 18 C 0.177 3.823 19 N -0.590 5.590 20 C -0.248 4.248 21 H 0.062 0.938 22 C 0.009 3.991 23 N -0.906 5.906 24 Si 0.902 3.098 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.151 3.849 29 C -0.145 4.145 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.185 0.815 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.089 0.911 47 H 0.013 0.987 48 H 0.252 0.748 49 H 0.014 0.986 50 H 0.054 0.946 51 H 0.044 0.956 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.567 -6.329 15.442 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C -0.016 4.016 4 N -0.339 5.339 5 C 0.375 3.625 6 O -0.386 6.386 7 C -0.276 4.276 8 C -0.062 4.062 9 N -0.170 5.170 10 H 0.286 0.714 11 N -0.120 5.120 12 C -0.009 4.009 13 C -0.103 4.103 14 C -0.205 4.205 15 C -0.192 4.192 16 C 0.061 3.939 17 C -0.196 4.196 18 C 0.051 3.949 19 N -0.313 5.313 20 C -0.379 4.379 21 H 0.079 0.921 22 C -0.190 4.190 23 N -0.550 5.550 24 Si 0.732 3.268 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.024 3.976 29 C -0.185 4.185 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.202 0.798 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.031 0.969 48 H 0.063 0.937 49 H 0.032 0.968 50 H 0.073 0.927 51 H 0.063 0.937 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.239 -6.579 16.428 24.705 hybrid contribution 0.446 0.793 -0.801 1.213 sum -16.792 -5.786 15.626 23.657 Atomic orbital electron populations 1.21682 0.95554 1.01728 1.01512 1.21954 0.95607 0.97556 1.02914 1.21730 0.80515 0.96801 1.02548 1.48213 1.05853 1.72998 1.06881 1.17265 0.86628 0.76596 0.82052 1.90812 1.13300 1.48330 1.86182 1.20314 1.03407 1.03014 1.00850 1.23047 0.95662 0.99144 0.88311 1.45987 1.28976 1.24259 1.17730 0.71407 1.77028 1.06835 1.05138 1.22963 1.21310 0.94443 0.94819 0.90359 1.20306 0.96666 0.95995 0.97290 1.23008 1.02014 0.93996 1.01457 1.22955 0.95042 1.01594 0.99656 1.21112 0.93056 0.97097 0.82622 1.22703 0.99150 0.94232 1.03561 1.20755 0.94037 0.90837 0.89255 1.43932 1.05647 1.00275 1.81427 1.19183 0.83495 1.09746 1.25426 0.92077 1.25321 0.97918 0.98674 0.97075 1.69930 1.33717 1.13130 1.38243 0.86220 0.85363 0.77553 0.77699 1.20183 1.21633 1.21677 1.20856 0.94102 0.90292 0.92337 1.22423 0.99125 0.95202 1.01744 0.92694 0.93114 0.92547 0.91382 0.91779 0.91183 0.90320 0.79807 0.85676 0.88146 0.88288 0.87889 0.88712 0.90762 0.90030 0.93996 0.89273 0.96864 0.93744 0.96799 0.92748 0.93716 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.14 -1.38 6.16 -26.73 -0.16 -1.55 16 3 C 0.11 1.11 5.12 -4.04 -0.02 1.09 16 4 N -0.61 -8.77 2.43 -167.30 -0.41 -9.18 16 5 C 0.59 9.46 6.72 -12.52 -0.08 9.38 16 6 O -0.51 -10.46 13.37 5.28 0.07 -10.39 16 7 C -0.26 -3.42 4.57 -105.06 -0.48 -3.90 16 8 C 0.09 0.82 10.15 -16.56 -0.17 0.65 16 9 N -0.46 -3.90 7.29 30.85 0.22 -3.67 16 10 H 0.44 2.02 8.96 -182.72 -1.64 0.38 16 11 N -0.30 -3.50 12.22 33.90 0.41 -3.09 16 12 C 0.16 2.07 6.80 -82.02 -0.56 1.51 16 13 C -0.08 -1.04 6.07 -91.78 -0.56 -1.60 16 14 C -0.17 -1.70 10.14 -26.73 -0.27 -1.97 16 15 C -0.15 -1.74 10.23 -26.73 -0.27 -2.01 16 16 C 0.16 2.85 2.50 -67.87 -0.17 2.68 16 17 C -0.16 -3.24 5.28 -26.59 -0.14 -3.38 16 18 C 0.18 4.40 5.21 -3.71 -0.02 4.38 16 19 N -0.59 -15.40 2.98 -172.32 -0.51 -15.92 16 20 C -0.25 -7.09 9.53 -15.06 -0.14 -7.24 16 21 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 22 C 0.01 0.25 5.23 -17.43 -0.09 0.15 16 23 N -0.91 -26.73 10.95 55.49 0.61 -26.12 16 24 Si 0.90 22.32 29.55 -169.99 -5.02 17.29 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.15 3.31 6.52 -3.71 -0.02 3.29 16 29 C -0.14 -2.75 5.27 -26.61 -0.14 -2.89 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.71 7.44 -51.93 -0.39 0.33 16 35 H 0.07 0.58 4.40 -51.93 -0.23 0.35 16 36 H 0.08 0.76 7.81 -51.93 -0.41 0.35 16 37 H 0.19 1.09 6.79 -52.49 -0.36 0.74 16 38 H 0.13 1.72 8.14 -51.93 -0.42 1.29 16 39 H 0.10 1.02 7.90 -51.93 -0.41 0.61 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.23 7.72 -51.93 -0.40 0.83 16 44 H 0.08 1.92 6.06 -51.93 -0.31 1.61 16 45 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 46 H 0.09 2.50 6.23 -51.93 -0.32 2.18 16 47 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 51 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.08 1.70 6.37 -51.93 -0.33 1.37 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -34.30 406.97 -11.26 -45.55 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -9.83 Total: 1.53 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.94 Total: -2.14 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.33 Total: -57.97 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.30 -11.26 -45.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479994960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.100 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds