Wall clock time and date at job start Wed Apr 1 2020 04:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47485 * 2 1 4 4 N 1.46504 * 109.47235 * 180.02562 * 3 2 1 5 5 C 1.34770 * 120.00061 * 275.26864 * 4 3 2 6 6 O 1.21603 * 119.99972 * 184.68330 * 5 4 3 7 7 C 1.47432 * 119.99808 * 4.68345 * 5 4 3 8 8 C 1.38046 * 126.41434 * 308.02510 * 7 5 4 9 9 N 1.34260 * 107.41349 * 179.97438 * 8 7 5 10 10 H 0.97004 * 125.74606 * 179.97438 * 9 8 7 11 11 N 1.39930 * 108.49690 * 0.02562 * 9 8 7 12 12 C 1.30455 * 108.89458 * 359.72821 * 11 9 8 13 13 C 1.50700 * 125.98684 * 180.26090 * 12 11 9 14 14 C 1.52997 * 117.50150 * 8.80155 * 13 12 11 15 15 C 1.52996 * 117.50168 * 300.17551 * 13 12 11 16 16 C 1.46501 * 119.99798 * 95.26358 * 4 3 2 17 17 C 1.53075 * 109.45166 * 119.79297 * 16 4 3 18 18 C 1.53193 * 109.29682 * 181.24287 * 17 16 4 19 19 N 1.46924 * 108.89251 * 305.57619 * 18 17 16 20 20 C 1.36937 * 120.63102 * 233.51727 * 19 18 17 21 21 H 1.08005 * 119.99686 * 142.86119 * 20 19 18 22 22 C 1.38805 * 119.99802 * 322.85798 * 20 19 18 23 23 N 1.31615 * 120.00520 * 359.70035 * 22 20 19 24 24 Si 1.86805 * 120.00007 * 179.69498 * 22 20 19 25 25 H 1.48497 * 109.46860 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47041 * 120.00284 * 24 22 20 27 27 H 1.48501 * 109.47404 * 240.00434 * 24 22 20 28 28 C 1.46928 * 118.73782 * 53.53548 * 19 18 17 29 29 C 1.53041 * 109.45910 * 239.99992 * 16 4 3 30 30 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46887 * 300.00712 * 1 2 3 32 32 H 1.09004 * 109.46805 * 59.99591 * 1 2 3 33 33 H 1.09004 * 109.46780 * 240.00027 * 2 1 3 34 34 H 1.09000 * 109.47143 * 120.00058 * 2 1 3 35 35 H 1.08991 * 109.47140 * 60.00027 * 3 2 1 36 36 H 1.08998 * 109.46864 * 299.99619 * 3 2 1 37 37 H 1.08000 * 126.29225 * 359.96580 * 8 7 5 38 38 H 1.09001 * 115.54605 * 154.50510 * 13 12 11 39 39 H 1.09005 * 117.49598 * 359.97438 * 14 13 12 40 40 H 1.08994 * 117.50004 * 145.01483 * 14 13 12 41 41 H 1.09002 * 117.50030 * 214.98064 * 15 13 12 42 42 H 1.09005 * 117.50008 * 359.97438 * 15 13 12 43 43 H 1.08994 * 109.46354 * 359.97332 * 16 4 3 44 44 H 1.08998 * 109.39328 * 61.36177 * 17 16 4 45 45 H 1.09008 * 109.62004 * 301.25623 * 17 16 4 46 46 H 1.08998 * 109.58549 * 185.71492 * 18 17 16 47 47 H 1.08998 * 109.58324 * 65.43210 * 18 17 16 48 48 H 0.96993 * 120.00945 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.58663 * 66.18240 * 28 19 18 50 50 H 1.09003 * 109.58841 * 186.46269 * 28 19 18 51 51 H 1.09001 * 109.50118 * 58.66801 * 29 16 4 52 52 H 1.08997 * 109.49852 * 298.56879 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1795 1.3350 1.1613 6 8 5.3925 1.4204 1.1704 7 6 3.4465 1.1140 2.4213 8 6 2.3855 1.8601 2.8938 9 7 2.0112 1.3275 4.0680 10 1 1.2881 1.6468 4.6303 11 7 2.8407 0.2350 4.3445 12 6 3.6950 0.0955 3.3685 13 6 4.7620 -0.9641 3.2703 14 6 4.7332 -2.0935 4.3021 15 6 5.8135 -1.0129 4.3806 16 6 4.2370 1.5589 -1.2643 17 6 5.1131 2.8138 -1.2322 18 6 5.8530 2.9490 -2.5667 19 7 6.5869 1.7042 -2.8321 20 6 7.9283 1.7299 -3.1059 21 1 8.5711 0.9470 -2.7312 22 6 8.4619 2.7622 -3.8652 23 7 7.6777 3.7131 -4.3268 24 14 10.2933 2.8020 -4.2316 25 1 10.9493 1.6271 -3.6036 26 1 10.5051 2.7600 -5.7008 27 1 10.8811 4.0501 -3.6822 28 6 5.8540 0.4312 -2.7984 29 6 5.1167 0.3219 -1.4600 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6768 1.9562 0.8899 36 1 1.6768 1.9562 -0.8900 37 1 1.9388 2.7151 2.4082 38 1 5.0852 -1.2134 2.2597 39 1 3.9427 -2.0698 5.0522 40 1 5.0374 -3.0861 3.9703 41 1 6.8285 -1.2947 4.1005 42 1 5.7339 -0.2782 5.1819 43 1 3.5283 1.6346 -2.0889 44 1 5.8370 2.7291 -0.4217 45 1 4.4881 3.6925 -1.0720 46 1 6.5538 3.7821 -2.5132 47 1 5.1342 3.1270 -3.3666 48 1 8.0505 4.4342 -4.8576 49 1 5.1336 0.4025 -3.6158 50 1 6.5553 -0.3971 -2.9002 51 1 4.4927 -0.5719 -1.4603 52 1 5.8422 0.2594 -0.6490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479994960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:42 Heat of formation + Delta-G solvation = 66.873311 kcal Electronic energy + Delta-G solvation = -32206.814094 eV Core-core repulsion = 28208.585820 eV Total energy + Delta-G solvation = -3998.228274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.54180 -40.86997 -38.48800 -38.03995 -37.04910 -34.92598 -33.40244 -32.45890 -32.00974 -31.49899 -30.61514 -27.31190 -26.72046 -25.11472 -24.59551 -23.78055 -23.32750 -23.03273 -22.34101 -21.33270 -20.44034 -20.14456 -18.88412 -18.47308 -17.25520 -17.22755 -16.71099 -16.60098 -16.06261 -15.63881 -15.60488 -15.44122 -15.34432 -15.22392 -14.91815 -14.68646 -14.46969 -14.12820 -14.03117 -13.84907 -13.28529 -13.02721 -12.92133 -12.87326 -12.74777 -12.64481 -12.53657 -12.44718 -12.28741 -12.18612 -12.08525 -11.95052 -11.93319 -11.76405 -11.57418 -11.35826 -11.29329 -11.18989 -10.60546 -10.45216 -10.24469 -9.75697 -9.39174 -8.50499 -7.86051 -5.42586 0.67407 1.13889 1.45091 1.45812 1.57184 1.76360 1.99029 2.28844 2.50385 3.00057 3.29867 3.37397 3.59307 3.74067 3.81871 3.96072 4.00481 4.07259 4.10790 4.11465 4.23262 4.29577 4.40603 4.46311 4.52435 4.58935 4.60915 4.65239 4.73611 4.73984 4.78115 4.89008 4.91714 4.92119 5.00195 5.03619 5.11266 5.13578 5.21831 5.23414 5.25851 5.29641 5.33062 5.47498 5.49243 5.59096 5.67055 5.76064 5.88903 6.30060 6.47469 6.53858 6.65731 7.20055 7.40249 7.87346 8.42306 9.19121 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.003240 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.996590 B = 8638.629959 C = 9758.766512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.102 3.898 4 N -0.601 5.601 5 C 0.589 3.411 6 O -0.567 6.567 7 C -0.297 4.297 8 C 0.119 3.881 9 N -0.442 5.442 10 H 0.461 0.539 11 N -0.311 5.311 12 C 0.145 3.855 13 C -0.105 4.105 14 C -0.143 4.143 15 C -0.159 4.159 16 C 0.172 3.828 17 C -0.140 4.140 18 C 0.187 3.813 19 N -0.610 5.610 20 C -0.267 4.267 21 H 0.053 0.947 22 C -0.040 4.040 23 N -0.931 5.931 24 Si 0.967 3.033 25 H -0.270 1.270 26 H -0.284 1.284 27 H -0.289 1.289 28 C 0.149 3.851 29 C -0.130 4.130 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.225 0.775 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.005 0.995 48 H 0.251 0.749 49 H 0.025 0.975 50 H 0.048 0.952 51 H 0.070 0.930 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.472 -6.442 16.583 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C -0.019 4.019 4 N -0.332 5.332 5 C 0.377 3.623 6 O -0.446 6.446 7 C -0.312 4.312 8 C -0.034 4.034 9 N -0.149 5.149 10 H 0.310 0.690 11 N -0.134 5.134 12 C -0.021 4.021 13 C -0.125 4.125 14 C -0.180 4.180 15 C -0.197 4.197 16 C 0.069 3.931 17 C -0.180 4.180 18 C 0.060 3.940 19 N -0.334 5.334 20 C -0.398 4.398 21 H 0.071 0.929 22 C -0.236 4.236 23 N -0.576 5.576 24 Si 0.795 3.205 25 H -0.195 1.195 26 H -0.211 1.211 27 H -0.216 1.216 28 C 0.023 3.977 29 C -0.170 4.170 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.241 0.759 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.023 0.977 48 H 0.060 0.940 49 H 0.043 0.957 50 H 0.067 0.933 51 H 0.089 0.911 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.223 -6.720 17.608 27.643 hybrid contribution 1.285 0.829 -1.108 1.888 sum -18.938 -5.891 16.501 25.799 Atomic orbital electron populations 1.21641 0.93421 1.02158 1.02687 1.21860 0.97302 0.96700 1.01515 1.22064 0.77493 0.97742 1.04632 1.48128 1.07585 1.72282 1.05231 1.17699 0.86091 0.75257 0.83225 1.90791 1.15912 1.50811 1.87079 1.20129 1.05637 1.05098 1.00315 1.23478 0.93617 0.98553 0.87707 1.46007 1.28473 1.22880 1.17542 0.69004 1.76975 1.07230 1.06515 1.22703 1.21342 0.94836 0.95128 0.90816 1.20273 0.97740 0.97786 0.96742 1.23040 1.01054 0.93982 0.99961 1.22977 0.95341 1.02308 0.99095 1.20800 0.92993 0.94440 0.84869 1.22415 0.98935 0.96960 0.99712 1.20506 0.93041 0.89339 0.91067 1.44174 1.05406 1.01895 1.81932 1.19412 0.84983 1.09774 1.25602 0.92908 1.26026 1.02165 0.98340 0.97099 1.70087 1.35335 1.13468 1.38722 0.85218 0.80350 0.77493 0.77486 1.19496 1.21075 1.21616 1.20968 0.94111 0.88337 0.94262 1.22195 0.98797 0.97286 0.98682 0.92722 0.91595 0.91687 0.92803 0.93284 0.88492 0.88775 0.75868 0.87838 0.87738 0.86716 0.87712 0.89062 0.88832 0.93138 0.92045 0.93229 0.97712 0.93957 0.95712 0.93329 0.91103 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.13 -2.27 6.16 30.59 0.19 -2.09 16 3 C 0.10 1.77 5.12 86.38 0.44 2.21 16 4 N -0.60 -16.54 2.43 -801.49 -1.95 -18.49 16 5 C 0.59 18.85 6.72 86.67 0.58 19.43 16 6 O -0.57 -24.27 13.37 -4.04 -0.05 -24.32 16 7 C -0.30 -7.38 4.57 -20.15 -0.09 -7.47 16 8 C 0.12 1.76 10.15 84.28 0.86 2.62 16 9 N -0.44 -5.86 7.29 -56.31 -0.41 -6.27 16 10 H 0.46 2.24 8.96 -213.43 -1.91 0.33 16 11 N -0.31 -6.73 12.22 -46.67 -0.57 -7.30 16 12 C 0.14 3.72 6.80 43.51 0.30 4.01 16 13 C -0.11 -2.73 6.07 -11.54 -0.07 -2.80 16 14 C -0.14 -2.83 10.14 30.59 0.31 -2.52 16 15 C -0.16 -3.67 10.23 30.59 0.31 -3.35 16 16 C 0.17 5.91 2.50 45.03 0.11 6.02 16 17 C -0.14 -5.90 5.28 30.68 0.16 -5.74 16 18 C 0.19 9.56 5.21 86.36 0.45 10.01 16 19 N -0.61 -32.96 2.98 -699.10 -2.08 -35.04 16 20 C -0.27 -15.80 9.53 84.03 0.80 -15.00 16 21 H 0.05 3.14 7.83 -2.91 -0.02 3.11 16 22 C -0.04 -2.36 5.23 84.86 0.44 -1.92 16 23 N -0.93 -56.47 10.95 21.65 0.24 -56.24 16 24 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 25 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 28 C 0.15 6.66 6.52 86.36 0.56 7.22 16 29 C -0.13 -4.97 5.27 30.67 0.16 -4.81 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.05 0.99 7.44 -2.39 -0.02 0.98 16 35 H 0.10 1.14 4.40 -2.39 -0.01 1.13 16 36 H 0.09 1.41 7.81 -2.39 -0.02 1.39 16 37 H 0.23 1.41 6.79 -2.91 -0.02 1.39 16 38 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.10 1.99 7.90 -2.38 -0.02 1.97 16 40 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.09 2.90 7.72 -2.39 -0.02 2.88 16 44 H 0.05 2.48 6.06 -2.39 -0.01 2.46 16 45 H 0.06 2.29 8.14 -2.38 -0.02 2.28 16 46 H 0.05 2.91 6.23 -2.39 -0.01 2.90 16 47 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 49 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 51 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 52 H 0.05 2.20 6.37 -2.39 -0.02 2.19 16 Total: -1.00 -79.51 406.97 2.44 -77.06 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.99 Total: 16.67 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.23 Total: 4.94 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -4.78 Total: -123.34 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.05 Total: -24.32 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -79.51 2.44 -77.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479994960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.937 kcal (2) G-P(sol) polarization free energy of solvation -79.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds