Wall clock time and date at job start Wed Apr 1 2020 04:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47708 * 2 1 4 4 N 1.46497 * 109.47615 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00045 * 275.31515 * 4 3 2 6 6 H 1.07998 * 119.99662 * 37.57494 * 5 4 3 7 7 C 1.38813 * 119.99469 * 217.57525 * 5 4 3 8 8 N 1.31611 * 120.00593 * 21.42817 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 201.42171 * 7 5 4 10 10 H 1.48500 * 109.47105 * 90.00182 * 9 7 5 11 11 H 1.48496 * 109.47271 * 210.00204 * 9 7 5 12 12 H 1.48505 * 109.47251 * 330.00233 * 9 7 5 13 13 C 1.46504 * 119.99996 * 95.30829 * 4 3 2 14 14 C 1.52999 * 109.47185 * 270.00192 * 13 4 3 15 15 N 1.46495 * 109.46886 * 179.97438 * 14 13 4 16 16 C 1.34775 * 119.99882 * 180.27680 * 15 14 13 17 17 O 1.21599 * 120.00253 * 359.72781 * 16 15 14 18 18 C 1.47541 * 120.00136 * 179.72743 * 16 15 14 19 19 C 1.40351 * 120.47450 * 179.97438 * 18 16 15 20 20 C 1.36859 * 118.49317 * 179.97438 * 19 18 16 21 21 C 1.39400 * 119.37606 * 0.02562 * 20 19 18 22 22 N 1.38461 * 119.53694 * 179.97438 * 21 20 19 23 23 C 1.48537 * 111.00119 * 62.60173 * 22 21 20 24 24 C 1.54932 * 103.22646 * 159.72179 * 23 22 21 25 25 C 1.54596 * 102.92282 * 322.58332 * 24 23 22 26 26 C 1.47896 * 110.99909 * 179.97438 * 22 21 20 27 27 N 1.32605 * 120.92517 * 359.97438 * 21 20 19 28 28 C 1.31679 * 121.62963 * 359.70781 * 27 21 20 29 29 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46872 * 299.99829 * 1 2 3 31 31 H 1.09000 * 109.46608 * 59.99653 * 1 2 3 32 32 H 1.09003 * 109.47348 * 239.99957 * 2 1 3 33 33 H 1.09007 * 109.46991 * 120.00391 * 2 1 3 34 34 H 1.09001 * 109.46814 * 60.00136 * 3 2 1 35 35 H 1.08997 * 109.47093 * 300.00779 * 3 2 1 36 36 H 0.96991 * 120.00571 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46603 * 150.00299 * 13 4 3 38 38 H 1.08996 * 109.46451 * 30.00252 * 13 4 3 39 39 H 1.09005 * 109.47075 * 59.99790 * 14 13 4 40 40 H 1.08995 * 109.47233 * 300.00362 * 14 13 4 41 41 H 0.96995 * 120.00034 * 0.02562 * 15 14 13 42 42 H 1.07995 * 120.76032 * 359.97438 * 19 18 16 43 43 H 1.07996 * 120.31548 * 179.97438 * 20 19 18 44 44 H 1.09003 * 110.65947 * 278.15746 * 23 22 21 45 45 H 1.08995 * 110.66681 * 41.28659 * 23 22 21 46 46 H 1.09003 * 110.72684 * 204.22796 * 24 23 22 47 47 H 1.09004 * 110.87848 * 81.01385 * 24 23 22 48 48 H 1.08999 * 110.31163 * 263.04633 * 25 24 23 49 49 H 1.09004 * 110.31064 * 140.87044 * 25 24 23 50 50 H 1.09006 * 109.91708 * 333.50919 * 26 22 21 51 51 H 1.09000 * 109.91825 * 94.80001 * 26 22 21 52 52 H 1.08010 * 119.73709 * 180.28970 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3327 1.1818 6 1 3.8170 0.6873 1.9635 7 6 5.3614 2.0511 1.3741 8 7 5.6022 3.1237 0.6504 9 14 6.5969 1.4956 2.6603 10 1 7.5670 0.5567 2.0419 11 1 7.3221 2.6770 3.1929 12 1 5.8837 0.8115 3.7688 13 6 4.2381 1.5596 -1.2624 14 6 4.4933 0.1641 -1.8354 15 7 5.2258 0.2813 -3.0986 16 6 5.5580 -0.8267 -3.7903 17 8 5.2541 -1.9239 -3.3633 18 6 6.2904 -0.7083 -5.0656 19 6 6.6419 -1.8556 -5.7937 20 6 7.3205 -1.6987 -6.9718 21 6 7.6409 -0.4150 -7.4107 22 7 8.3278 -0.2525 -8.6019 23 6 7.5340 -0.7642 -9.7483 24 6 8.1700 -0.0495 -10.9670 25 6 8.4947 1.3566 -10.4125 26 6 8.5669 1.1794 -8.8847 27 7 7.2970 0.6527 -6.7035 28 6 6.6383 0.5462 -5.5682 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 6.4213 3.6255 0.7845 37 1 5.1905 2.0591 -1.0847 38 1 3.6493 2.1414 -1.9715 39 1 3.5409 -0.3355 -2.0130 40 1 5.0820 -0.4178 -1.1262 41 1 5.4685 1.1565 -3.4391 42 1 6.3827 -2.8398 -5.4326 43 1 7.6058 -2.5613 -7.5556 44 1 7.6404 -1.8453 -9.8376 45 1 6.4851 -0.4870 -9.6441 46 1 7.4588 0.0154 -11.7905 47 1 9.0801 -0.5586 -11.2844 48 1 7.7033 2.0587 -10.6746 49 1 9.4529 1.7037 -10.7990 50 1 7.7995 1.7861 -8.4038 51 1 9.5536 1.4695 -8.5238 52 1 6.3695 1.4367 -5.0192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481149506.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:50 Heat of formation + Delta-G solvation = 28.027623 kcal Electronic energy + Delta-G solvation = -29944.950688 eV Core-core repulsion = 25945.037939 eV Total energy + Delta-G solvation = -3999.912749 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.14974 -39.47430 -38.11780 -36.48687 -34.37256 -33.23281 -32.90357 -32.67906 -30.89932 -29.79457 -29.33076 -27.82490 -25.57603 -24.49770 -23.92936 -23.23016 -21.81440 -21.10480 -20.84379 -20.47477 -20.04887 -18.20948 -17.49636 -16.92605 -16.57056 -16.10962 -15.26265 -15.12617 -15.04351 -14.94325 -14.60777 -14.28821 -14.23524 -14.02404 -13.83058 -13.31032 -13.28855 -13.02618 -12.95317 -12.77941 -12.57985 -12.53311 -12.40120 -11.77096 -11.59294 -11.58547 -11.52310 -11.19955 -10.98187 -10.94540 -10.76371 -10.46072 -10.37704 -10.29551 -10.11865 -10.09111 -9.94658 -9.89606 -9.69010 -9.44284 -8.66676 -8.51159 -8.36650 -6.64375 -5.85258 -3.44291 0.52157 1.08257 2.87530 3.29611 3.34509 3.42814 3.44064 3.48135 3.78702 3.99216 4.19589 4.40472 4.44988 4.53441 4.71284 4.75264 4.88377 4.89624 4.97433 5.05449 5.25496 5.26329 5.38410 5.40466 5.41675 5.46411 5.56109 5.63513 5.65978 5.69240 5.75390 5.83524 5.92675 6.02582 6.09939 6.16328 6.21075 6.23703 6.27322 6.40933 6.52019 6.61316 6.64969 6.79582 6.82125 6.96612 6.99134 7.17185 7.50995 7.63703 7.79056 7.84685 8.45386 8.49369 9.12692 9.74524 10.32246 11.14760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.002206 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.926563 B =12688.815831 C =13629.411500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.137 3.863 14 C 0.097 3.903 15 N -0.713 5.713 16 C 0.557 3.443 17 O -0.544 6.544 18 C -0.205 4.205 19 C 0.000 4.000 20 C -0.187 4.187 21 C 0.319 3.681 22 N -0.463 5.463 23 C 0.043 3.957 24 C -0.124 4.124 25 C -0.134 4.134 26 C 0.033 3.967 27 N -0.521 5.521 28 C 0.161 3.839 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.255 0.745 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.396 0.604 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -4.684 -22.468 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.009 3.991 14 C -0.028 4.028 15 N -0.364 5.364 16 C 0.343 3.657 17 O -0.423 6.423 18 C -0.211 4.211 19 C -0.026 4.026 20 C -0.210 4.210 21 C 0.087 3.913 22 N -0.181 5.181 23 C -0.082 4.082 24 C -0.162 4.162 25 C -0.172 4.172 26 C -0.094 4.094 27 N -0.235 5.235 28 C 0.002 3.998 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.230 0.770 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.121 -4.744 -22.392 23.101 hybrid contribution 0.112 -0.355 0.856 0.933 sum 3.233 -5.099 -21.536 22.366 Atomic orbital electron populations 1.21720 0.97342 1.00400 1.00990 1.22191 0.93811 1.00949 1.01593 1.20937 0.85028 0.92968 0.98930 1.43600 0.99433 1.84798 1.02047 1.19031 1.05665 1.20412 0.93932 0.92016 1.25183 1.00820 0.94521 0.98141 1.69982 1.25620 1.14745 1.42545 0.86392 0.81648 0.77891 0.81482 1.21204 1.21702 1.20153 1.21071 1.00396 0.91129 0.86509 1.22520 0.94862 1.02949 0.82449 1.46064 1.57629 1.08176 1.24507 1.17940 0.79347 0.84891 0.83537 1.90767 1.55265 1.26390 1.69892 1.21021 1.06256 0.95246 0.98594 1.21329 0.90596 0.99308 0.91378 1.21256 1.03858 0.97057 0.98787 1.20108 0.88896 0.89694 0.92647 1.61765 1.38170 1.17861 1.00324 1.23339 0.95640 1.00892 0.88316 1.22517 1.01356 0.95640 0.96683 1.22460 1.02535 0.97300 0.94881 1.22926 1.03764 0.87179 0.95491 1.67606 1.14804 1.32260 1.08784 1.22848 0.90177 0.96433 0.90325 0.93812 0.93198 0.93486 0.92931 0.92337 0.93566 0.94750 0.93490 0.88339 0.95253 0.92784 0.91529 0.77000 0.83386 0.84149 0.89052 0.92474 0.90408 0.90318 0.91085 0.90668 0.89641 0.89907 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.15 -2.64 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 3.03 5.72 -4.05 -0.02 3.01 16 4 N -0.58 -13.79 2.43 -173.24 -0.42 -14.22 16 5 C -0.26 -6.91 9.45 -15.06 -0.14 -7.05 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 8 N -0.89 -24.48 11.47 55.49 0.64 -23.85 16 9 Si 0.90 21.36 29.60 -169.99 -5.03 16.33 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.14 2.97 5.45 -4.04 -0.02 2.95 16 14 C 0.10 1.94 6.00 -4.05 -0.02 1.92 16 15 N -0.71 -11.88 5.51 -61.35 -0.34 -12.22 16 16 C 0.56 9.49 7.77 -12.47 -0.10 9.39 16 17 O -0.54 -11.16 16.41 5.28 0.09 -11.07 16 18 C -0.20 -2.83 5.89 -104.82 -0.62 -3.45 16 19 C 0.00 0.00 9.65 -39.29 -0.38 -0.38 16 20 C -0.19 -2.00 9.38 -39.65 -0.37 -2.37 16 21 C 0.32 3.67 6.20 -155.27 -0.96 2.70 16 22 N -0.46 -4.51 5.28 -169.29 -0.89 -5.40 16 23 C 0.04 0.31 6.03 -1.90 -0.01 0.30 16 24 C -0.12 -0.69 7.06 -24.87 -0.18 -0.86 16 25 C -0.13 -0.84 6.93 -25.39 -0.18 -1.02 16 26 C 0.03 0.30 6.34 -2.77 -0.02 0.28 16 27 N -0.52 -6.51 8.10 -12.14 -0.10 -6.61 16 28 C 0.16 2.00 10.71 -17.13 -0.18 1.82 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.98 6.64 -51.93 -0.34 0.63 16 33 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 34 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.10 2.41 5.52 -51.93 -0.29 2.13 16 38 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 39 H 0.05 1.10 6.64 -51.93 -0.34 0.75 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.40 5.53 6.52 -40.82 -0.27 5.26 16 42 H 0.15 1.74 7.73 -52.49 -0.41 1.34 16 43 H 0.14 1.15 8.01 -52.49 -0.42 0.73 16 44 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 45 H 0.06 0.43 7.99 -51.93 -0.42 0.02 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.88 6.48 -51.93 -0.34 0.54 16 51 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.16 1.70 6.41 -52.48 -0.34 1.36 16 LS Contribution 415.28 15.07 6.26 6.26 Total: -1.00 -31.19 415.28 -11.48 -42.67 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.59 Total: 5.18 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -3.09 Total: 2.92 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -1.12 Total: -62.29 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.19 -11.48 -42.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481149506.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.700 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds