Wall clock time and date at job start Wed Apr 1 2020 04:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47708 * 2 1 4 4 N 1.46497 * 109.47615 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00045 * 275.31515 * 4 3 2 6 6 H 1.07998 * 119.99662 * 37.57494 * 5 4 3 7 7 C 1.38813 * 119.99469 * 217.57525 * 5 4 3 8 8 N 1.31611 * 120.00593 * 21.42817 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 201.42171 * 7 5 4 10 10 H 1.48500 * 109.47105 * 90.00182 * 9 7 5 11 11 H 1.48496 * 109.47271 * 210.00204 * 9 7 5 12 12 H 1.48505 * 109.47251 * 330.00233 * 9 7 5 13 13 C 1.46504 * 119.99996 * 95.30829 * 4 3 2 14 14 C 1.52999 * 109.47185 * 270.00192 * 13 4 3 15 15 N 1.46495 * 109.46886 * 179.97438 * 14 13 4 16 16 C 1.34775 * 119.99882 * 180.27680 * 15 14 13 17 17 O 1.21599 * 120.00253 * 359.72781 * 16 15 14 18 18 C 1.47541 * 120.00136 * 179.72743 * 16 15 14 19 19 C 1.40351 * 120.47450 * 179.97438 * 18 16 15 20 20 C 1.36859 * 118.49317 * 179.97438 * 19 18 16 21 21 C 1.39400 * 119.37606 * 0.02562 * 20 19 18 22 22 N 1.38461 * 119.53694 * 179.97438 * 21 20 19 23 23 C 1.48537 * 111.00119 * 62.60173 * 22 21 20 24 24 C 1.54932 * 103.22646 * 159.72179 * 23 22 21 25 25 C 1.54596 * 102.92282 * 322.58332 * 24 23 22 26 26 C 1.47896 * 110.99909 * 179.97438 * 22 21 20 27 27 N 1.32605 * 120.92517 * 359.97438 * 21 20 19 28 28 C 1.31679 * 121.62963 * 359.70781 * 27 21 20 29 29 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46872 * 299.99829 * 1 2 3 31 31 H 1.09000 * 109.46608 * 59.99653 * 1 2 3 32 32 H 1.09003 * 109.47348 * 239.99957 * 2 1 3 33 33 H 1.09007 * 109.46991 * 120.00391 * 2 1 3 34 34 H 1.09001 * 109.46814 * 60.00136 * 3 2 1 35 35 H 1.08997 * 109.47093 * 300.00779 * 3 2 1 36 36 H 0.96991 * 120.00571 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46603 * 150.00299 * 13 4 3 38 38 H 1.08996 * 109.46451 * 30.00252 * 13 4 3 39 39 H 1.09005 * 109.47075 * 59.99790 * 14 13 4 40 40 H 1.08995 * 109.47233 * 300.00362 * 14 13 4 41 41 H 0.96995 * 120.00034 * 0.02562 * 15 14 13 42 42 H 1.07995 * 120.76032 * 359.97438 * 19 18 16 43 43 H 1.07996 * 120.31548 * 179.97438 * 20 19 18 44 44 H 1.09003 * 110.65947 * 278.15746 * 23 22 21 45 45 H 1.08995 * 110.66681 * 41.28659 * 23 22 21 46 46 H 1.09003 * 110.72684 * 204.22796 * 24 23 22 47 47 H 1.09004 * 110.87848 * 81.01385 * 24 23 22 48 48 H 1.08999 * 110.31163 * 263.04633 * 25 24 23 49 49 H 1.09004 * 110.31064 * 140.87044 * 25 24 23 50 50 H 1.09006 * 109.91708 * 333.50919 * 26 22 21 51 51 H 1.09000 * 109.91825 * 94.80001 * 26 22 21 52 52 H 1.08010 * 119.73709 * 180.28970 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3327 1.1818 6 1 3.8170 0.6873 1.9635 7 6 5.3614 2.0511 1.3741 8 7 5.6022 3.1237 0.6504 9 14 6.5969 1.4956 2.6603 10 1 7.5670 0.5567 2.0419 11 1 7.3221 2.6770 3.1929 12 1 5.8837 0.8115 3.7688 13 6 4.2381 1.5596 -1.2624 14 6 4.4933 0.1641 -1.8354 15 7 5.2258 0.2813 -3.0986 16 6 5.5580 -0.8267 -3.7903 17 8 5.2541 -1.9239 -3.3633 18 6 6.2904 -0.7083 -5.0656 19 6 6.6419 -1.8556 -5.7937 20 6 7.3205 -1.6987 -6.9718 21 6 7.6409 -0.4150 -7.4107 22 7 8.3278 -0.2525 -8.6019 23 6 7.5340 -0.7642 -9.7483 24 6 8.1700 -0.0495 -10.9670 25 6 8.4947 1.3566 -10.4125 26 6 8.5669 1.1794 -8.8847 27 7 7.2970 0.6527 -6.7035 28 6 6.6383 0.5462 -5.5682 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 6.4213 3.6255 0.7845 37 1 5.1905 2.0591 -1.0847 38 1 3.6493 2.1414 -1.9715 39 1 3.5409 -0.3355 -2.0130 40 1 5.0820 -0.4178 -1.1262 41 1 5.4685 1.1565 -3.4391 42 1 6.3827 -2.8398 -5.4326 43 1 7.6058 -2.5613 -7.5556 44 1 7.6404 -1.8453 -9.8376 45 1 6.4851 -0.4870 -9.6441 46 1 7.4588 0.0154 -11.7905 47 1 9.0801 -0.5586 -11.2844 48 1 7.7033 2.0587 -10.6746 49 1 9.4529 1.7037 -10.7990 50 1 7.7995 1.7861 -8.4038 51 1 9.5536 1.4695 -8.5238 52 1 6.3695 1.4367 -5.0192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481149506.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:48 Heat of formation + Delta-G solvation = 9.945800 kcal Electronic energy + Delta-G solvation = -29945.734775 eV Core-core repulsion = 25945.037939 eV Total energy + Delta-G solvation = -4000.696836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.06836 -40.66754 -39.04539 -38.21981 -35.87375 -34.61653 -34.04644 -33.62265 -32.62935 -30.91843 -29.93490 -29.25275 -27.34186 -25.70549 -24.90270 -24.54121 -22.78077 -22.46958 -21.90668 -21.57248 -21.48693 -19.34166 -18.67903 -18.21382 -17.87099 -17.02131 -16.92067 -16.45744 -16.39899 -15.99557 -15.89984 -15.61710 -15.53866 -15.21877 -14.75031 -14.72183 -14.41771 -14.32119 -14.19621 -14.04548 -13.70504 -13.33799 -13.28961 -13.11905 -13.07509 -12.92699 -12.63627 -12.53009 -12.27183 -12.22932 -12.12587 -12.03461 -11.87295 -11.68712 -11.46994 -11.43397 -11.26348 -11.10588 -10.93737 -10.55117 -10.52118 -10.11040 -9.29285 -8.59866 -7.86391 -5.49320 -0.47935 0.15824 1.42775 1.47329 1.53490 1.71493 2.09355 2.46133 2.49438 2.75121 3.20288 3.20849 3.59368 3.62225 3.72661 3.78637 3.85331 3.97605 3.99996 4.15437 4.22143 4.31689 4.32837 4.38262 4.50755 4.51976 4.56523 4.64599 4.68179 4.72733 4.78510 4.85541 4.89330 4.97034 4.98296 4.99838 5.05404 5.14276 5.15766 5.22997 5.24784 5.26433 5.29697 5.36119 5.44112 5.55744 5.62932 5.65403 5.73329 5.97679 6.43107 6.50716 6.71865 7.11306 7.16508 7.82053 8.34113 9.09160 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.002206 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.926563 B =12688.815831 C =13629.411500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.268 4.268 6 H 0.052 0.948 7 C -0.028 4.028 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.271 1.271 13 C 0.144 3.856 14 C 0.120 3.880 15 N -0.707 5.707 16 C 0.560 3.440 17 O -0.584 6.584 18 C -0.224 4.224 19 C -0.002 4.002 20 C -0.180 4.180 21 C 0.318 3.682 22 N -0.469 5.469 23 C 0.040 3.960 24 C -0.118 4.118 25 C -0.130 4.130 26 C 0.029 3.971 27 N -0.534 5.534 28 C 0.166 3.834 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.409 0.591 42 H 0.150 0.850 43 H 0.169 0.831 44 H 0.107 0.893 45 H 0.052 0.948 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 -5.112 -24.827 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.398 4.398 6 H 0.070 0.930 7 C -0.226 4.226 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.217 1.217 11 H -0.216 1.216 12 H -0.196 1.196 13 C 0.017 3.983 14 C -0.006 4.006 15 N -0.358 5.358 16 C 0.348 3.652 17 O -0.466 6.466 18 C -0.230 4.230 19 C -0.028 4.028 20 C -0.202 4.202 21 C 0.086 3.914 22 N -0.186 5.186 23 C -0.085 4.085 24 C -0.156 4.156 25 C -0.168 4.168 26 C -0.097 4.097 27 N -0.248 5.248 28 C 0.007 3.993 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.246 0.754 42 H 0.168 0.832 43 H 0.186 0.814 44 H 0.126 0.874 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.094 0.906 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.104 -5.158 -24.788 25.508 hybrid contribution 0.145 -0.220 1.470 1.494 sum 3.248 -5.378 -23.317 24.149 Atomic orbital electron populations 1.21653 0.94263 1.01770 1.01992 1.22021 0.96420 0.98784 1.00284 1.21051 0.83284 0.94529 0.99111 1.43831 1.00870 1.85045 1.01925 1.19147 1.06187 1.19807 0.94678 0.93046 1.25738 1.02112 0.94752 1.00020 1.70068 1.25855 1.15484 1.43843 0.85563 0.79660 0.77256 0.79759 1.21739 1.21555 1.19624 1.20938 0.99306 0.91808 0.86290 1.21986 0.94390 1.01156 0.83081 1.45875 1.57375 1.09176 1.23418 1.18366 0.78629 0.84021 0.84193 1.90738 1.56978 1.27758 1.71121 1.20759 1.07957 0.96599 0.97703 1.21435 0.90638 0.98948 0.91795 1.21467 1.02860 0.97722 0.98178 1.20482 0.87964 0.89838 0.93119 1.61803 1.38005 1.18350 1.00474 1.23502 0.95175 1.02023 0.87783 1.22539 1.01995 0.94659 0.96367 1.22455 1.03391 0.98145 0.92796 1.22952 1.02771 0.86582 0.97431 1.67697 1.15362 1.32879 1.08882 1.23015 0.89582 0.96365 0.90313 0.92287 0.92600 0.92087 0.93584 0.94297 0.94623 0.93178 0.93704 0.90797 0.93542 0.92998 0.94979 0.75360 0.83199 0.81377 0.87449 0.92905 0.88647 0.89625 0.90549 0.89656 0.91134 0.90637 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.14 -4.87 6.23 30.59 0.19 -4.68 16 3 C 0.15 5.95 5.72 86.38 0.49 6.45 16 4 N -0.60 -28.82 2.43 -702.01 -1.71 -30.53 16 5 C -0.27 -14.47 9.45 84.03 0.79 -13.68 16 6 H 0.05 2.83 7.92 -2.91 -0.02 2.81 16 7 C -0.03 -1.53 4.95 84.86 0.42 -1.11 16 8 N -0.91 -50.94 11.47 21.65 0.25 -50.69 16 9 Si 0.95 44.61 29.60 68.60 2.03 46.64 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.14 6.35 5.45 86.38 0.47 6.82 16 14 C 0.12 4.92 6.00 86.38 0.52 5.44 16 15 N -0.71 -23.87 5.51 -466.27 -2.57 -26.44 16 16 C 0.56 19.36 7.77 86.70 0.67 20.03 16 17 O -0.58 -24.55 16.41 -4.03 -0.07 -24.61 16 18 C -0.22 -6.14 5.89 -19.99 -0.12 -6.26 16 19 C 0.00 -0.05 9.65 22.46 0.22 0.17 16 20 C -0.18 -3.52 9.38 22.23 0.21 -3.31 16 21 C 0.32 6.85 6.20 133.25 0.83 7.68 16 22 N -0.47 -8.23 5.28 -689.51 -3.64 -11.87 16 23 C 0.04 0.46 6.03 86.65 0.52 0.98 16 24 C -0.12 -0.95 7.06 31.80 0.22 -0.73 16 25 C -0.13 -1.35 6.93 31.46 0.22 -1.13 16 26 C 0.03 0.49 6.34 86.44 0.55 1.04 16 27 N -0.53 -12.88 8.10 -192.31 -1.56 -14.44 16 28 C 0.17 4.04 10.71 85.03 0.91 4.95 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.70 6.64 -2.39 -0.02 1.69 16 33 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 35 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 36 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.07 3.70 5.52 -2.39 -0.01 3.69 16 38 H 0.05 1.86 7.86 -2.39 -0.02 1.84 16 39 H 0.05 2.15 6.64 -2.38 -0.02 2.13 16 40 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.41 11.44 6.52 -92.71 -0.60 10.83 16 42 H 0.15 3.47 7.73 -2.91 -0.02 3.45 16 43 H 0.17 2.27 8.01 -2.91 -0.02 2.25 16 44 H 0.11 0.91 8.11 -2.39 -0.02 0.89 16 45 H 0.05 0.68 7.99 -2.39 -0.02 0.66 16 46 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 1.40 6.48 -2.38 -0.02 1.38 16 51 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.18 3.57 6.41 -2.91 -0.02 3.55 16 Total: -1.00 -68.09 415.28 0.88 -67.21 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.31 Total: 25.18 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 7.83 Total: 19.54 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -9.23 Total: -133.96 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.07 Total: -24.61 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.09 0.88 -67.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481149506.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.158 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds