Wall clock time and date at job start Wed Apr 1 2020 05:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 N 1.46500 * 109.47120 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00241 * 269.65666 * 4 3 2 6 6 O 1.21604 * 120.00334 * 187.05660 * 5 4 3 7 7 C 1.47430 * 120.00005 * 7.06035 * 5 4 3 8 8 C 1.41460 * 126.48762 * 7.68965 * 7 5 4 9 9 N 1.30613 * 108.07503 * 179.81049 * 8 7 5 10 10 N 1.39623 * 108.86476 * 0.42281 * 9 8 7 11 11 C 1.34595 * 108.34281 * 359.75930 * 10 9 8 12 12 C 1.50804 * 124.57710 * 179.97438 * 11 10 9 13 13 C 1.53456 * 108.19639 * 344.33110 * 12 11 10 14 14 C 1.53159 * 109.11802 * 48.34817 * 13 12 11 15 15 C 1.46695 * 127.22581 * 179.80029 * 10 9 8 16 16 C 1.46498 * 119.99729 * 89.65861 * 4 3 2 17 17 H 1.09001 * 110.88747 * 3.81943 * 16 4 3 18 18 C 1.55151 * 111.03831 * 239.90778 * 16 4 3 19 19 C 1.54324 * 102.94602 * 277.41374 * 18 16 4 20 20 N 1.47022 * 107.26889 * 337.80921 * 19 18 16 21 21 C 1.36938 * 125.64576 * 178.97424 * 20 19 18 22 22 H 1.08001 * 119.99664 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00100 * 359.95903 * 21 20 19 24 24 N 1.31614 * 120.00077 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99886 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46967 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47404 * 119.99547 * 25 23 21 28 28 H 1.48503 * 109.47004 * 239.99686 * 25 23 21 29 29 C 1.47422 * 108.70260 * 358.93538 * 20 19 18 30 30 H 1.09004 * 109.47811 * 299.99660 * 1 2 3 31 31 H 1.09006 * 109.47314 * 59.99940 * 1 2 3 32 32 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47403 * 239.99791 * 2 1 3 34 34 H 1.09006 * 109.47314 * 120.00060 * 2 1 3 35 35 H 1.09009 * 109.46993 * 60.00098 * 3 2 1 36 36 H 1.08998 * 109.47260 * 300.00007 * 3 2 1 37 37 H 1.07999 * 125.96393 * 359.97438 * 8 7 5 38 38 H 1.08997 * 109.71984 * 104.00372 * 12 11 10 39 39 H 1.08999 * 109.71854 * 224.65695 * 12 11 10 40 40 H 1.09006 * 109.52689 * 168.24063 * 13 12 11 41 41 H 1.08998 * 109.53000 * 288.45336 * 13 12 11 42 42 H 1.08994 * 109.46153 * 50.78845 * 14 13 12 43 43 H 1.09001 * 109.45665 * 170.75964 * 14 13 12 44 44 H 1.09002 * 109.57599 * 42.75009 * 15 10 9 45 45 H 1.08995 * 109.68158 * 282.43006 * 15 10 9 46 46 H 1.08999 * 110.71969 * 35.77569 * 18 16 4 47 47 H 1.08998 * 110.72531 * 159.04923 * 18 16 4 48 48 H 1.09002 * 109.88065 * 97.21795 * 19 18 16 49 49 H 1.08998 * 109.88736 * 218.38586 * 19 18 16 50 50 H 0.97002 * 120.00103 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.37132 * 265.29212 * 29 20 19 52 52 H 1.09003 * 110.36403 * 142.97145 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1783 1.4497 1.1680 6 8 5.3874 1.5791 1.1717 7 6 3.4491 1.3006 2.4406 8 6 2.0770 0.9917 2.5927 9 7 1.8117 0.9435 3.8707 10 7 2.9782 1.2239 4.5848 11 6 3.9723 1.4413 3.7038 12 6 5.3931 1.7763 4.0821 13 6 5.4082 2.2059 5.5552 14 6 4.6252 1.1833 6.3840 15 6 3.1346 1.2805 6.0423 16 6 4.2379 1.4348 -1.2678 17 1 3.5525 1.4975 -2.1131 18 6 5.1452 0.1812 -1.3791 19 6 6.4043 0.5943 -0.5882 20 7 6.4390 2.0638 -0.5595 21 6 7.3897 2.8277 0.0633 22 1 7.3263 3.9051 0.0259 23 6 8.4347 2.2170 0.7430 24 7 8.5116 0.9040 0.7892 25 14 9.7312 3.2590 1.5932 26 1 9.4190 4.6971 1.3943 27 1 9.7401 2.9503 3.0457 28 1 11.0655 2.9580 1.0150 29 6 5.2813 2.5788 -1.3131 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6765 1.9564 0.8901 36 1 1.6766 1.9564 -0.8900 37 1 1.3724 0.8223 1.7919 38 1 6.0259 0.8989 3.9485 39 1 5.7575 2.5918 3.4575 40 1 6.4376 2.2518 5.9109 41 1 4.9436 3.1870 5.6534 42 1 4.9854 0.1799 6.1575 43 1 4.7683 1.3896 7.4447 44 1 2.6007 0.4473 6.4995 45 1 2.7334 2.2216 6.4183 46 1 4.6669 -0.6832 -0.9185 47 1 5.3939 -0.0238 -2.4204 48 1 6.3478 0.2050 0.4283 49 1 7.2961 0.2120 -1.0848 50 1 9.2416 0.4773 1.2645 51 1 5.5644 2.7935 -2.3436 52 1 4.8843 3.4737 -0.8337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481408748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:17 Heat of formation + Delta-G solvation = 134.972460 kcal Electronic energy + Delta-G solvation = -33786.301468 eV Core-core repulsion = 29791.026195 eV Total energy + Delta-G solvation = -3995.275273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.47025 -39.42538 -36.76362 -35.77636 -35.67867 -32.87244 -32.10047 -31.37217 -30.20279 -28.96279 -28.22046 -27.06948 -25.68613 -24.26110 -24.12804 -22.81910 -21.76698 -21.45426 -20.64083 -19.72076 -18.82571 -17.93718 -16.91691 -16.32668 -16.02456 -15.63652 -15.45028 -14.85556 -14.59339 -14.32120 -14.18879 -13.94414 -13.75378 -13.64189 -13.56114 -13.34017 -13.11602 -12.49901 -12.39582 -11.89937 -11.82480 -11.72756 -11.66565 -11.55667 -11.38558 -11.23657 -11.15391 -11.03630 -10.86506 -10.74099 -10.67543 -10.64995 -10.46791 -10.40102 -9.86619 -9.82373 -9.52883 -9.32604 -9.02485 -8.47293 -8.26470 -8.05559 -7.55271 -6.14657 -5.32415 -2.56619 1.99105 2.55109 2.61583 3.54449 3.60880 3.62294 3.68488 4.31385 4.38386 4.60810 4.75901 4.78058 4.80811 4.93490 5.01812 5.08255 5.17279 5.24130 5.35928 5.40176 5.41655 5.52630 5.59729 5.61044 5.67448 5.73013 5.77474 5.81652 5.82303 5.87867 5.97372 5.99190 6.02145 6.09511 6.17948 6.22661 6.31482 6.38902 6.40684 6.53587 6.68186 6.72285 6.76439 6.81341 6.93274 7.17001 7.51758 7.87455 7.88371 8.03890 8.25947 8.34013 8.66334 9.47045 9.60768 10.23196 10.90987 11.80448 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.006237 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.218828 B = 4488.091027 C = 7242.960911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.160 4.160 3 C 0.102 3.898 4 N -0.609 5.609 5 C 0.532 3.468 6 O -0.405 6.405 7 C -0.274 4.274 8 C 0.039 3.961 9 N -0.312 5.312 10 N -0.369 5.369 11 C 0.153 3.847 12 C -0.056 4.056 13 C -0.129 4.129 14 C -0.138 4.138 15 C 0.134 3.866 16 C 0.138 3.862 17 H 0.079 0.921 18 C -0.160 4.160 19 C 0.193 3.807 20 N -0.567 5.567 21 C -0.187 4.187 22 H 0.065 0.935 23 C -0.005 4.005 24 N -0.917 5.917 25 Si 0.892 3.108 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.297 1.297 29 C 0.129 3.871 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.212 0.788 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.024 0.976 50 H 0.241 0.759 51 H 0.019 0.981 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.711 -1.269 5.544 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.198 4.198 3 C -0.023 4.023 4 N -0.346 5.346 5 C 0.317 3.683 6 O -0.271 6.271 7 C -0.289 4.289 8 C -0.147 4.147 9 N -0.131 5.131 10 N -0.151 5.151 11 C 0.023 3.977 12 C -0.095 4.095 13 C -0.167 4.167 14 C -0.176 4.176 15 C 0.013 3.987 16 C 0.033 3.967 17 H 0.097 0.903 18 C -0.199 4.199 19 C 0.069 3.931 20 N -0.292 5.292 21 C -0.316 4.316 22 H 0.083 0.917 23 C -0.200 4.200 24 N -0.567 5.567 25 Si 0.725 3.275 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.225 1.225 29 C 0.001 3.999 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.227 0.773 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.042 0.958 50 H 0.052 0.948 51 H 0.036 0.964 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.700 -1.400 6.748 17.146 hybrid contribution 0.962 0.528 -0.035 1.098 sum -14.738 -0.872 6.713 16.218 Atomic orbital electron populations 1.21786 0.95546 1.01978 1.01860 1.22269 0.95579 0.98466 1.03521 1.21926 0.81729 0.95825 1.02781 1.47498 1.04509 1.77174 1.05391 1.17502 0.88087 0.80708 0.81975 1.91534 1.10136 1.40517 1.84902 1.20250 0.94285 1.20302 0.94051 1.25478 0.96405 0.98431 0.94413 1.77000 1.06062 1.24749 1.05339 1.48482 1.06371 1.54037 1.06177 1.21417 0.92047 0.95344 0.88908 1.20538 0.88817 1.04697 0.95409 1.21753 1.01355 0.98431 0.95115 1.21985 0.92843 1.01521 1.01247 1.21789 0.98093 1.03331 0.75451 1.22217 0.92857 0.97392 0.84217 0.90328 1.23371 0.99585 0.96543 1.00409 1.21165 0.90138 0.84230 0.97578 1.44106 1.24564 1.01499 1.59014 1.18820 0.99565 0.88842 1.24371 0.91736 1.24500 0.98738 0.95326 1.01481 1.69970 1.32294 1.06647 1.47800 0.86314 0.82428 0.79283 0.79484 1.21139 1.22379 1.22533 1.21791 0.88723 0.94458 0.94922 0.92614 0.92402 0.92471 0.91052 0.90817 0.89892 0.91094 0.77264 0.88337 0.87226 0.90102 0.91521 0.90508 0.89284 0.89235 0.90077 0.92607 0.92369 0.91406 0.95797 0.94820 0.96388 0.94844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.72 37.15 0.36 -0.95 16 2 C -0.16 -1.77 5.23 -26.74 -0.14 -1.91 16 3 C 0.10 1.28 4.87 -4.04 -0.02 1.26 16 4 N -0.61 -10.34 2.56 -164.93 -0.42 -10.76 16 5 C 0.53 10.72 7.11 -12.52 -0.09 10.63 16 6 O -0.40 -9.81 7.49 5.27 0.04 -9.77 16 7 C -0.27 -4.97 5.91 -105.22 -0.62 -5.59 16 8 C 0.04 0.60 8.57 -16.84 -0.14 0.45 16 9 N -0.31 -5.00 12.54 30.92 0.39 -4.61 16 10 N -0.37 -5.61 4.01 -56.39 -0.23 -5.84 16 11 C 0.15 2.65 6.65 -81.62 -0.54 2.11 16 12 C -0.06 -0.95 5.32 -27.60 -0.15 -1.10 16 13 C -0.13 -1.60 5.98 -26.41 -0.16 -1.75 16 14 C -0.14 -1.37 5.93 -26.53 -0.16 -1.53 16 15 C 0.13 1.46 7.27 -3.81 -0.03 1.43 16 16 C 0.14 2.44 3.81 -65.78 -0.25 2.19 16 17 H 0.08 1.14 7.87 -51.93 -0.41 0.73 16 18 C -0.16 -3.13 6.44 -24.90 -0.16 -3.29 16 19 C 0.19 4.89 4.17 -3.06 -0.01 4.87 16 20 N -0.57 -14.71 1.78 -170.07 -0.30 -15.01 16 21 C -0.19 -5.34 9.03 -15.06 -0.14 -5.47 16 22 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 24 N -0.92 -27.61 10.31 55.49 0.57 -27.04 16 25 Si 0.89 22.83 29.55 -169.99 -5.02 17.81 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 28 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 29 C 0.13 2.76 6.39 -2.53 -0.02 2.75 16 30 H 0.05 0.46 7.27 -51.93 -0.38 0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.95 6.18 -51.93 -0.32 0.63 16 35 H 0.08 1.05 4.87 -51.92 -0.25 0.80 16 36 H 0.07 0.77 7.94 -51.93 -0.41 0.35 16 37 H 0.21 2.70 2.11 -52.49 -0.11 2.59 16 38 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.11 2.18 7.65 -51.93 -0.40 1.78 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 42 H 0.08 0.83 8.12 -51.93 -0.42 0.40 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.07 1.94 5.37 -51.93 -0.28 1.66 16 49 H 0.02 0.69 7.51 -51.93 -0.39 0.30 16 50 H 0.24 7.15 8.31 -40.82 -0.34 6.81 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 52 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -34.06 384.28 -9.95 -44.01 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.41 Total: 1.58 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -2.36 Total: 3.84 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.01 Total: -63.26 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.04 Total: -9.77 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.06 -9.95 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481408748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.982 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds