Wall clock time and date at job start Wed Apr 1 2020 05:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 N 1.46500 * 109.47120 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00241 * 269.65666 * 4 3 2 6 6 O 1.21604 * 120.00334 * 187.05660 * 5 4 3 7 7 C 1.47430 * 120.00005 * 7.06035 * 5 4 3 8 8 C 1.41460 * 126.48762 * 7.68965 * 7 5 4 9 9 N 1.30613 * 108.07503 * 179.81049 * 8 7 5 10 10 N 1.39623 * 108.86476 * 0.42281 * 9 8 7 11 11 C 1.34595 * 108.34281 * 359.75930 * 10 9 8 12 12 C 1.50804 * 124.57710 * 179.97438 * 11 10 9 13 13 C 1.53456 * 108.19639 * 344.33110 * 12 11 10 14 14 C 1.53159 * 109.11802 * 48.34817 * 13 12 11 15 15 C 1.46695 * 127.22581 * 179.80029 * 10 9 8 16 16 C 1.46498 * 119.99729 * 89.65861 * 4 3 2 17 17 H 1.09001 * 110.88747 * 3.81943 * 16 4 3 18 18 C 1.55151 * 111.03831 * 239.90778 * 16 4 3 19 19 C 1.54324 * 102.94602 * 277.41374 * 18 16 4 20 20 N 1.47022 * 107.26889 * 337.80921 * 19 18 16 21 21 C 1.36938 * 125.64576 * 178.97424 * 20 19 18 22 22 H 1.08001 * 119.99664 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00100 * 359.95903 * 21 20 19 24 24 N 1.31614 * 120.00077 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99886 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46967 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47404 * 119.99547 * 25 23 21 28 28 H 1.48503 * 109.47004 * 239.99686 * 25 23 21 29 29 C 1.47422 * 108.70260 * 358.93538 * 20 19 18 30 30 H 1.09004 * 109.47811 * 299.99660 * 1 2 3 31 31 H 1.09006 * 109.47314 * 59.99940 * 1 2 3 32 32 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47403 * 239.99791 * 2 1 3 34 34 H 1.09006 * 109.47314 * 120.00060 * 2 1 3 35 35 H 1.09009 * 109.46993 * 60.00098 * 3 2 1 36 36 H 1.08998 * 109.47260 * 300.00007 * 3 2 1 37 37 H 1.07999 * 125.96393 * 359.97438 * 8 7 5 38 38 H 1.08997 * 109.71984 * 104.00372 * 12 11 10 39 39 H 1.08999 * 109.71854 * 224.65695 * 12 11 10 40 40 H 1.09006 * 109.52689 * 168.24063 * 13 12 11 41 41 H 1.08998 * 109.53000 * 288.45336 * 13 12 11 42 42 H 1.08994 * 109.46153 * 50.78845 * 14 13 12 43 43 H 1.09001 * 109.45665 * 170.75964 * 14 13 12 44 44 H 1.09002 * 109.57599 * 42.75009 * 15 10 9 45 45 H 1.08995 * 109.68158 * 282.43006 * 15 10 9 46 46 H 1.08999 * 110.71969 * 35.77569 * 18 16 4 47 47 H 1.08998 * 110.72531 * 159.04923 * 18 16 4 48 48 H 1.09002 * 109.88065 * 97.21795 * 19 18 16 49 49 H 1.08998 * 109.88736 * 218.38586 * 19 18 16 50 50 H 0.97002 * 120.00103 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.37132 * 265.29212 * 29 20 19 52 52 H 1.09003 * 110.36403 * 142.97145 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1783 1.4497 1.1680 6 8 5.3874 1.5791 1.1717 7 6 3.4491 1.3006 2.4406 8 6 2.0770 0.9917 2.5927 9 7 1.8117 0.9435 3.8707 10 7 2.9782 1.2239 4.5848 11 6 3.9723 1.4413 3.7038 12 6 5.3931 1.7763 4.0821 13 6 5.4082 2.2059 5.5552 14 6 4.6252 1.1833 6.3840 15 6 3.1346 1.2805 6.0423 16 6 4.2379 1.4348 -1.2678 17 1 3.5525 1.4975 -2.1131 18 6 5.1452 0.1812 -1.3791 19 6 6.4043 0.5943 -0.5882 20 7 6.4390 2.0638 -0.5595 21 6 7.3897 2.8277 0.0633 22 1 7.3263 3.9051 0.0259 23 6 8.4347 2.2170 0.7430 24 7 8.5116 0.9040 0.7892 25 14 9.7312 3.2590 1.5932 26 1 9.4190 4.6971 1.3943 27 1 9.7401 2.9503 3.0457 28 1 11.0655 2.9580 1.0150 29 6 5.2813 2.5788 -1.3131 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6765 1.9564 0.8901 36 1 1.6766 1.9564 -0.8900 37 1 1.3724 0.8223 1.7919 38 1 6.0259 0.8989 3.9485 39 1 5.7575 2.5918 3.4575 40 1 6.4376 2.2518 5.9109 41 1 4.9436 3.1870 5.6534 42 1 4.9854 0.1799 6.1575 43 1 4.7683 1.3896 7.4447 44 1 2.6007 0.4473 6.4995 45 1 2.7334 2.2216 6.4183 46 1 4.6669 -0.6832 -0.9185 47 1 5.3939 -0.0238 -2.4204 48 1 6.3478 0.2050 0.4283 49 1 7.2961 0.2120 -1.0848 50 1 9.2416 0.4773 1.2645 51 1 5.5644 2.7935 -2.3436 52 1 4.8843 3.4737 -0.8337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481408748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:16 Heat of formation + Delta-G solvation = 114.566352 kcal Electronic energy + Delta-G solvation = -33787.186343 eV Core-core repulsion = 29791.026195 eV Total energy + Delta-G solvation = -3996.160148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.72414 -40.91165 -38.00785 -37.42130 -36.85245 -34.51773 -33.29557 -32.99735 -31.34803 -30.82721 -29.61156 -28.65315 -26.78457 -26.23348 -25.27578 -24.14872 -22.92641 -22.43002 -22.01370 -21.65659 -20.05274 -19.33034 -18.64843 -17.95687 -17.19388 -16.94904 -16.63956 -16.42581 -16.30326 -15.90348 -15.55543 -15.31268 -15.14687 -15.01397 -14.77250 -14.39775 -14.25767 -13.76141 -13.59804 -13.51695 -13.35897 -13.24597 -12.90965 -12.85103 -12.76732 -12.71512 -12.60468 -12.33505 -12.24151 -12.03086 -11.96519 -11.90914 -11.89146 -11.69904 -11.60716 -11.53690 -11.41534 -11.25204 -10.49123 -10.22996 -9.95659 -9.43840 -9.14135 -8.20011 -7.54380 -4.77574 0.65688 1.31562 1.44167 1.45170 1.46123 1.54857 2.37239 2.64971 2.85361 3.39212 3.54855 3.62941 3.72288 3.74212 3.87501 3.94755 4.04880 4.08146 4.11302 4.26767 4.30799 4.33733 4.35052 4.39159 4.45179 4.51811 4.63910 4.66071 4.70561 4.75700 4.78312 4.82153 4.90437 4.97988 5.01802 5.05578 5.06724 5.12340 5.15609 5.18008 5.23706 5.29227 5.34076 5.51893 5.58199 5.61586 5.92689 5.95650 6.10922 6.21562 6.51572 6.62221 6.91784 7.41225 7.97617 8.12988 8.77806 9.57273 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.006237 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.218828 B = 4488.091027 C = 7242.960911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 C 0.097 3.903 4 N -0.606 5.606 5 C 0.525 3.475 6 O -0.459 6.459 7 C -0.302 4.302 8 C 0.050 3.950 9 N -0.318 5.318 10 N -0.362 5.362 11 C 0.139 3.861 12 C -0.049 4.049 13 C -0.123 4.123 14 C -0.128 4.128 15 C 0.123 3.877 16 C 0.152 3.848 17 H 0.131 0.869 18 C -0.145 4.145 19 C 0.206 3.794 20 N -0.580 5.580 21 C -0.189 4.189 22 H 0.058 0.942 23 C -0.058 4.058 24 N -0.943 5.943 25 Si 0.949 3.051 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.300 1.300 29 C 0.123 3.877 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.236 0.764 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.130 0.870 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.029 0.971 49 H -0.024 1.024 50 H 0.231 0.769 51 H 0.032 0.968 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.174 -0.806 5.905 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C -0.025 4.025 4 N -0.342 5.342 5 C 0.311 3.689 6 O -0.329 6.329 7 C -0.317 4.317 8 C -0.135 4.135 9 N -0.138 5.138 10 N -0.144 5.144 11 C 0.007 3.993 12 C -0.088 4.088 13 C -0.160 4.160 14 C -0.166 4.166 15 C 0.004 3.996 16 C 0.047 3.953 17 H 0.149 0.851 18 C -0.185 4.185 19 C 0.082 3.918 20 N -0.304 5.304 21 C -0.319 4.319 22 H 0.076 0.924 23 C -0.250 4.250 24 N -0.595 5.595 25 Si 0.781 3.219 26 H -0.201 1.201 27 H -0.224 1.224 28 H -0.228 1.228 29 C -0.004 4.004 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.251 0.749 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.148 0.852 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.047 0.953 49 H -0.006 1.006 50 H 0.041 0.959 51 H 0.049 0.951 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -19.246 -0.919 7.103 20.536 hybrid contribution 1.971 0.418 -0.140 2.020 sum -17.276 -0.501 6.963 18.633 Atomic orbital electron populations 1.21753 0.93140 1.02800 1.02928 1.22165 0.97492 0.96864 1.02584 1.22213 0.78686 0.97317 1.04299 1.47563 1.06464 1.75933 1.04202 1.17950 0.87800 0.79698 0.83424 1.91521 1.12337 1.43175 1.85862 1.20322 0.95703 1.21970 0.93668 1.25761 0.95449 0.97383 0.94902 1.76959 1.06431 1.24847 1.05516 1.48854 1.05360 1.52608 1.07535 1.21444 0.92423 0.95790 0.89604 1.20293 0.88463 1.01836 0.98169 1.21736 1.02536 0.99679 0.92080 1.21980 0.91751 0.99915 1.02947 1.22263 0.98939 1.05430 0.72990 1.22182 0.92856 0.94097 0.86161 0.85098 1.23196 0.97111 0.97627 1.00538 1.20789 0.91113 0.84003 0.95917 1.44237 1.25431 1.01796 1.58930 1.19025 1.00110 0.88856 1.23955 0.92395 1.25126 1.00853 0.96290 1.02748 1.70218 1.32483 1.08054 1.48699 0.85395 0.79812 0.78407 0.78242 1.20057 1.22445 1.22849 1.22004 0.88409 0.95506 0.94472 0.92200 0.90679 0.91844 0.90879 0.92977 0.89938 0.87994 0.74907 0.91521 0.91325 0.89564 0.90517 0.91589 0.85155 0.87141 0.87820 0.91897 0.90209 0.95278 1.00555 0.95909 0.95073 0.95835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.72 71.98 0.70 -1.26 16 2 C -0.15 -2.93 5.23 30.59 0.16 -2.77 16 3 C 0.10 2.15 4.87 86.38 0.42 2.57 16 4 N -0.61 -19.88 2.56 -793.97 -2.03 -21.91 16 5 C 0.52 21.80 7.11 86.67 0.62 22.42 16 6 O -0.46 -23.69 7.49 -4.04 -0.03 -23.72 16 7 C -0.30 -11.16 5.91 -20.25 -0.12 -11.28 16 8 C 0.05 1.51 8.57 85.67 0.73 2.24 16 9 N -0.32 -9.67 12.54 -56.07 -0.70 -10.37 16 10 N -0.36 -10.65 4.01 -332.32 -1.33 -11.98 16 11 C 0.14 4.97 6.65 41.98 0.28 5.25 16 12 C -0.05 -1.78 5.32 30.03 0.16 -1.62 16 13 C -0.12 -3.03 5.98 30.80 0.18 -2.85 16 14 C -0.13 -2.30 5.93 30.73 0.18 -2.12 16 15 C 0.12 2.35 7.27 86.42 0.63 2.98 16 16 C 0.15 5.07 3.81 46.38 0.18 5.25 16 17 H 0.13 3.13 7.87 -2.39 -0.02 3.11 16 18 C -0.15 -5.62 6.44 31.78 0.20 -5.41 16 19 C 0.21 11.00 4.17 86.73 0.36 11.37 16 20 N -0.58 -31.32 1.78 -691.99 -1.23 -32.55 16 21 C -0.19 -11.34 9.03 84.03 0.76 -10.58 16 22 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 23 C -0.06 -3.53 5.48 84.86 0.47 -3.07 16 24 N -0.94 -60.59 10.31 21.65 0.22 -60.37 16 25 Si 0.95 49.25 29.55 68.60 2.03 51.28 16 26 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 28 H -0.30 -15.61 7.11 99.48 0.71 -14.91 16 29 C 0.12 5.23 6.39 86.86 0.55 5.79 16 30 H 0.06 0.76 7.27 -2.38 -0.02 0.74 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.25 6.18 -2.38 -0.01 1.23 16 35 H 0.08 1.88 4.87 -2.38 -0.01 1.87 16 36 H 0.10 1.69 7.94 -2.39 -0.02 1.68 16 37 H 0.24 5.51 2.11 -2.91 -0.01 5.50 16 38 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.07 3.03 7.65 -2.39 -0.02 3.01 16 40 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 42 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 43 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 48 H 0.03 1.80 5.37 -2.39 -0.01 1.79 16 49 H -0.02 -1.44 7.51 -2.39 -0.02 -1.46 16 50 H 0.23 14.66 8.31 -92.71 -0.77 13.88 16 51 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -81.95 384.28 4.30 -77.65 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.92 Total: 15.05 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 6.47 Total: 16.92 kcal Atomic # 7 Polarization: -132.11 SS G_CDS: -5.08 Total: -137.19 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.03 Total: -23.72 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.03 Total: 51.28 kcal Total: -81.95 4.30 -77.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481408748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.215 kcal (2) G-P(sol) polarization free energy of solvation -81.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds