Wall clock time and date at job start Wed Apr 1 2020 05:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47196 * 2 1 4 4 N 1.46503 * 109.47125 * 300.00003 * 3 2 1 5 5 C 1.36932 * 120.00219 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.38813 * 119.99693 * 180.02562 * 5 4 3 8 8 N 1.31615 * 120.00420 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99717 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47095 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47009 * 299.99937 * 9 7 5 13 13 N 1.46496 * 109.47224 * 239.99753 * 2 1 3 14 14 C 1.34772 * 120.00358 * 183.94575 * 13 2 1 15 15 O 1.21576 * 119.99663 * 5.19319 * 14 13 2 16 16 C 1.47708 * 120.00463 * 185.19170 * 14 13 2 17 17 N 1.32045 * 126.64447 * 359.68916 * 16 14 13 18 18 N 1.28679 * 110.10411 * 179.74107 * 17 16 14 19 19 H 0.96998 * 124.94605 * 179.82191 * 18 17 16 20 20 C 1.34769 * 110.10399 * 0.13203 * 18 17 16 21 21 C 1.35174 * 107.18652 * 0.32481 * 20 18 17 22 22 C 1.50380 * 126.25586 * 178.84682 * 21 20 18 23 23 C 1.53217 * 109.05136 * 27.92111 * 22 21 20 24 24 C 1.52649 * 109.65602 * 271.33642 * 23 22 21 25 25 C 1.52615 * 110.80695 * 61.53833 * 24 23 22 26 26 C 1.50689 * 127.33594 * 180.91295 * 20 18 17 27 27 C 1.53001 * 109.47091 * 119.99656 * 2 1 3 28 28 C 1.53006 * 117.51736 * 348.45456 * 27 2 1 29 29 C 1.53005 * 117.49954 * 57.08423 * 27 2 1 30 30 H 1.09001 * 109.46751 * 299.99887 * 1 2 3 31 31 H 1.08994 * 109.46770 * 60.00541 * 1 2 3 32 32 H 1.09006 * 109.46863 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47329 * 59.99617 * 3 2 1 34 34 H 1.08994 * 109.47246 * 179.97438 * 3 2 1 35 35 H 0.97005 * 119.99369 * 0.02562 * 4 3 2 36 36 H 0.97004 * 119.99789 * 180.02562 * 8 7 5 37 37 H 0.97001 * 119.99662 * 3.93997 * 13 2 1 38 38 H 1.09003 * 109.54162 * 147.79543 * 22 21 20 39 39 H 1.09006 * 109.54116 * 268.04791 * 22 21 20 40 40 H 1.08999 * 109.44006 * 151.28009 * 23 22 21 41 41 H 1.09002 * 109.41201 * 31.38016 * 23 22 21 42 42 H 1.09002 * 109.20915 * 301.20218 * 24 23 22 43 43 H 1.08995 * 109.17214 * 181.86020 * 24 23 22 44 44 H 1.09000 * 109.41163 * 273.51160 * 25 24 23 45 45 H 1.09001 * 109.40600 * 153.73160 * 25 24 23 46 46 H 1.08998 * 109.52497 * 346.40751 * 26 20 18 47 47 H 1.09001 * 109.53224 * 106.54760 * 26 20 18 48 48 H 1.09000 * 115.55170 * 202.75367 * 27 2 1 49 49 H 1.09002 * 117.49846 * 214.96841 * 28 27 2 50 50 H 1.08996 * 117.49950 * 359.97438 * 28 27 2 51 51 H 1.09004 * 117.49693 * 359.97343 * 29 27 2 52 52 H 1.08993 * 117.50150 * 144.99420 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8830 3.4439 -1.4132 6 1 2.5039 3.9688 -0.7023 7 6 1.4198 4.0983 -2.5464 8 7 0.6627 3.4588 -3.4125 9 14 1.8710 5.8868 -2.8421 10 1 3.3477 6.0165 -2.9312 11 1 1.2564 6.3489 -4.1125 12 1 1.3682 6.7165 -1.7178 13 7 2.0184 -0.6906 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1215 -0.5703 -0.4924 16 6 3.8417 -1.4764 -2.6269 17 7 3.1155 -1.8679 -3.6579 18 7 3.8777 -2.3318 -4.5851 19 1 3.5686 -2.6805 -5.4359 20 6 5.1674 -2.2688 -4.1993 21 6 5.1869 -1.7391 -2.9558 22 6 6.4071 -1.5006 -2.1098 23 6 7.6142 -1.2735 -3.0257 24 6 8.2700 -2.6127 -3.3524 25 6 7.2977 -3.5258 -4.0941 26 6 6.3795 -2.6890 -4.9900 27 6 2.0401 -0.7212 1.2493 28 6 1.0222 -1.0407 2.3461 29 6 1.5802 -2.1638 1.4695 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 0.9937 1.6617 -1.8345 36 1 0.3393 3.9161 -4.2045 37 1 1.3899 -1.0090 -1.8629 38 1 6.2519 -0.6202 -1.4861 39 1 6.5878 -2.3698 -1.4773 40 1 8.3354 -0.6296 -2.5224 41 1 7.2841 -0.7964 -3.9485 42 1 8.5797 -3.0959 -2.4257 43 1 9.1464 -2.4392 -3.9767 44 1 6.6953 -4.0766 -3.3718 45 1 7.8591 -4.2301 -4.7081 46 1 6.0664 -3.2840 -5.8479 47 1 6.9137 -1.8041 -5.3358 48 1 3.0518 -0.4623 1.5615 49 1 1.3644 -0.9921 3.3799 50 1 -0.0109 -0.7368 2.1780 51 1 0.9140 -2.5989 0.7245 52 1 2.2894 -2.8539 1.9264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481951166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:00 Heat of formation + Delta-G solvation = 66.992531 kcal Electronic energy + Delta-G solvation = -32101.082391 eV Core-core repulsion = 28102.859287 eV Total energy + Delta-G solvation = -3998.223104 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.71199 -39.77565 -37.63593 -37.35338 -34.85576 -33.31641 -32.87276 -31.32731 -31.00447 -30.21950 -29.08320 -26.11511 -25.54183 -24.50671 -24.23321 -23.40875 -22.11965 -21.27232 -20.01266 -19.86212 -19.64329 -18.49069 -17.68058 -17.16109 -16.73366 -16.00921 -15.83789 -15.12696 -15.05158 -14.74274 -14.33707 -14.20935 -14.00833 -13.63766 -13.38224 -13.28937 -13.24592 -13.05167 -12.73850 -12.37266 -12.23280 -11.96773 -11.80695 -11.75166 -11.36642 -11.24953 -11.17092 -10.97507 -10.85196 -10.81885 -10.73535 -10.56658 -10.51187 -10.31144 -10.15639 -10.09474 -9.79821 -9.55874 -9.26440 -9.13543 -8.73514 -8.53270 -8.39998 -6.77158 -5.66124 -2.92249 1.84763 2.24314 2.92221 3.50238 3.52960 3.54064 3.55986 3.89120 4.23082 4.47357 4.56508 4.66233 4.67993 4.77267 4.93193 4.98658 5.05564 5.19540 5.20134 5.24668 5.31711 5.35475 5.45772 5.54241 5.57994 5.67427 5.69811 5.77589 5.78705 5.83585 5.85679 5.97131 5.97988 6.04334 6.09137 6.11539 6.14827 6.31971 6.32762 6.35262 6.38529 6.41368 6.62548 6.65233 6.70546 6.73364 6.98176 7.09465 7.21208 7.80568 7.90420 8.18242 8.53193 8.77484 9.64433 10.23539 10.59238 11.56939 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008235 B = 0.004067 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.342452 B = 6882.841593 C = 8901.234612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.201 3.799 3 C 0.147 3.853 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.697 5.697 14 C 0.614 3.386 15 O -0.528 6.528 16 C 0.001 3.999 17 N -0.256 5.256 18 N -0.381 5.381 19 H 0.442 0.558 20 C 0.006 3.994 21 C -0.137 4.137 22 C -0.043 4.043 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.113 4.113 26 C -0.048 4.048 27 C -0.140 4.140 28 C -0.184 4.184 29 C -0.175 4.175 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.382 0.618 36 H 0.253 0.747 37 H 0.401 0.599 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.117 0.883 49 H 0.089 0.911 50 H 0.099 0.901 51 H 0.089 0.911 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.218 -18.708 0.018 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.115 3.885 3 C 0.018 3.982 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.585 5.585 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.347 5.347 14 C 0.398 3.602 15 O -0.403 6.403 16 C -0.160 4.160 17 N -0.092 5.092 18 N -0.094 5.094 19 H 0.285 0.715 20 C -0.120 4.120 21 C -0.147 4.147 22 C -0.082 4.082 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.087 4.087 27 C -0.160 4.160 28 C -0.221 4.221 29 C -0.212 4.212 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.217 0.783 36 H 0.062 0.938 37 H 0.236 0.764 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.135 0.865 49 H 0.107 0.893 50 H 0.118 0.882 51 H 0.107 0.893 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.729 -18.330 0.347 20.305 hybrid contribution 0.233 0.640 -1.191 1.372 sum 8.961 -17.690 -0.844 19.848 Atomic orbital electron populations 1.22124 0.93580 1.01316 1.04157 1.20040 0.93494 0.92336 0.82589 1.21003 0.97871 0.88222 0.91062 1.42265 1.61230 1.10447 1.23108 1.19192 1.25010 0.87649 1.04288 0.91408 1.24667 1.00841 0.98064 0.97504 1.69647 1.39726 1.36012 1.13113 0.86303 0.77820 0.85346 0.76977 1.21447 1.21846 1.21351 1.45788 1.06665 1.58597 1.23626 1.16656 0.82419 0.77295 0.83823 1.90697 1.56050 1.51492 1.42016 1.21871 0.91907 1.06727 0.95452 1.73726 1.22698 1.14606 0.98156 1.43105 1.03929 1.46397 1.15969 0.71464 1.21059 0.86992 1.07084 0.96870 1.19843 0.94787 1.05029 0.95070 1.19968 0.89205 1.03024 0.95956 1.21715 0.97261 0.96873 1.00378 1.21517 0.97861 0.96026 1.00292 1.21505 0.97289 0.97702 0.98573 1.20211 0.91262 1.00674 0.96509 1.22602 0.99810 0.97172 0.96391 1.23138 0.99513 1.03598 0.95842 1.22785 1.03674 0.91711 1.03025 0.90666 0.90636 0.92863 0.95654 0.94374 0.78346 0.93755 0.76393 0.89178 0.91124 0.91589 0.91356 0.91797 0.92193 0.91456 0.91458 0.91133 0.89185 0.86546 0.89251 0.88242 0.89295 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 7.04 37.16 0.26 -2.17 16 2 C 0.20 3.52 0.54 -131.82 -0.07 3.45 16 3 C 0.15 3.23 5.02 -4.04 -0.02 3.21 16 4 N -0.73 -18.99 5.18 -59.91 -0.31 -19.30 16 5 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 8 N -0.94 -28.83 13.06 55.49 0.72 -28.11 16 9 Si 0.90 23.24 29.55 -169.99 -5.02 18.22 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 N -0.70 -12.34 4.71 -48.58 -0.23 -12.57 16 14 C 0.61 11.66 7.23 -12.39 -0.09 11.57 16 15 O -0.53 -10.80 12.06 5.30 0.06 -10.74 16 16 C 0.00 0.02 7.13 -82.88 -0.59 -0.57 16 17 N -0.26 -4.06 11.96 33.35 0.40 -3.67 16 18 N -0.38 -4.63 6.83 33.42 0.23 -4.40 16 19 H 0.44 3.64 8.96 -190.32 -1.71 1.93 16 20 C 0.01 0.07 6.37 -82.40 -0.53 -0.46 16 21 C -0.14 -2.06 5.68 -104.84 -0.60 -2.65 16 22 C -0.04 -0.59 5.30 -27.93 -0.15 -0.74 16 23 C -0.12 -1.33 5.54 -26.80 -0.15 -1.48 16 24 C -0.12 -0.97 5.65 -27.11 -0.15 -1.12 16 25 C -0.11 -0.86 5.63 -26.84 -0.15 -1.01 16 26 C -0.05 -0.40 5.55 -27.80 -0.15 -0.55 16 27 C -0.14 -2.20 4.05 -90.61 -0.37 -2.56 16 28 C -0.18 -2.35 9.62 -26.72 -0.26 -2.61 16 29 C -0.17 -2.31 9.81 -26.72 -0.26 -2.58 16 30 H 0.07 1.13 6.84 -51.93 -0.36 0.78 16 31 H 0.07 1.36 6.86 -51.93 -0.36 1.01 16 32 H 0.05 0.71 7.01 -51.93 -0.36 0.34 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.93 6.64 -51.93 -0.34 0.59 16 35 H 0.38 10.33 6.35 -40.82 -0.26 10.07 16 36 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.40 6.77 8.22 -40.82 -0.34 6.44 16 38 H 0.09 1.46 6.89 -51.93 -0.36 1.11 16 39 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.77 5.66 -51.93 -0.29 0.47 16 42 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.74 6.35 -51.93 -0.33 0.41 16 48 H 0.12 2.04 7.17 -51.93 -0.37 1.66 16 49 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.10 1.21 5.87 -51.93 -0.30 0.91 16 51 H 0.09 1.14 7.42 -51.93 -0.39 0.76 16 52 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -34.31 397.41 -11.18 -45.49 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -9.50 Total: 16.76 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.52 Total: -7.68 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: 0.81 Total: -68.05 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.06 Total: -10.74 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.31 -11.18 -45.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481951166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.485 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds