Wall clock time and date at job start Wed Apr 1 2020 05:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47196 * 2 1 4 4 N 1.46503 * 109.47125 * 300.00003 * 3 2 1 5 5 C 1.36932 * 120.00219 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.38813 * 119.99693 * 180.02562 * 5 4 3 8 8 N 1.31615 * 120.00420 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99717 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47095 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47009 * 299.99937 * 9 7 5 13 13 N 1.46496 * 109.47224 * 239.99753 * 2 1 3 14 14 C 1.34772 * 120.00358 * 183.94575 * 13 2 1 15 15 O 1.21576 * 119.99663 * 5.19319 * 14 13 2 16 16 C 1.47708 * 120.00463 * 185.19170 * 14 13 2 17 17 N 1.32045 * 126.64447 * 359.68916 * 16 14 13 18 18 N 1.28679 * 110.10411 * 179.74107 * 17 16 14 19 19 H 0.96998 * 124.94605 * 179.82191 * 18 17 16 20 20 C 1.34769 * 110.10399 * 0.13203 * 18 17 16 21 21 C 1.35174 * 107.18652 * 0.32481 * 20 18 17 22 22 C 1.50380 * 126.25586 * 178.84682 * 21 20 18 23 23 C 1.53217 * 109.05136 * 27.92111 * 22 21 20 24 24 C 1.52649 * 109.65602 * 271.33642 * 23 22 21 25 25 C 1.52615 * 110.80695 * 61.53833 * 24 23 22 26 26 C 1.50689 * 127.33594 * 180.91295 * 20 18 17 27 27 C 1.53001 * 109.47091 * 119.99656 * 2 1 3 28 28 C 1.53006 * 117.51736 * 348.45456 * 27 2 1 29 29 C 1.53005 * 117.49954 * 57.08423 * 27 2 1 30 30 H 1.09001 * 109.46751 * 299.99887 * 1 2 3 31 31 H 1.08994 * 109.46770 * 60.00541 * 1 2 3 32 32 H 1.09006 * 109.46863 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47329 * 59.99617 * 3 2 1 34 34 H 1.08994 * 109.47246 * 179.97438 * 3 2 1 35 35 H 0.97005 * 119.99369 * 0.02562 * 4 3 2 36 36 H 0.97004 * 119.99789 * 180.02562 * 8 7 5 37 37 H 0.97001 * 119.99662 * 3.93997 * 13 2 1 38 38 H 1.09003 * 109.54162 * 147.79543 * 22 21 20 39 39 H 1.09006 * 109.54116 * 268.04791 * 22 21 20 40 40 H 1.08999 * 109.44006 * 151.28009 * 23 22 21 41 41 H 1.09002 * 109.41201 * 31.38016 * 23 22 21 42 42 H 1.09002 * 109.20915 * 301.20218 * 24 23 22 43 43 H 1.08995 * 109.17214 * 181.86020 * 24 23 22 44 44 H 1.09000 * 109.41163 * 273.51160 * 25 24 23 45 45 H 1.09001 * 109.40600 * 153.73160 * 25 24 23 46 46 H 1.08998 * 109.52497 * 346.40751 * 26 20 18 47 47 H 1.09001 * 109.53224 * 106.54760 * 26 20 18 48 48 H 1.09000 * 115.55170 * 202.75367 * 27 2 1 49 49 H 1.09002 * 117.49846 * 214.96841 * 28 27 2 50 50 H 1.08996 * 117.49950 * 359.97438 * 28 27 2 51 51 H 1.09004 * 117.49693 * 359.97343 * 29 27 2 52 52 H 1.08993 * 117.50150 * 144.99420 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8830 3.4439 -1.4132 6 1 2.5039 3.9688 -0.7023 7 6 1.4198 4.0983 -2.5464 8 7 0.6627 3.4588 -3.4125 9 14 1.8710 5.8868 -2.8421 10 1 3.3477 6.0165 -2.9312 11 1 1.2564 6.3489 -4.1125 12 1 1.3682 6.7165 -1.7178 13 7 2.0184 -0.6906 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1215 -0.5703 -0.4924 16 6 3.8417 -1.4764 -2.6269 17 7 3.1155 -1.8679 -3.6579 18 7 3.8777 -2.3318 -4.5851 19 1 3.5686 -2.6805 -5.4359 20 6 5.1674 -2.2688 -4.1993 21 6 5.1869 -1.7391 -2.9558 22 6 6.4071 -1.5006 -2.1098 23 6 7.6142 -1.2735 -3.0257 24 6 8.2700 -2.6127 -3.3524 25 6 7.2977 -3.5258 -4.0941 26 6 6.3795 -2.6890 -4.9900 27 6 2.0401 -0.7212 1.2493 28 6 1.0222 -1.0407 2.3461 29 6 1.5802 -2.1638 1.4695 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 0.9937 1.6617 -1.8345 36 1 0.3393 3.9161 -4.2045 37 1 1.3899 -1.0090 -1.8629 38 1 6.2519 -0.6202 -1.4861 39 1 6.5878 -2.3698 -1.4773 40 1 8.3354 -0.6296 -2.5224 41 1 7.2841 -0.7964 -3.9485 42 1 8.5797 -3.0959 -2.4257 43 1 9.1464 -2.4392 -3.9767 44 1 6.6953 -4.0766 -3.3718 45 1 7.8591 -4.2301 -4.7081 46 1 6.0664 -3.2840 -5.8479 47 1 6.9137 -1.8041 -5.3358 48 1 3.0518 -0.4623 1.5615 49 1 1.3644 -0.9921 3.3799 50 1 -0.0109 -0.7368 2.1780 51 1 0.9140 -2.5989 0.7245 52 1 2.2894 -2.8539 1.9264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481951166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:58 Heat of formation + Delta-G solvation = 44.057548 kcal Electronic energy + Delta-G solvation = -32102.076926 eV Core-core repulsion = 28102.859287 eV Total energy + Delta-G solvation = -3999.217639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.81423 -41.18884 -38.72409 -38.44912 -36.58624 -35.01791 -33.94609 -33.08513 -31.97810 -31.50668 -30.56313 -27.78989 -26.42247 -25.92163 -25.33548 -25.02282 -23.24218 -22.87471 -21.30094 -20.85485 -20.49224 -19.95545 -19.23397 -18.65638 -18.02740 -17.19426 -17.05538 -16.78045 -16.26828 -16.00594 -15.58063 -15.54101 -15.38103 -15.14424 -14.96218 -14.49976 -14.33868 -14.25378 -14.05581 -13.64320 -13.57431 -13.27250 -13.22935 -12.98362 -12.78138 -12.63664 -12.44864 -12.29786 -12.20336 -12.13577 -12.04585 -11.99487 -11.72878 -11.62923 -11.44843 -11.33781 -11.14672 -11.02557 -10.96597 -10.57969 -10.32032 -9.87642 -9.58321 -8.96745 -7.94948 -5.21958 0.60188 1.13984 1.42801 1.46415 1.52300 1.91578 2.25269 2.50261 2.54830 3.08260 3.36942 3.44404 3.58992 3.66867 3.90466 3.94763 4.01159 4.04631 4.10889 4.18813 4.24148 4.25131 4.33898 4.35644 4.41007 4.52719 4.54487 4.68467 4.78168 4.87542 4.89594 4.91869 4.95879 4.98684 5.01533 5.03223 5.12734 5.15119 5.17854 5.28676 5.30163 5.31464 5.36183 5.42537 5.44229 5.46045 5.50294 5.60907 5.68514 6.16414 6.26637 6.60486 6.93202 7.33644 7.34657 8.08534 8.36613 9.27842 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008235 B = 0.004067 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3399.342452 B = 6882.841593 C = 8901.234612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.208 3.792 3 C 0.150 3.850 4 N -0.730 5.730 5 C -0.246 4.246 6 H 0.065 0.935 7 C -0.069 4.069 8 N -0.964 5.964 9 Si 0.969 3.031 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.693 5.693 14 C 0.604 3.396 15 O -0.554 6.554 16 C -0.036 4.036 17 N -0.274 5.274 18 N -0.364 5.364 19 H 0.459 0.541 20 C 0.028 3.972 21 C -0.166 4.166 22 C -0.038 4.038 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.109 4.109 26 C -0.048 4.048 27 C -0.165 4.165 28 C -0.162 4.162 29 C -0.161 4.161 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.026 0.974 34 H 0.009 0.991 35 H 0.376 0.624 36 H 0.251 0.749 37 H 0.404 0.596 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.112 0.888 51 H 0.097 0.903 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 -20.322 -0.969 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.123 3.877 3 C 0.022 3.978 4 N -0.374 5.374 5 C -0.378 4.378 6 H 0.083 0.917 7 C -0.261 4.261 8 N -0.614 5.614 9 Si 0.798 3.202 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.202 1.202 13 N -0.343 5.343 14 C 0.390 3.610 15 O -0.431 6.431 16 C -0.195 4.195 17 N -0.111 5.111 18 N -0.080 5.080 19 H 0.307 0.693 20 C -0.100 4.100 21 C -0.176 4.176 22 C -0.077 4.077 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.147 4.147 26 C -0.086 4.086 27 C -0.185 4.185 28 C -0.200 4.200 29 C -0.198 4.198 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.027 0.973 35 H 0.210 0.790 36 H 0.059 0.941 37 H 0.239 0.761 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.122 0.878 47 H 0.115 0.885 48 H 0.109 0.891 49 H 0.123 0.877 50 H 0.130 0.870 51 H 0.115 0.885 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.253 -19.961 -0.626 22.010 hybrid contribution 0.116 1.117 -0.889 1.432 sum 9.369 -18.844 -1.515 21.100 Atomic orbital electron populations 1.22063 0.91832 1.03047 1.03328 1.19908 0.94574 0.89631 0.83621 1.21024 0.96047 0.91247 0.89436 1.42345 1.61043 1.09834 1.24132 1.19530 1.24821 0.89032 1.04453 0.91724 1.25450 1.01116 1.02242 0.97322 1.69799 1.40728 1.37514 1.13403 0.85277 0.77441 0.80461 0.76985 1.21149 1.21631 1.20178 1.45798 1.06498 1.58209 1.23811 1.17041 0.82558 0.77076 0.84358 1.90670 1.56629 1.52658 1.43093 1.21857 0.93391 1.08700 0.95574 1.73631 1.23448 1.15425 0.98583 1.43222 1.03944 1.44845 1.15949 0.69267 1.21604 0.87919 1.04564 0.95873 1.20134 0.94217 1.06466 0.96746 1.19885 0.90417 1.01253 0.96119 1.21692 0.95995 0.98788 0.99310 1.21498 0.98436 0.94335 1.01001 1.21508 0.97018 0.97718 0.98489 1.20436 0.89489 1.01593 0.97088 1.22324 0.99583 0.99596 0.96958 1.23259 0.99132 1.01787 0.95774 1.22843 1.03400 0.90562 1.02969 0.89670 0.93189 0.89776 0.95587 0.97339 0.79027 0.94064 0.76055 0.93105 0.90937 0.91550 0.91811 0.91597 0.90117 0.92819 0.88516 0.87791 0.88525 0.89147 0.87708 0.87007 0.88505 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 7.04 71.98 0.51 -4.03 16 2 C 0.21 7.54 0.54 3.61 0.00 7.54 16 3 C 0.15 6.97 5.02 86.38 0.43 7.40 16 4 N -0.73 -39.78 5.18 -343.45 -1.78 -41.56 16 5 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 6 H 0.06 3.83 7.83 -2.91 -0.02 3.81 16 7 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 8 N -0.96 -60.45 13.06 21.65 0.28 -60.17 16 9 Si 0.97 48.36 29.55 68.60 2.03 50.39 16 10 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 N -0.69 -25.75 4.71 -425.89 -2.00 -27.76 16 14 C 0.60 24.47 7.23 86.75 0.63 25.10 16 15 O -0.55 -24.59 12.06 -3.96 -0.05 -24.64 16 16 C -0.04 -1.32 7.13 42.28 0.30 -1.01 16 17 N -0.27 -8.83 11.96 -48.41 -0.58 -9.41 16 18 N -0.36 -8.47 6.83 -48.19 -0.33 -8.80 16 19 H 0.46 6.66 8.96 -219.89 -1.97 4.69 16 20 C 0.03 0.63 6.37 41.40 0.26 0.90 16 21 C -0.17 -5.11 5.68 -20.01 -0.11 -5.23 16 22 C -0.04 -1.10 5.30 29.82 0.16 -0.95 16 23 C -0.12 -2.53 5.54 30.55 0.17 -2.36 16 24 C -0.12 -1.62 5.65 30.35 0.17 -1.45 16 25 C -0.11 -1.34 5.63 30.52 0.17 -1.17 16 26 C -0.05 -0.64 5.55 29.90 0.17 -0.47 16 27 C -0.16 -5.25 4.05 -10.79 -0.04 -5.29 16 28 C -0.16 -3.88 9.62 30.60 0.29 -3.58 16 29 C -0.16 -4.05 9.81 30.60 0.30 -3.75 16 30 H 0.08 2.47 6.84 -2.39 -0.02 2.46 16 31 H 0.05 1.83 6.86 -2.39 -0.02 1.81 16 32 H 0.08 2.09 7.01 -2.38 -0.02 2.08 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.01 0.45 6.64 -2.39 -0.02 0.44 16 35 H 0.38 21.18 6.35 -92.70 -0.59 20.59 16 36 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.40 14.22 8.22 -92.71 -0.76 13.46 16 38 H 0.05 1.83 6.89 -2.39 -0.02 1.81 16 39 H 0.07 1.96 7.83 -2.38 -0.02 1.94 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.38 5.66 -2.39 -0.01 1.37 16 42 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 0.83 7.79 -2.39 -0.02 0.81 16 45 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 1.28 6.35 -2.39 -0.02 1.27 16 48 H 0.09 3.36 7.17 -2.39 -0.02 3.35 16 49 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.11 2.42 5.87 -2.39 -0.01 2.41 16 51 H 0.10 2.30 7.42 -2.38 -0.02 2.29 16 52 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -78.12 397.41 -0.06 -78.17 By element: Atomic # 1 Polarization: 52.09 SS G_CDS: -2.35 Total: 49.75 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 4.72 Total: -5.97 kcal Atomic # 7 Polarization: -143.29 SS G_CDS: -4.41 Total: -147.70 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -78.12 -0.06 -78.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481951166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.232 kcal (2) G-P(sol) polarization free energy of solvation -78.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds