Wall clock time and date at job start Wed Apr 1 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46667 * 2 1 4 4 N 1.46503 * 109.46740 * 183.37094 * 3 2 1 5 5 C 1.34778 * 120.00582 * 85.68045 * 4 3 2 6 6 O 1.21275 * 120.00104 * 180.02562 * 5 4 3 7 7 C 1.50698 * 119.99477 * 359.97438 * 5 4 3 8 8 H 1.09005 * 115.55212 * 34.41861 * 7 5 4 9 9 C 1.53008 * 117.49553 * 248.74823 * 7 5 4 10 10 C 1.52998 * 117.49827 * 180.09177 * 7 5 4 11 11 H 1.09001 * 117.49716 * 359.97438 * 10 7 5 12 12 C 1.50700 * 117.50187 * 214.97842 * 10 7 5 13 13 C 1.34664 * 126.58887 * 324.68604 * 12 10 7 14 14 N 1.34128 * 108.02398 * 179.87170 * 13 12 10 15 15 C 1.30501 * 109.25303 * 0.39436 * 14 13 12 16 16 N 1.35049 * 108.69945 * 359.75804 * 15 14 13 17 17 C 1.46500 * 126.39790 * 179.97438 * 16 15 14 18 18 C 1.46501 * 119.99624 * 265.40296 * 4 3 2 19 19 H 1.09002 * 110.88855 * 179.24243 * 18 4 3 20 20 C 1.55150 * 111.00633 * 55.35763 * 18 4 3 21 21 C 1.54321 * 102.94501 * 277.42621 * 20 18 4 22 22 N 1.47021 * 107.26884 * 337.80714 * 21 20 18 23 23 C 1.36941 * 125.64960 * 178.98361 * 22 21 20 24 24 H 1.07990 * 120.00238 * 174.99388 * 23 22 21 25 25 C 1.38814 * 119.99684 * 354.98931 * 23 22 21 26 26 N 1.31620 * 120.00056 * 7.55703 * 25 23 22 27 27 Si 1.86799 * 120.00008 * 187.55107 * 25 23 22 28 28 H 1.48505 * 109.46878 * 94.98749 * 27 25 23 29 29 H 1.48503 * 109.47469 * 214.98597 * 27 25 23 30 30 H 1.48494 * 109.47284 * 334.98903 * 27 25 23 31 31 C 1.47420 * 108.70384 * 358.94066 * 22 21 20 32 32 H 1.08996 * 109.46985 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47223 * 300.00217 * 1 2 3 34 34 H 1.09009 * 109.46823 * 60.00455 * 1 2 3 35 35 H 1.08991 * 109.47397 * 239.99619 * 2 1 3 36 36 H 1.09003 * 109.46969 * 119.99137 * 2 1 3 37 37 H 1.08992 * 109.47982 * 63.36993 * 3 2 1 38 38 H 1.09008 * 109.47059 * 303.36317 * 3 2 1 39 39 H 1.08991 * 117.50143 * 359.97438 * 9 7 5 40 40 H 1.09002 * 117.49377 * 145.00013 * 9 7 5 41 41 H 1.08005 * 125.99281 * 0.02810 * 13 12 10 42 42 H 1.07998 * 125.65344 * 179.77201 * 15 14 13 43 43 H 1.09005 * 109.47253 * 269.99845 * 17 16 15 44 44 H 1.09003 * 109.46799 * 29.99800 * 17 16 15 45 45 H 1.08997 * 109.47373 * 150.00067 * 17 16 15 46 46 H 1.09001 * 110.72371 * 35.79220 * 20 18 4 47 47 H 1.09001 * 110.72173 * 158.88611 * 20 18 4 48 48 H 1.09008 * 109.88037 * 97.22165 * 21 20 18 49 49 H 1.08999 * 109.88682 * 218.23590 * 21 20 18 50 50 H 0.97001 * 119.99728 * 179.97438 * 26 25 23 51 51 H 1.08998 * 110.36454 * 265.28865 * 31 22 21 52 52 H 1.09002 * 110.36768 * 142.96907 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5027 1.4434 -0.0812 5 6 4.1111 1.3786 -1.2821 6 8 5.3220 1.3789 -1.3492 7 6 3.2866 1.3049 -2.5414 8 1 2.3480 1.8589 -2.5220 9 6 3.3170 -0.0061 -3.3299 10 6 4.0360 1.2312 -3.8732 11 1 5.1255 1.2366 -3.8385 12 6 3.4200 1.9298 -5.0579 13 6 2.1059 2.0405 -5.3303 14 7 1.9754 2.7356 -6.4701 15 6 3.1592 3.0525 -6.9187 16 7 4.0889 2.5686 -6.0670 17 6 5.5418 2.7020 -6.1987 18 6 4.3041 1.5207 1.1427 19 1 5.3692 1.4974 0.9119 20 6 3.9239 0.3851 2.1291 21 6 2.6765 0.9493 2.8414 22 7 2.7195 2.4124 2.7034 23 6 1.7807 3.2871 3.1819 24 1 1.9431 4.3516 3.0998 25 6 0.6204 2.8054 3.7723 26 7 0.4875 1.5172 4.0074 27 14 -0.7522 3.9855 4.2333 28 1 -1.7525 4.0338 3.1368 29 1 -1.4081 3.5187 5.4813 30 1 -0.1876 5.3419 4.4484 31 6 3.9410 2.7819 1.9655 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8901 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 1.7268 1.9387 0.9185 38 1 1.6281 1.9735 -0.8584 39 1 3.9336 -0.8148 -2.9380 40 1 2.3984 -0.3144 -3.8292 41 1 1.2983 1.6420 -4.7341 42 1 3.3619 3.6096 -7.8214 43 1 5.9344 1.8574 -6.7650 44 1 5.7756 3.6298 -6.7208 45 1 5.9965 2.7180 -5.2082 46 1 3.6788 -0.5293 1.5888 47 1 4.7299 0.2065 2.8408 48 1 1.7734 0.5590 2.3721 49 1 2.6951 0.6734 3.8958 50 1 -0.3231 1.1807 4.4203 51 1 4.7446 3.0260 2.6602 52 1 3.7433 3.6238 1.3019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567687967.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:57 Heat of formation + Delta-G solvation = 89.706829 kcal Electronic energy + Delta-G solvation = -32073.508193 eV Core-core repulsion = 28076.270055 eV Total energy + Delta-G solvation = -3997.238138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.29751 -40.20214 -38.07282 -36.31729 -34.88009 -34.21014 -32.87495 -31.72458 -29.62825 -29.26400 -27.61677 -27.21400 -25.66126 -24.92006 -23.87696 -23.36968 -21.58835 -21.27618 -20.40823 -20.09602 -19.55067 -18.34793 -17.75176 -17.02034 -16.84594 -16.05611 -15.89517 -15.01925 -14.79581 -14.73254 -14.42336 -14.18726 -13.93226 -13.77014 -13.71152 -13.28219 -13.21969 -12.99244 -12.80537 -12.66681 -12.20141 -12.01476 -11.99251 -11.91461 -11.54425 -11.24449 -11.11809 -11.05957 -10.95394 -10.92086 -10.69295 -10.53665 -10.26926 -10.15699 -10.11172 -10.07492 -9.93367 -9.72170 -9.70257 -9.35122 -8.65402 -8.37380 -8.19522 -6.85082 -5.78908 -3.11793 1.73603 2.52391 2.69727 2.99536 3.30201 3.36196 3.43204 3.43926 3.91964 4.27874 4.43063 4.44755 4.52390 4.63837 4.71430 4.81753 4.92035 4.98163 5.11295 5.15875 5.32966 5.40576 5.40922 5.47802 5.49216 5.56244 5.58539 5.68630 5.72607 5.86667 5.87703 5.88687 5.98793 6.16894 6.22752 6.23210 6.30553 6.36533 6.47966 6.52722 6.55464 6.60640 6.69123 6.74724 6.85137 6.98652 7.15811 7.51292 7.57850 7.78255 7.86193 7.90547 8.18117 8.47276 9.15210 9.74533 10.40424 11.31934 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.003018 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.859323 B = 9275.735045 C = 9892.708905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.085 3.915 4 N -0.576 5.576 5 C 0.541 3.459 6 O -0.560 6.560 7 C -0.165 4.165 8 H 0.129 0.871 9 C -0.130 4.130 10 C -0.060 4.060 11 H 0.122 0.878 12 C 0.013 3.987 13 C -0.024 4.024 14 N -0.492 5.492 15 C 0.176 3.824 16 N -0.458 5.458 17 C 0.069 3.931 18 C 0.123 3.877 19 H 0.098 0.902 20 C -0.157 4.157 21 C 0.166 3.834 22 N -0.601 5.601 23 C -0.233 4.233 24 H 0.077 0.923 25 C -0.002 4.002 26 N -0.915 5.915 27 Si 0.906 3.094 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.282 1.282 31 C 0.124 3.876 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.168 0.832 42 H 0.205 0.795 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.252 0.748 51 H 0.030 0.970 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.306 -3.025 -17.959 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C -0.037 4.037 4 N -0.305 5.305 5 C 0.329 3.671 6 O -0.440 6.440 7 C -0.186 4.186 8 H 0.147 0.853 9 C -0.168 4.168 10 C -0.080 4.080 11 H 0.140 0.860 12 C -0.101 4.101 13 C -0.172 4.172 14 N -0.209 5.209 15 C -0.105 4.105 16 N -0.141 5.141 17 C -0.073 4.073 18 C 0.019 3.981 19 H 0.116 0.884 20 C -0.197 4.197 21 C 0.042 3.958 22 N -0.328 5.328 23 C -0.361 4.361 24 H 0.095 0.905 25 C -0.198 4.198 26 N -0.562 5.562 27 Si 0.736 3.264 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.207 1.207 31 C -0.003 4.003 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.155 0.845 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.186 0.814 42 H 0.221 0.779 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.047 0.953 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.137 -2.789 -18.239 19.783 hybrid contribution -0.024 0.496 0.725 0.878 sum 7.113 -2.293 -17.514 19.042 Atomic orbital electron populations 1.21656 0.95343 1.01180 1.02292 1.22008 0.96267 0.97313 1.01855 1.22261 0.77849 0.97403 1.06193 1.47730 1.07666 1.70236 1.04840 1.19511 0.87408 0.76020 0.84129 1.90623 1.14233 1.52085 1.87036 1.22430 1.01850 1.04077 0.90267 0.85314 1.23104 1.02686 0.90430 1.00556 1.20131 0.98866 1.00250 0.88711 0.86040 1.20303 0.92565 1.04146 0.93093 1.22013 0.94168 1.04278 0.96742 1.70282 1.23574 1.15610 1.11455 1.24913 0.83309 1.03911 0.98394 1.45206 1.07927 1.41559 1.19363 1.22080 0.77126 1.03496 1.04611 1.22244 0.95163 0.97182 0.83523 0.88397 1.23291 1.00922 0.97471 0.97967 1.21407 0.93075 0.83194 0.98128 1.44595 1.21548 1.02490 1.64178 1.19029 0.95684 0.88520 1.32835 0.90513 1.24759 0.98097 0.96092 1.00897 1.69977 1.27196 1.11273 1.47718 0.86195 0.82512 0.80018 0.77646 1.21508 1.21828 1.20737 1.21914 0.90535 0.94590 0.93227 0.93269 0.91241 0.93504 0.93197 0.90720 0.84472 0.92154 0.87630 0.87280 0.81434 0.77880 0.90422 0.89353 0.89269 0.91686 0.91539 0.91847 0.94260 0.93718 0.95276 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.14 -2.07 5.34 -26.73 -0.14 -2.21 16 3 C 0.09 1.43 4.20 -4.04 -0.02 1.41 16 4 N -0.58 -9.67 2.52 -163.68 -0.41 -10.08 16 5 C 0.54 8.71 7.43 -10.99 -0.08 8.63 16 6 O -0.56 -10.34 15.63 5.56 0.09 -10.25 16 7 C -0.16 -2.09 4.48 -91.77 -0.41 -2.50 16 8 H 0.13 1.60 6.35 -51.93 -0.33 1.27 16 9 C -0.13 -1.35 9.63 -26.69 -0.26 -1.60 16 10 C -0.06 -0.68 5.53 -91.73 -0.51 -1.19 16 11 H 0.12 1.44 6.93 -51.93 -0.36 1.08 16 12 C 0.01 0.16 6.63 -81.60 -0.54 -0.39 16 13 C -0.02 -0.30 10.94 -17.81 -0.19 -0.50 16 14 N -0.49 -6.50 11.25 -14.66 -0.16 -6.66 16 15 C 0.18 1.79 12.56 -90.37 -1.14 0.65 16 16 N -0.46 -4.49 3.15 -121.36 -0.38 -4.87 16 17 C 0.07 0.42 10.96 59.85 0.66 1.07 16 18 C 0.12 2.21 3.67 -65.79 -0.24 1.97 16 19 H 0.10 1.75 7.01 -51.93 -0.36 1.39 16 20 C -0.16 -2.85 5.98 -24.90 -0.15 -3.00 16 21 C 0.17 3.68 4.16 -3.07 -0.01 3.67 16 22 N -0.60 -14.05 1.92 -170.08 -0.33 -14.38 16 23 C -0.23 -6.03 9.92 -15.06 -0.15 -6.18 16 24 H 0.08 1.98 7.84 -52.49 -0.41 1.56 16 25 C 0.00 -0.04 5.48 -17.43 -0.10 -0.14 16 26 N -0.91 -24.68 10.37 55.49 0.58 -24.10 16 27 Si 0.91 21.06 29.56 -169.99 -5.02 16.03 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 31 C 0.12 2.51 6.56 -2.53 -0.02 2.49 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.05 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.07 1.26 4.67 -51.93 -0.24 1.02 16 37 H 0.14 2.86 4.33 -51.93 -0.23 2.63 16 38 H 0.06 0.92 6.19 -51.92 -0.32 0.60 16 39 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.11 0.97 7.94 -51.93 -0.41 0.56 16 41 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.58 7.38 -51.93 -0.38 0.20 16 46 H 0.06 1.11 6.70 -51.93 -0.35 0.76 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.06 1.47 4.35 -51.92 -0.23 1.24 16 49 H 0.04 1.00 7.59 -51.93 -0.39 0.60 16 50 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 51 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 401.76 15.07 6.05 6.05 Total: -1.00 -31.13 401.76 -10.73 -41.85 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -8.20 Total: 6.00 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.93 Total: 0.40 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.71 Total: -60.09 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.13 -10.73 -41.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567687967.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.558 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds