Wall clock time and date at job start Wed Apr 1 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 H 1.09007 * 109.47200 * 305.00115 * 3 2 1 5 5 C 1.52995 * 109.47524 * 185.00123 * 3 2 1 6 6 N 1.46499 * 109.47155 * 64.99979 * 3 2 1 7 7 C 1.34784 * 119.99971 * 205.00183 * 6 3 2 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 6 3 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 3 10 10 N 1.46904 * 109.46798 * 180.02562 * 9 7 6 11 11 C 1.46961 * 110.99953 * 293.79924 * 10 9 7 12 12 C 1.53049 * 109.36460 * 176.81258 * 11 10 9 13 13 N 1.46961 * 109.36452 * 58.40013 * 12 11 10 14 14 C 1.38817 * 111.00123 * 176.81137 * 13 12 11 15 15 C 1.39796 * 119.58727 * 303.80428 * 14 13 12 16 16 C 1.38596 * 119.49630 * 179.97438 * 15 14 13 17 17 C 1.38385 * 118.67922 * 359.97438 * 16 15 14 18 18 C 1.40559 * 119.14984 * 0.02562 * 17 16 15 19 19 C 1.41311 * 119.78792 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99807 * 0.02562 * 19 18 17 21 21 C 1.40020 * 120.00559 * 179.97438 * 19 18 17 22 22 N 1.30746 * 119.99811 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00495 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47088 * 90.00272 * 23 21 19 25 25 H 1.48501 * 109.47276 * 210.00024 * 23 21 19 26 26 H 1.48497 * 109.46914 * 330.00110 * 23 21 19 27 27 N 1.31955 * 119.58520 * 123.52869 * 14 13 12 28 28 C 1.46961 * 110.88120 * 300.68012 * 13 12 11 29 29 C 1.46961 * 110.99957 * 169.99932 * 10 9 7 30 30 H 1.09001 * 109.46785 * 299.99862 * 1 2 3 31 31 H 1.09002 * 109.47226 * 59.99951 * 1 2 3 32 32 H 1.09004 * 109.46719 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47308 * 240.00101 * 2 1 3 34 34 H 1.08995 * 109.47507 * 120.00282 * 2 1 3 35 35 H 1.09005 * 109.47314 * 59.99924 * 5 3 2 36 36 H 1.09001 * 109.47831 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47227 * 299.99947 * 5 3 2 38 38 H 0.96999 * 119.99984 * 25.00030 * 6 3 2 39 39 H 1.09005 * 109.47403 * 300.00056 * 9 7 6 40 40 H 1.09002 * 109.47422 * 60.00295 * 9 7 6 41 41 H 1.09003 * 109.48745 * 296.78126 * 11 10 9 42 42 H 1.08997 * 109.48872 * 56.84604 * 11 10 9 43 43 H 1.09004 * 109.48732 * 298.43936 * 12 11 10 44 44 H 1.08992 * 109.50640 * 178.37972 * 12 11 10 45 45 H 1.08007 * 120.25535 * 359.97438 * 15 14 13 46 46 H 1.07991 * 120.66008 * 180.02562 * 16 15 14 47 47 H 1.08000 * 120.42882 * 179.97438 * 17 16 15 48 48 H 0.97001 * 120.00172 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.48930 * 299.35639 * 28 13 12 50 50 H 1.09002 * 109.50667 * 179.29771 * 28 13 12 51 51 H 1.08995 * 109.48818 * 303.15768 * 29 10 9 52 52 H 1.09004 * 109.48446 * 63.22482 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5648 1.4444 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5256 3.4385 1.2995 8 8 1.7371 4.1032 0.3075 9 6 1.1264 4.1121 2.5871 10 7 1.0574 5.5647 2.3788 11 6 2.3883 6.1199 2.0954 12 6 2.2624 7.6176 1.8068 13 7 1.6509 8.2871 2.9634 14 6 1.5858 9.6597 2.7666 15 6 2.7545 10.3727 2.4837 16 6 2.6871 11.7430 2.2871 17 6 1.4553 12.3671 2.3770 18 6 0.3161 11.5954 2.6643 19 6 -0.9484 12.2188 2.7598 20 1 -1.0373 13.2850 2.6118 21 6 -2.0862 11.4544 3.0452 22 7 -1.9787 10.1637 3.2238 23 14 -3.7579 12.2785 3.1707 24 1 -4.4056 12.2902 1.8345 25 1 -4.6098 11.5269 4.1271 26 1 -3.5873 13.6735 3.6504 27 7 0.4206 10.2742 2.8434 28 6 0.3201 7.7319 3.2467 29 6 0.4459 6.2341 3.5354 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8532 0.9571 -1.0572 36 1 3.9282 2.4720 -0.1262 37 1 3.9994 0.9054 0.7160 38 1 1.4871 1.5661 2.0462 39 1 0.1501 3.7438 2.9024 40 1 1.8647 3.8899 3.3576 41 1 3.0365 5.9691 2.9587 42 1 2.8149 5.6169 1.2276 43 1 1.6361 7.7670 0.9272 44 1 3.2515 8.0375 1.6246 45 1 3.7027 9.8597 2.4190 46 1 3.5781 12.3122 2.0672 47 1 1.3703 13.4335 2.2292 48 1 -2.7669 9.6341 3.4219 49 1 -0.3282 7.8826 2.3834 50 1 -0.1069 8.2348 4.1144 51 1 -0.5434 5.8144 3.7173 52 1 1.0722 6.0847 4.4149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645612262.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:01 Heat of formation + Delta-G solvation = 15.846299 kcal Electronic energy + Delta-G solvation = -30855.969287 eV Core-core repulsion = 26855.528316 eV Total energy + Delta-G solvation = -4000.440971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.19106 -39.14435 -37.64773 -36.52228 -34.74300 -33.33796 -32.61586 -30.82058 -30.40883 -30.01968 -29.61558 -27.72525 -25.63750 -24.50931 -23.79596 -23.19803 -21.38871 -21.06361 -20.63210 -20.54526 -19.16264 -17.48101 -17.12930 -16.62763 -16.17052 -15.56789 -15.07404 -14.69298 -14.59422 -14.57924 -14.42914 -14.24308 -14.13888 -13.86337 -13.74526 -13.70243 -13.28692 -12.92129 -12.75904 -12.64214 -12.17805 -12.09725 -11.99442 -11.78279 -11.57827 -11.46251 -11.44993 -11.14025 -11.04233 -11.00953 -10.78486 -10.67849 -10.63108 -10.40324 -10.31860 -9.95690 -9.63175 -9.37752 -9.23306 -8.64749 -8.11207 -7.96168 -7.54523 -6.88844 -6.37071 -4.47455 2.62205 2.78466 2.92482 3.06748 3.11030 3.13990 3.25723 3.97564 4.10127 4.33526 4.57686 4.63468 4.70044 4.74432 4.85198 5.08811 5.11855 5.18975 5.23218 5.26934 5.35636 5.42295 5.52935 5.54906 5.57040 5.75358 5.76076 5.78238 5.85569 5.86230 5.95120 5.96965 6.06053 6.19719 6.25613 6.36750 6.38696 6.59782 6.68529 6.71122 6.84880 6.94601 7.10325 7.19094 7.19468 7.27086 7.41745 7.54789 7.75680 7.84644 7.90420 8.21313 8.23740 8.43230 8.74988 9.04255 10.13937 10.34964 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.002421 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.215342 B =11564.176726 C =12864.600458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.164 4.164 6 N -0.732 5.732 7 C 0.514 3.486 8 O -0.515 6.515 9 C 0.036 3.964 10 N -0.521 5.521 11 C 0.058 3.942 12 C 0.071 3.929 13 N -0.485 5.485 14 C 0.323 3.677 15 C -0.321 4.321 16 C -0.045 4.045 17 C -0.296 4.296 18 C 0.275 3.725 19 C -0.432 4.432 20 H 0.082 0.918 21 C 0.072 3.928 22 N -0.715 5.715 23 Si 0.906 3.094 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.263 1.263 27 N -0.506 5.506 28 C 0.084 3.916 29 C 0.055 3.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.397 0.603 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.033 0.967 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.270 0.730 49 H 0.061 0.939 50 H 0.096 0.904 51 H 0.076 0.924 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 -21.066 -1.333 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.106 0.894 5 C -0.222 4.222 6 N -0.386 5.386 7 C 0.300 3.700 8 O -0.389 6.389 9 C -0.095 4.095 10 N -0.246 5.246 11 C -0.070 4.070 12 C -0.056 4.056 13 N -0.204 5.204 14 C 0.085 3.915 15 C -0.346 4.346 16 C -0.070 4.070 17 C -0.319 4.319 18 C 0.148 3.852 19 C -0.464 4.464 20 H 0.100 0.900 21 C -0.153 4.153 22 N -0.336 5.336 23 Si 0.730 3.270 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.187 1.187 27 N -0.224 5.224 28 C -0.043 4.043 29 C -0.073 4.073 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.231 0.769 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.114 0.886 51 H 0.094 0.906 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.846 -21.249 -1.843 21.673 hybrid contribution 0.057 0.505 0.436 0.670 sum 3.902 -20.744 -1.407 21.155 Atomic orbital electron populations 1.21778 0.95236 1.01614 1.02464 1.21830 0.96631 0.95476 1.02895 1.20962 0.94790 0.92878 0.87735 0.89395 1.22181 0.95503 1.02751 1.01783 1.46110 1.71958 1.07082 1.13454 1.20681 0.76716 0.81827 0.90781 1.90695 1.48170 1.63582 1.36457 1.21943 1.02591 0.90815 0.94157 1.61889 1.22882 1.00455 1.39391 1.22331 0.88721 0.95163 1.00796 1.22078 0.99793 0.92136 0.91588 1.59375 1.23019 1.02055 1.35935 1.19796 0.90458 0.88741 0.92477 1.20689 0.96890 0.94662 1.22352 1.20689 0.96231 0.93860 0.96191 1.21628 0.93887 0.99080 1.17331 1.18335 0.92330 0.87060 0.87428 1.19561 0.90485 0.95262 1.41043 0.89973 1.26022 1.00850 0.94763 0.93693 1.70115 1.29967 1.05642 1.27909 0.86363 0.81455 0.80357 0.78818 1.19541 1.20211 1.18682 1.68655 1.21220 1.10569 1.21960 1.21832 0.88816 0.89834 1.03820 1.22413 0.98595 0.95981 0.90293 0.92473 0.92489 0.92635 0.90512 0.91512 0.91783 0.91924 0.92625 0.76950 0.88074 0.92207 0.94903 0.88933 0.93569 0.90277 0.88810 0.88674 0.88556 0.91850 0.92110 0.88588 0.90554 0.94651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.80 37.16 0.36 -0.56 16 2 C -0.13 -0.72 5.47 -26.73 -0.15 -0.86 16 3 C 0.14 1.13 2.57 -67.93 -0.17 0.95 16 4 H 0.09 0.92 7.58 -51.92 -0.39 0.52 16 5 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 6 N -0.73 -6.02 4.53 -53.81 -0.24 -6.26 16 7 C 0.51 6.18 7.50 -10.98 -0.08 6.10 16 8 O -0.52 -8.45 13.99 5.56 0.08 -8.37 16 9 C 0.04 0.41 5.45 -4.98 -0.03 0.38 16 10 N -0.52 -8.12 4.45 -235.90 -1.05 -9.17 16 11 C 0.06 0.94 5.26 -3.77 -0.02 0.92 16 12 C 0.07 1.38 5.37 -3.77 -0.02 1.36 16 13 N -0.48 -10.51 4.73 -173.00 -0.82 -11.32 16 14 C 0.32 8.10 6.41 -155.33 -1.00 7.11 16 15 C -0.32 -7.62 9.23 -38.87 -0.36 -7.98 16 16 C -0.05 -1.06 10.15 -39.39 -0.40 -1.46 16 17 C -0.30 -7.54 9.83 -38.65 -0.38 -7.92 16 18 C 0.27 7.65 6.55 -85.00 -0.56 7.09 16 19 C -0.43 -11.64 9.14 -37.75 -0.34 -11.98 16 20 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 21 C 0.07 1.82 5.50 -17.35 -0.10 1.72 16 22 N -0.71 -18.47 11.46 55.55 0.64 -17.83 16 23 Si 0.91 18.69 29.56 -169.99 -5.02 13.67 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 27 N -0.51 -13.89 6.18 -10.33 -0.06 -13.95 16 28 C 0.08 1.76 4.78 -3.77 -0.02 1.74 16 29 C 0.05 0.88 5.61 -3.77 -0.02 0.86 16 30 H 0.06 0.36 7.75 -51.93 -0.40 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 2.15 8.60 -40.82 -0.35 1.80 16 39 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 40 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 1.53 5.84 -51.93 -0.30 1.22 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.08 1.46 6.77 -51.93 -0.35 1.11 16 45 H 0.09 2.02 7.16 -52.48 -0.38 1.65 16 46 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 47 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 48 H 0.27 6.37 8.29 -40.82 -0.34 6.03 16 49 H 0.06 1.46 8.04 -51.93 -0.42 1.04 16 50 H 0.10 2.21 7.82 -51.93 -0.41 1.81 16 51 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 52 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 411.77 15.07 6.21 6.21 Total: -1.00 -31.63 411.77 -12.08 -43.71 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.88 Total: 6.77 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.92 Total: -3.44 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -1.54 Total: -58.54 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.63 -12.08 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645612262.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.559 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds