Wall clock time and date at job start Wed Apr 1 2020 04:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 H 1.09007 * 109.47200 * 305.00115 * 3 2 1 5 5 C 1.52995 * 109.47524 * 185.00123 * 3 2 1 6 6 N 1.46499 * 109.47155 * 64.99979 * 3 2 1 7 7 C 1.34784 * 119.99971 * 205.00183 * 6 3 2 8 8 O 1.21274 * 119.99897 * 359.72827 * 7 6 3 9 9 C 1.50695 * 119.99635 * 179.97438 * 7 6 3 10 10 N 1.46904 * 109.46798 * 180.02562 * 9 7 6 11 11 C 1.46961 * 110.99953 * 293.79924 * 10 9 7 12 12 C 1.53049 * 109.36460 * 176.81258 * 11 10 9 13 13 N 1.46961 * 109.36452 * 58.40013 * 12 11 10 14 14 C 1.38817 * 111.00123 * 176.81137 * 13 12 11 15 15 C 1.39796 * 119.58727 * 303.80428 * 14 13 12 16 16 C 1.38596 * 119.49630 * 179.97438 * 15 14 13 17 17 C 1.38385 * 118.67922 * 359.97438 * 16 15 14 18 18 C 1.40559 * 119.14984 * 0.02562 * 17 16 15 19 19 C 1.41311 * 119.78792 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99807 * 0.02562 * 19 18 17 21 21 C 1.40020 * 120.00559 * 179.97438 * 19 18 17 22 22 N 1.30746 * 119.99811 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00495 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47088 * 90.00272 * 23 21 19 25 25 H 1.48501 * 109.47276 * 210.00024 * 23 21 19 26 26 H 1.48497 * 109.46914 * 330.00110 * 23 21 19 27 27 N 1.31955 * 119.58520 * 123.52869 * 14 13 12 28 28 C 1.46961 * 110.88120 * 300.68012 * 13 12 11 29 29 C 1.46961 * 110.99957 * 169.99932 * 10 9 7 30 30 H 1.09001 * 109.46785 * 299.99862 * 1 2 3 31 31 H 1.09002 * 109.47226 * 59.99951 * 1 2 3 32 32 H 1.09004 * 109.46719 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47308 * 240.00101 * 2 1 3 34 34 H 1.08995 * 109.47507 * 120.00282 * 2 1 3 35 35 H 1.09005 * 109.47314 * 59.99924 * 5 3 2 36 36 H 1.09001 * 109.47831 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47227 * 299.99947 * 5 3 2 38 38 H 0.96999 * 119.99984 * 25.00030 * 6 3 2 39 39 H 1.09005 * 109.47403 * 300.00056 * 9 7 6 40 40 H 1.09002 * 109.47422 * 60.00295 * 9 7 6 41 41 H 1.09003 * 109.48745 * 296.78126 * 11 10 9 42 42 H 1.08997 * 109.48872 * 56.84604 * 11 10 9 43 43 H 1.09004 * 109.48732 * 298.43936 * 12 11 10 44 44 H 1.08992 * 109.50640 * 178.37972 * 12 11 10 45 45 H 1.08007 * 120.25535 * 359.97438 * 15 14 13 46 46 H 1.07991 * 120.66008 * 180.02562 * 16 15 14 47 47 H 1.08000 * 120.42882 * 179.97438 * 17 16 15 48 48 H 0.97001 * 120.00172 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.48930 * 299.35639 * 28 13 12 50 50 H 1.09002 * 109.50667 * 179.29771 * 28 13 12 51 51 H 1.08995 * 109.48818 * 303.15768 * 29 10 9 52 52 H 1.09004 * 109.48446 * 63.22482 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5648 1.4444 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5256 3.4385 1.2995 8 8 1.7371 4.1032 0.3075 9 6 1.1264 4.1121 2.5871 10 7 1.0574 5.5647 2.3788 11 6 2.3883 6.1199 2.0954 12 6 2.2624 7.6176 1.8068 13 7 1.6509 8.2871 2.9634 14 6 1.5858 9.6597 2.7666 15 6 2.7545 10.3727 2.4837 16 6 2.6871 11.7430 2.2871 17 6 1.4553 12.3671 2.3770 18 6 0.3161 11.5954 2.6643 19 6 -0.9484 12.2188 2.7598 20 1 -1.0373 13.2850 2.6118 21 6 -2.0862 11.4544 3.0452 22 7 -1.9787 10.1637 3.2238 23 14 -3.7579 12.2785 3.1707 24 1 -4.4056 12.2902 1.8345 25 1 -4.6098 11.5269 4.1271 26 1 -3.5873 13.6735 3.6504 27 7 0.4206 10.2742 2.8434 28 6 0.3201 7.7319 3.2467 29 6 0.4459 6.2341 3.5354 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8532 0.9571 -1.0572 36 1 3.9282 2.4720 -0.1262 37 1 3.9994 0.9054 0.7160 38 1 1.4871 1.5661 2.0462 39 1 0.1501 3.7438 2.9024 40 1 1.8647 3.8899 3.3576 41 1 3.0365 5.9691 2.9587 42 1 2.8149 5.6169 1.2276 43 1 1.6361 7.7670 0.9272 44 1 3.2515 8.0375 1.6246 45 1 3.7027 9.8597 2.4190 46 1 3.5781 12.3122 2.0672 47 1 1.3703 13.4335 2.2292 48 1 -2.7669 9.6341 3.4219 49 1 -0.3282 7.8826 2.3834 50 1 -0.1069 8.2348 4.1144 51 1 -0.5434 5.8144 3.7173 52 1 1.0722 6.0847 4.4149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645612262.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:59 Heat of formation + Delta-G solvation = -4.994027 kcal Electronic energy + Delta-G solvation = -30856.872991 eV Core-core repulsion = 26855.528316 eV Total energy + Delta-G solvation = -4001.344675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.31344 -40.65815 -39.15561 -37.43365 -36.26290 -35.18682 -33.37259 -32.57011 -31.69725 -31.56800 -30.75619 -29.10002 -27.45355 -25.76770 -24.75511 -24.53136 -23.01498 -22.47614 -21.87716 -21.41822 -20.69861 -19.37750 -18.15823 -17.91462 -17.32029 -16.69574 -16.55570 -16.38009 -16.31306 -15.97752 -15.60326 -15.45184 -15.39211 -14.92239 -14.82652 -14.61098 -14.52971 -14.32643 -14.12442 -13.89393 -13.66328 -13.34613 -12.99151 -12.91926 -12.78818 -12.72157 -12.64015 -12.58781 -12.40638 -12.26474 -12.17184 -11.97050 -11.93386 -11.83270 -11.75673 -11.60699 -11.25910 -10.70095 -10.48538 -10.02548 -9.92641 -9.50189 -9.27349 -8.79483 -8.27341 -6.49373 0.88595 1.18534 1.40500 1.52042 1.55152 1.71521 2.11852 2.23397 2.76654 2.98733 3.01829 3.74478 3.86248 3.91624 3.94084 4.09954 4.11216 4.21005 4.21945 4.23625 4.35068 4.44414 4.50351 4.51192 4.53336 4.59148 4.65961 4.70405 4.76604 4.82277 4.86463 4.89576 4.92291 4.97625 5.00987 5.01827 5.13553 5.17363 5.20491 5.27117 5.29774 5.41097 5.42818 5.63354 5.64965 5.86387 5.90974 5.94056 6.05350 6.06704 6.31351 6.49963 6.67381 6.79387 7.06086 7.38596 8.17890 8.46163 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.002421 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.215342 B =11564.176726 C =12864.600458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.139 3.861 4 H 0.057 0.943 5 C -0.159 4.159 6 N -0.712 5.712 7 C 0.512 3.488 8 O -0.568 6.568 9 C 0.038 3.962 10 N -0.544 5.544 11 C 0.072 3.928 12 C 0.075 3.925 13 N -0.479 5.479 14 C 0.303 3.697 15 C -0.325 4.325 16 C -0.042 4.042 17 C -0.320 4.320 18 C 0.238 3.762 19 C -0.466 4.466 20 H 0.086 0.914 21 C 0.026 3.974 22 N -0.742 5.742 23 Si 0.985 3.015 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.258 1.258 27 N -0.531 5.531 28 C 0.097 3.903 29 C 0.070 3.930 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.415 0.585 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.012 0.988 44 H 0.087 0.913 45 H 0.118 0.882 46 H 0.133 0.867 47 H 0.107 0.893 48 H 0.277 0.723 49 H 0.019 0.981 50 H 0.067 0.933 51 H 0.097 0.903 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -23.522 -0.189 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.034 3.966 4 H 0.076 0.924 5 C -0.217 4.217 6 N -0.366 5.366 7 C 0.299 3.701 8 O -0.446 6.446 9 C -0.092 4.092 10 N -0.269 5.269 11 C -0.056 4.056 12 C -0.052 4.052 13 N -0.198 5.198 14 C 0.064 3.936 15 C -0.350 4.350 16 C -0.066 4.066 17 C -0.342 4.342 18 C 0.112 3.888 19 C -0.497 4.497 20 H 0.104 0.896 21 C -0.197 4.197 22 N -0.364 5.364 23 Si 0.806 3.194 24 H -0.192 1.192 25 H -0.190 1.190 26 H -0.181 1.181 27 N -0.250 5.250 28 C -0.031 4.031 29 C -0.058 4.058 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.252 0.748 39 H 0.145 0.855 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.030 0.970 44 H 0.105 0.895 45 H 0.136 0.864 46 H 0.151 0.849 47 H 0.125 0.875 48 H 0.088 0.912 49 H 0.037 0.963 50 H 0.086 0.914 51 H 0.116 0.884 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.191 -23.769 -0.676 24.145 hybrid contribution 0.042 1.187 0.039 1.188 sum 4.233 -22.582 -0.637 22.984 Atomic orbital electron populations 1.21789 0.95661 1.02174 1.01577 1.21781 0.96107 0.93566 1.04398 1.21008 0.95002 0.94041 0.86528 0.92426 1.22132 0.95093 1.01286 1.03212 1.45953 1.70295 1.06042 1.14355 1.20881 0.76138 0.82744 0.90353 1.90686 1.50826 1.64926 1.38174 1.22055 1.05012 0.87707 0.94426 1.61742 1.22534 1.03137 1.39537 1.22140 0.89596 0.92469 1.01358 1.22116 0.99015 0.94546 0.89490 1.59486 1.23253 1.00720 1.36370 1.20340 0.90574 0.90395 0.92241 1.21029 0.97420 0.95103 1.21435 1.21095 0.96886 0.94046 0.94610 1.21823 0.94286 0.99689 1.18418 1.18863 0.93734 0.87842 0.88407 1.19906 0.91411 0.95801 1.42578 0.89590 1.26922 1.04527 0.95329 0.92885 1.70220 1.31418 1.06953 1.27764 0.85165 0.76013 0.79296 0.78925 1.19199 1.19040 1.18145 1.68645 1.22605 1.10742 1.22962 1.21604 0.87625 0.93229 1.00644 1.22221 1.00307 0.92377 0.90873 0.92652 0.94135 0.91343 0.89524 0.89439 0.90614 0.94776 0.90926 0.74844 0.85461 0.89260 0.93309 0.89041 0.96977 0.89472 0.86437 0.84872 0.87501 0.91221 0.96250 0.91440 0.88435 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.80 71.98 0.71 -0.86 16 2 C -0.12 -1.02 5.47 30.59 0.17 -0.85 16 3 C 0.14 2.04 2.57 44.99 0.12 2.15 16 4 H 0.06 1.23 7.58 -2.38 -0.02 1.21 16 5 C -0.16 -2.24 9.48 71.98 0.68 -1.55 16 6 N -0.71 -10.23 4.53 -442.54 -2.00 -12.23 16 7 C 0.51 11.62 7.50 87.65 0.66 12.28 16 8 O -0.57 -18.87 13.99 -3.01 -0.04 -18.91 16 9 C 0.04 0.76 5.45 85.55 0.47 1.23 16 10 N -0.54 -16.34 4.45 -900.25 -4.00 -20.34 16 11 C 0.07 2.30 5.26 86.31 0.45 2.75 16 12 C 0.08 2.96 5.37 86.31 0.46 3.43 16 13 N -0.48 -21.25 4.73 -701.26 -3.32 -24.57 16 14 C 0.30 15.65 6.41 133.42 0.86 16.50 16 15 C -0.33 -15.47 9.23 22.73 0.21 -15.26 16 16 C -0.04 -1.96 10.15 22.39 0.23 -1.73 16 17 C -0.32 -16.63 9.83 22.87 0.22 -16.40 16 18 C 0.24 13.80 6.55 40.18 0.26 14.06 16 19 C -0.47 -26.07 9.14 23.46 0.21 -25.86 16 20 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 21 C 0.03 1.34 5.50 85.29 0.47 1.81 16 22 N -0.74 -39.88 11.46 21.84 0.25 -39.63 16 23 Si 0.99 39.03 29.56 68.60 2.03 41.06 16 24 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 26 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 27 N -0.53 -30.52 6.18 -186.59 -1.15 -31.67 16 28 C 0.10 4.18 4.78 86.31 0.41 4.59 16 29 C 0.07 2.17 5.61 86.31 0.48 2.65 16 30 H 0.05 0.57 7.75 -2.39 -0.02 0.55 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.41 3.06 8.60 -92.71 -0.80 2.26 16 39 H 0.13 1.88 8.03 -2.38 -0.02 1.86 16 40 H 0.09 1.32 8.12 -2.39 -0.02 1.30 16 41 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 3.00 5.84 -2.39 -0.01 2.98 16 43 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.09 3.22 6.77 -2.39 -0.02 3.20 16 45 H 0.12 4.93 7.16 -2.91 -0.02 4.91 16 46 H 0.13 5.07 8.06 -2.92 -0.02 5.05 16 47 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 48 H 0.28 13.48 8.29 -92.71 -0.77 12.72 16 49 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 50 H 0.07 3.26 7.82 -2.39 -0.02 3.25 16 51 H 0.10 2.61 8.07 -2.39 -0.02 2.59 16 52 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -74.29 411.77 -1.06 -75.36 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.11 Total: 32.00 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 7.07 Total: -1.06 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -10.23 Total: -128.44 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.04 Total: -18.91 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -74.29 -1.06 -75.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645612262.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.361 kcal (2) G-P(sol) polarization free energy of solvation -74.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds