Wall clock time and date at job start Wed Apr 1 2020 04:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46950 * 2 1 4 4 N 1.46503 * 109.46939 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99419 * 269.99419 * 4 3 2 6 6 O 1.21286 * 119.99846 * 179.97438 * 5 4 3 7 7 C 1.50700 * 120.00368 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.47290 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47290 * 179.97438 * 8 7 5 10 10 N 1.31796 * 119.12058 * 269.72900 * 9 8 7 11 11 C 1.32336 * 120.81692 * 179.75868 * 10 9 8 12 12 C 1.38604 * 119.10057 * 0.50570 * 11 10 9 13 13 C 1.38590 * 118.40115 * 359.74941 * 12 11 10 14 14 N 1.31790 * 119.12165 * 89.99983 * 9 8 7 15 15 C 1.46500 * 120.00162 * 89.99407 * 4 3 2 16 16 C 1.53076 * 109.43981 * 119.79583 * 15 4 3 17 17 C 1.53183 * 109.29478 * 181.23571 * 16 15 4 18 18 N 1.46930 * 108.89468 * 305.57480 * 17 16 15 19 19 C 1.36937 * 120.63259 * 233.51494 * 18 17 16 20 20 H 1.08000 * 119.99761 * 151.83401 * 19 18 17 21 21 C 1.38806 * 120.00219 * 331.83653 * 19 18 17 22 22 N 1.31624 * 120.00191 * 343.07619 * 21 19 18 23 23 Si 1.86800 * 120.00146 * 163.07294 * 21 19 18 24 24 H 1.48506 * 109.46812 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47258 * 119.99807 * 23 21 19 26 26 H 1.48499 * 109.47344 * 240.00342 * 23 21 19 27 27 C 1.46925 * 118.73328 * 53.53726 * 18 17 16 28 28 C 1.53033 * 109.45902 * 239.99602 * 15 4 3 29 29 H 1.08997 * 109.47764 * 300.00660 * 1 2 3 30 30 H 1.08998 * 109.47130 * 60.00694 * 1 2 3 31 31 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47190 * 239.99819 * 2 1 3 33 33 H 1.08998 * 109.47130 * 119.99306 * 2 1 3 34 34 H 1.08989 * 109.47515 * 59.99468 * 3 2 1 35 35 H 1.09008 * 109.46553 * 299.99530 * 3 2 1 36 36 H 1.09000 * 109.47212 * 300.00026 * 7 5 4 37 37 H 1.09000 * 109.47291 * 60.00004 * 7 5 4 38 38 H 1.09000 * 109.47063 * 300.00177 * 8 7 5 39 39 H 1.09000 * 109.46901 * 59.99825 * 8 7 5 40 40 H 1.07994 * 120.44701 * 180.23604 * 11 10 9 41 41 H 1.07997 * 120.79726 * 179.77460 * 12 11 10 42 42 H 1.08005 * 120.44827 * 180.02562 * 13 12 11 43 43 H 1.08994 * 109.45870 * 359.97438 * 15 4 3 44 44 H 1.09005 * 109.39190 * 61.35477 * 16 15 4 45 45 H 1.09004 * 109.62337 * 301.25270 * 16 15 4 46 46 H 1.09005 * 109.58619 * 185.72200 * 17 16 15 47 47 H 1.08998 * 109.58733 * 65.43770 * 17 16 15 48 48 H 0.96995 * 120.00379 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.58688 * 66.18006 * 27 18 17 50 50 H 1.08996 * 109.58570 * 186.45714 * 27 18 17 51 51 H 1.09003 * 109.49897 * 58.68032 * 28 15 4 52 52 H 1.09000 * 109.52987 * 298.59684 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1792 1.4425 1.1664 6 8 5.3921 1.4420 1.1659 7 6 3.4262 1.4418 2.4717 8 6 4.4208 1.4413 3.6343 9 6 3.6678 1.4413 4.9397 10 7 3.3525 2.5926 5.4982 11 6 2.6876 2.6318 6.6417 12 6 2.3326 1.4412 7.2562 13 6 2.6863 0.2508 6.6410 14 7 3.3470 0.2900 5.4950 15 6 4.2370 1.4426 -1.2696 16 6 5.1128 2.6953 -1.3525 17 6 5.8530 2.7076 -2.6936 18 7 6.5872 1.4437 -2.8434 19 6 7.9287 1.4444 -3.1182 20 1 8.5467 0.6203 -2.7938 21 6 8.4942 2.5042 -3.8137 22 7 7.7266 3.3302 -4.4927 23 14 10.3446 2.7585 -3.7859 24 1 10.9771 1.7010 -2.9569 25 1 10.8753 2.6847 -5.1708 26 1 10.6525 4.0914 -3.2081 27 6 5.8544 0.1791 -2.6933 28 6 5.1167 0.1931 -1.3508 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8898 35 1 1.6766 1.9563 -0.8901 36 1 2.7992 2.3316 2.5300 37 1 2.7999 0.5516 2.5295 38 1 5.0475 0.5513 3.5759 39 1 5.0475 2.3313 3.5767 40 1 2.4289 3.5786 7.0922 41 1 1.7929 1.4412 8.1917 42 1 2.4261 -0.6961 7.0906 43 1 3.5282 1.4422 -2.0976 44 1 5.8366 2.6854 -0.5375 45 1 4.4878 3.5849 -1.2737 46 1 6.5539 3.5421 -2.7165 47 1 5.1345 2.8114 -3.5066 48 1 8.1217 4.0706 -4.9790 49 1 5.1342 0.0755 -3.5049 50 1 6.5557 -0.6548 -2.7187 51 1 4.4928 -0.6971 -1.2692 52 1 5.8421 0.2047 -0.5373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690138792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:00 Heat of formation + Delta-G solvation = 27.210223 kcal Electronic energy + Delta-G solvation = -31128.651658 eV Core-core repulsion = 27128.703463 eV Total energy + Delta-G solvation = -3999.948194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.35420 -40.10832 -37.10158 -35.97787 -34.46850 -34.02253 -33.30516 -32.02128 -31.11147 -29.93848 -29.37665 -26.37704 -26.08527 -24.87424 -24.52815 -22.79980 -22.14490 -21.68634 -21.63246 -19.45531 -18.58183 -17.86575 -17.42541 -16.84125 -16.37643 -15.91914 -15.51022 -15.48823 -15.09930 -14.80051 -14.55552 -14.06667 -13.94233 -13.74320 -13.68981 -13.41651 -13.11028 -12.98737 -12.82450 -12.51803 -12.43495 -12.27383 -12.23887 -11.75175 -11.49371 -11.35587 -11.26566 -11.15646 -11.14265 -11.03592 -10.89306 -10.77984 -10.63391 -10.20458 -10.02818 -9.97834 -9.88735 -9.59476 -9.54697 -9.44210 -9.10324 -8.43311 -8.18395 -6.55743 -5.68742 -3.09789 0.53121 0.75063 2.89830 3.12523 3.44461 3.45729 3.52842 3.56403 3.64918 3.84503 4.23199 4.53376 4.59817 4.66072 4.72701 4.74268 4.83766 4.91642 4.99165 5.08829 5.17295 5.28705 5.35906 5.40755 5.45311 5.49805 5.54754 5.58276 5.69534 5.76276 5.83951 5.85810 5.89510 5.91854 5.94819 6.13038 6.13586 6.24914 6.42747 6.46326 6.63276 6.67058 6.69568 6.83873 6.91201 7.12046 7.20991 7.48671 7.69488 7.79428 7.81054 7.91010 8.50152 8.56516 9.32270 9.95900 10.52462 11.40130 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.002637 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.841379 B =10616.308542 C =12077.377508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.108 3.892 4 N -0.611 5.611 5 C 0.514 3.486 6 O -0.519 6.519 7 C -0.130 4.130 8 C -0.039 4.039 9 C 0.326 3.674 10 N -0.515 5.515 11 C 0.149 3.851 12 C -0.238 4.238 13 C 0.149 3.851 14 N -0.515 5.515 15 C 0.161 3.839 16 C -0.154 4.154 17 C 0.176 3.824 18 N -0.590 5.590 19 C -0.244 4.244 20 H 0.065 0.935 21 C 0.000 4.000 22 N -0.905 5.905 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.150 3.850 28 C -0.145 4.145 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.168 0.832 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.015 0.985 48 H 0.252 0.748 49 H 0.014 0.986 50 H 0.054 0.946 51 H 0.044 0.956 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.142 -4.359 20.822 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.016 4.016 4 N -0.343 5.343 5 C 0.301 3.699 6 O -0.395 6.395 7 C -0.171 4.171 8 C -0.078 4.078 9 C 0.059 3.941 10 N -0.228 5.228 11 C -0.017 4.017 12 C -0.260 4.260 13 C -0.018 4.018 14 N -0.229 5.229 15 C 0.060 3.940 16 C -0.194 4.194 17 C 0.050 3.950 18 N -0.312 5.312 19 C -0.374 4.374 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.551 5.551 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.216 1.216 27 C 0.023 3.977 28 C -0.185 4.185 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.185 0.815 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.033 0.967 48 H 0.062 0.938 49 H 0.032 0.968 50 H 0.073 0.927 51 H 0.063 0.937 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.906 -4.221 19.849 27.063 hybrid contribution 0.067 0.208 0.958 0.983 sum -17.839 -4.012 20.807 27.699 Atomic orbital electron populations 1.21701 0.95342 1.01852 1.01797 1.21994 0.95854 0.97458 1.02965 1.21651 0.80268 0.96682 1.02977 1.48315 1.05977 1.73406 1.06620 1.20309 0.88071 0.76619 0.84900 1.90736 1.13527 1.48216 1.86995 1.21606 0.98997 1.04197 0.92262 1.20175 0.96138 1.06138 0.85378 1.23324 0.91529 0.83315 0.95901 1.68340 1.12825 1.30611 1.11063 1.23294 0.89710 0.98853 0.89866 1.22913 1.04560 0.95073 1.03491 1.23285 0.89781 0.98839 0.89851 1.68334 1.12829 1.30610 1.11095 1.21104 0.93055 0.97195 0.82692 1.22633 0.99070 0.94421 1.03264 1.20718 0.94088 0.90552 0.89686 1.44025 1.05880 0.99433 1.81885 1.19224 0.83271 1.06480 1.28383 0.91766 1.25016 0.97739 1.00022 0.97051 1.70038 1.33781 1.18326 1.32916 0.86238 0.85723 0.77811 0.77136 1.20244 1.21865 1.21616 1.20840 0.94145 0.90265 0.92412 1.22429 0.99213 0.95008 1.01873 0.92852 0.92470 0.92557 0.91194 0.91857 0.90867 0.90304 0.89043 0.89000 0.88186 0.88137 0.81494 0.83564 0.81513 0.90796 0.90244 0.93819 0.89380 0.96732 0.93834 0.96821 0.92730 0.93729 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.14 -1.34 6.26 -26.73 -0.17 -1.51 16 3 C 0.11 1.12 5.18 -4.04 -0.02 1.10 16 4 N -0.61 -8.78 2.42 -166.04 -0.40 -9.18 16 5 C 0.51 7.86 7.10 -10.99 -0.08 7.78 16 6 O -0.52 -10.14 12.23 5.55 0.07 -10.07 16 7 C -0.13 -1.49 4.24 -27.88 -0.12 -1.61 16 8 C -0.04 -0.48 4.94 -27.88 -0.14 -0.62 16 9 C 0.33 3.77 6.90 -157.20 -1.08 2.68 16 10 N -0.51 -5.64 10.33 -10.72 -0.11 -5.75 16 11 C 0.15 1.12 11.31 -17.20 -0.19 0.93 16 12 C -0.24 -1.42 10.17 -39.32 -0.40 -1.82 16 13 C 0.15 1.11 11.30 -17.20 -0.19 0.91 16 14 N -0.51 -5.57 10.33 -10.73 -0.11 -5.68 16 15 C 0.16 2.84 2.50 -67.87 -0.17 2.67 16 16 C -0.15 -3.21 5.28 -26.60 -0.14 -3.35 16 17 C 0.18 4.39 5.30 -3.71 -0.02 4.38 16 18 N -0.59 -15.53 3.00 -172.33 -0.52 -16.04 16 19 C -0.24 -7.02 9.58 -15.06 -0.14 -7.17 16 20 H 0.06 1.84 7.89 -52.49 -0.41 1.42 16 21 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 22 N -0.91 -27.09 11.20 55.49 0.62 -26.47 16 23 Si 0.90 22.67 29.59 -169.99 -5.03 17.64 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 C 0.15 3.33 6.52 -3.71 -0.02 3.31 16 28 C -0.15 -2.78 5.27 -26.62 -0.14 -2.92 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.61 7.22 -51.93 -0.37 0.23 16 34 H 0.07 0.64 6.44 -51.94 -0.33 0.31 16 35 H 0.08 0.78 7.92 -51.92 -0.41 0.37 16 36 H 0.09 0.95 7.40 -51.93 -0.38 0.57 16 37 H 0.09 0.95 7.18 -51.93 -0.37 0.58 16 38 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 39 H 0.10 1.34 8.10 -51.93 -0.42 0.92 16 40 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.17 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.07 1.25 7.79 -51.93 -0.40 0.84 16 44 H 0.08 1.86 6.21 -51.93 -0.32 1.54 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 2.48 6.06 -51.93 -0.31 2.16 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.05 1.20 7.93 -51.93 -0.41 0.79 16 51 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.08 1.81 6.21 -51.93 -0.32 1.48 16 LS Contribution 409.16 15.07 6.17 6.17 Total: -1.00 -34.65 409.16 -10.76 -45.41 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.70 Total: 0.02 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -2.75 Total: 3.95 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.52 Total: -63.12 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.65 -10.76 -45.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690138792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.624 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds