Wall clock time and date at job start Wed Apr 1 2020 04:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46950 * 2 1 4 4 N 1.46503 * 109.46939 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99419 * 269.99419 * 4 3 2 6 6 O 1.21286 * 119.99846 * 179.97438 * 5 4 3 7 7 C 1.50700 * 120.00368 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.47290 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47290 * 179.97438 * 8 7 5 10 10 N 1.31796 * 119.12058 * 269.72900 * 9 8 7 11 11 C 1.32336 * 120.81692 * 179.75868 * 10 9 8 12 12 C 1.38604 * 119.10057 * 0.50570 * 11 10 9 13 13 C 1.38590 * 118.40115 * 359.74941 * 12 11 10 14 14 N 1.31790 * 119.12165 * 89.99983 * 9 8 7 15 15 C 1.46500 * 120.00162 * 89.99407 * 4 3 2 16 16 C 1.53076 * 109.43981 * 119.79583 * 15 4 3 17 17 C 1.53183 * 109.29478 * 181.23571 * 16 15 4 18 18 N 1.46930 * 108.89468 * 305.57480 * 17 16 15 19 19 C 1.36937 * 120.63259 * 233.51494 * 18 17 16 20 20 H 1.08000 * 119.99761 * 151.83401 * 19 18 17 21 21 C 1.38806 * 120.00219 * 331.83653 * 19 18 17 22 22 N 1.31624 * 120.00191 * 343.07619 * 21 19 18 23 23 Si 1.86800 * 120.00146 * 163.07294 * 21 19 18 24 24 H 1.48506 * 109.46812 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47258 * 119.99807 * 23 21 19 26 26 H 1.48499 * 109.47344 * 240.00342 * 23 21 19 27 27 C 1.46925 * 118.73328 * 53.53726 * 18 17 16 28 28 C 1.53033 * 109.45902 * 239.99602 * 15 4 3 29 29 H 1.08997 * 109.47764 * 300.00660 * 1 2 3 30 30 H 1.08998 * 109.47130 * 60.00694 * 1 2 3 31 31 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47190 * 239.99819 * 2 1 3 33 33 H 1.08998 * 109.47130 * 119.99306 * 2 1 3 34 34 H 1.08989 * 109.47515 * 59.99468 * 3 2 1 35 35 H 1.09008 * 109.46553 * 299.99530 * 3 2 1 36 36 H 1.09000 * 109.47212 * 300.00026 * 7 5 4 37 37 H 1.09000 * 109.47291 * 60.00004 * 7 5 4 38 38 H 1.09000 * 109.47063 * 300.00177 * 8 7 5 39 39 H 1.09000 * 109.46901 * 59.99825 * 8 7 5 40 40 H 1.07994 * 120.44701 * 180.23604 * 11 10 9 41 41 H 1.07997 * 120.79726 * 179.77460 * 12 11 10 42 42 H 1.08005 * 120.44827 * 180.02562 * 13 12 11 43 43 H 1.08994 * 109.45870 * 359.97438 * 15 4 3 44 44 H 1.09005 * 109.39190 * 61.35477 * 16 15 4 45 45 H 1.09004 * 109.62337 * 301.25270 * 16 15 4 46 46 H 1.09005 * 109.58619 * 185.72200 * 17 16 15 47 47 H 1.08998 * 109.58733 * 65.43770 * 17 16 15 48 48 H 0.96995 * 120.00379 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.58688 * 66.18006 * 27 18 17 50 50 H 1.08996 * 109.58570 * 186.45714 * 27 18 17 51 51 H 1.09003 * 109.49897 * 58.68032 * 28 15 4 52 52 H 1.09000 * 109.52987 * 298.59684 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1792 1.4425 1.1664 6 8 5.3921 1.4420 1.1659 7 6 3.4262 1.4418 2.4717 8 6 4.4208 1.4413 3.6343 9 6 3.6678 1.4413 4.9397 10 7 3.3525 2.5926 5.4982 11 6 2.6876 2.6318 6.6417 12 6 2.3326 1.4412 7.2562 13 6 2.6863 0.2508 6.6410 14 7 3.3470 0.2900 5.4950 15 6 4.2370 1.4426 -1.2696 16 6 5.1128 2.6953 -1.3525 17 6 5.8530 2.7076 -2.6936 18 7 6.5872 1.4437 -2.8434 19 6 7.9287 1.4444 -3.1182 20 1 8.5467 0.6203 -2.7938 21 6 8.4942 2.5042 -3.8137 22 7 7.7266 3.3302 -4.4927 23 14 10.3446 2.7585 -3.7859 24 1 10.9771 1.7010 -2.9569 25 1 10.8753 2.6847 -5.1708 26 1 10.6525 4.0914 -3.2081 27 6 5.8544 0.1791 -2.6933 28 6 5.1167 0.1931 -1.3508 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8898 35 1 1.6766 1.9563 -0.8901 36 1 2.7992 2.3316 2.5300 37 1 2.7999 0.5516 2.5295 38 1 5.0475 0.5513 3.5759 39 1 5.0475 2.3313 3.5767 40 1 2.4289 3.5786 7.0922 41 1 1.7929 1.4412 8.1917 42 1 2.4261 -0.6961 7.0906 43 1 3.5282 1.4422 -2.0976 44 1 5.8366 2.6854 -0.5375 45 1 4.4878 3.5849 -1.2737 46 1 6.5539 3.5421 -2.7165 47 1 5.1345 2.8114 -3.5066 48 1 8.1217 4.0706 -4.9790 49 1 5.1342 0.0755 -3.5049 50 1 6.5557 -0.6548 -2.7187 51 1 4.4928 -0.6971 -1.2692 52 1 5.8421 0.2047 -0.5373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690138792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:58 Heat of formation + Delta-G solvation = 6.512014 kcal Electronic energy + Delta-G solvation = -31129.549199 eV Core-core repulsion = 27128.703463 eV Total energy + Delta-G solvation = -4000.845736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.02129 -41.35401 -38.76928 -37.17044 -35.47559 -34.71655 -34.66773 -33.43856 -32.17254 -31.61037 -31.04284 -27.54249 -27.20306 -26.01484 -25.44981 -24.06733 -23.85111 -22.90409 -22.52607 -21.10240 -19.84536 -18.88434 -18.53222 -18.01652 -17.45666 -17.20307 -16.78465 -16.50552 -16.10025 -15.87275 -15.62550 -15.42982 -15.32754 -14.99105 -14.93692 -14.74806 -14.39867 -14.15847 -14.03538 -13.89233 -13.82406 -13.35460 -13.15614 -13.02698 -13.01541 -12.68635 -12.60791 -12.55407 -12.31990 -12.20680 -12.10663 -11.98441 -11.84445 -11.79865 -11.76839 -11.56785 -11.36806 -11.20661 -10.64273 -10.52590 -10.33842 -10.19522 -9.52710 -8.68289 -7.88803 -5.32922 -0.07773 0.18625 1.42591 1.44933 1.55864 1.70736 2.00715 2.49785 2.78886 2.89616 3.26089 3.26525 3.55358 3.68683 3.79438 3.91037 4.00891 4.03280 4.05588 4.07774 4.22308 4.24058 4.25610 4.36692 4.42786 4.49350 4.54133 4.59035 4.60393 4.69343 4.71120 4.78212 4.83714 4.87938 4.97098 4.99284 5.01027 5.03172 5.09937 5.17684 5.24460 5.28656 5.45076 5.48030 5.48358 5.51847 5.63368 5.68475 5.81962 6.09484 6.38908 6.54853 7.14239 7.14324 7.30706 7.85506 8.36670 9.17908 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.002637 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.841379 B =10616.308542 C =12077.377508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.103 3.897 4 N -0.606 5.606 5 C 0.508 3.492 6 O -0.569 6.569 7 C -0.111 4.111 8 C -0.033 4.033 9 C 0.308 3.692 10 N -0.542 5.542 11 C 0.135 3.865 12 C -0.217 4.217 13 C 0.136 3.864 14 N -0.540 5.540 15 C 0.170 3.830 16 C -0.138 4.138 17 C 0.184 3.816 18 N -0.609 5.609 19 C -0.260 4.260 20 H 0.058 0.942 21 C -0.050 4.050 22 N -0.932 5.932 23 Si 0.964 3.036 24 H -0.271 1.271 25 H -0.286 1.286 26 H -0.290 1.290 27 C 0.147 3.853 28 C -0.130 4.130 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.198 0.802 41 H 0.187 0.813 42 H 0.199 0.801 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.006 0.994 48 H 0.250 0.750 49 H 0.024 0.976 50 H 0.049 0.951 51 H 0.073 0.927 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.090 -4.943 23.144 32.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C -0.019 4.019 4 N -0.338 5.338 5 C 0.297 3.703 6 O -0.448 6.448 7 C -0.152 4.152 8 C -0.073 4.073 9 C 0.040 3.960 10 N -0.257 5.257 11 C -0.029 4.029 12 C -0.238 4.238 13 C -0.029 4.029 14 N -0.255 5.255 15 C 0.067 3.933 16 C -0.178 4.178 17 C 0.058 3.942 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.076 0.924 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.196 1.196 25 H -0.212 1.212 26 H -0.217 1.217 27 C 0.021 3.979 28 C -0.170 4.170 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.214 0.786 41 H 0.205 0.795 42 H 0.215 0.785 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.024 0.976 48 H 0.060 0.940 49 H 0.042 0.958 50 H 0.068 0.932 51 H 0.091 0.909 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.916 -4.828 22.198 30.879 hybrid contribution 0.914 0.363 0.345 1.042 sum -20.002 -4.464 22.543 30.466 Atomic orbital electron populations 1.21664 0.93530 1.02417 1.02593 1.21928 0.97304 0.96274 1.02256 1.21967 0.77303 0.97983 1.04650 1.48268 1.07685 1.72767 1.05055 1.20994 0.87688 0.75381 0.86194 1.90728 1.15915 1.50385 1.87737 1.21492 0.98443 1.05692 0.89528 1.19962 0.96161 1.04195 0.86968 1.22929 0.92982 0.84086 0.95964 1.68282 1.14047 1.30520 1.12832 1.23915 0.89022 1.00986 0.89013 1.23330 1.02707 0.93681 1.04084 1.23922 0.89025 1.00964 0.88971 1.68280 1.13973 1.30399 1.12826 1.20786 0.92961 0.94524 0.85014 1.22357 0.98860 0.97148 0.99461 1.20495 0.93116 0.89046 0.91551 1.44270 1.05686 1.01119 1.82219 1.19471 0.84800 1.06583 1.28198 0.92380 1.25749 1.01891 0.99889 0.97014 1.70168 1.35372 1.18695 1.33640 0.85252 0.80788 0.77502 0.77208 1.19602 1.21245 1.21681 1.20980 0.94189 0.88363 0.94339 1.22202 0.98900 0.97145 0.98737 0.91694 0.92053 0.92157 0.92429 0.92117 0.88593 0.89290 0.87331 0.87209 0.90020 0.90236 0.78561 0.79522 0.78453 0.89056 0.93153 0.92132 0.93209 0.97637 0.94045 0.95763 0.93215 0.90864 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.14 -2.21 6.26 30.59 0.19 -2.02 16 3 C 0.10 1.85 5.18 86.38 0.45 2.29 16 4 N -0.61 -16.70 2.42 -797.62 -1.93 -18.63 16 5 C 0.51 15.54 7.10 87.66 0.62 16.17 16 6 O -0.57 -23.24 12.23 -3.05 -0.04 -23.27 16 7 C -0.11 -2.47 4.24 29.85 0.13 -2.34 16 8 C -0.03 -0.85 4.94 29.85 0.15 -0.70 16 9 C 0.31 7.00 6.90 138.75 0.96 7.95 16 10 N -0.54 -11.34 10.33 -187.84 -1.94 -13.29 16 11 C 0.14 1.69 11.31 84.70 0.96 2.65 16 12 C -0.22 -1.78 10.17 22.44 0.23 -1.55 16 13 C 0.14 1.66 11.30 84.70 0.96 2.61 16 14 N -0.54 -11.08 10.33 -187.85 -1.94 -13.02 16 15 C 0.17 5.91 2.50 45.03 0.11 6.02 16 16 C -0.14 -5.89 5.28 30.68 0.16 -5.73 16 17 C 0.18 9.54 5.30 86.36 0.46 10.00 16 18 N -0.61 -33.16 3.00 -699.11 -2.09 -35.25 16 19 C -0.26 -15.50 9.58 84.03 0.81 -14.69 16 20 H 0.06 3.45 7.89 -2.91 -0.02 3.42 16 21 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 22 N -0.93 -57.50 11.20 21.65 0.24 -57.26 16 23 Si 0.96 47.87 29.59 68.60 2.03 49.90 16 24 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 27 C 0.15 6.61 6.52 86.36 0.56 7.17 16 28 C -0.13 -4.98 5.27 30.67 0.16 -4.82 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.01 7.22 -2.39 -0.02 0.99 16 34 H 0.10 1.34 6.44 -2.39 -0.02 1.32 16 35 H 0.09 1.48 7.92 -2.38 -0.02 1.46 16 36 H 0.11 2.06 7.40 -2.39 -0.02 2.04 16 37 H 0.11 2.07 7.18 -2.39 -0.02 2.05 16 38 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 39 H 0.08 2.29 8.10 -2.39 -0.02 2.27 16 40 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.19 -0.03 8.06 -2.91 -0.02 -0.06 16 42 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 43 H 0.09 2.90 7.79 -2.39 -0.02 2.89 16 44 H 0.05 2.46 6.21 -2.38 -0.01 2.45 16 45 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 46 H 0.05 2.94 6.06 -2.38 -0.01 2.92 16 47 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 48 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 49 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 51 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 52 H 0.05 2.41 6.21 -2.39 -0.01 2.40 16 Total: -1.00 -80.09 409.16 3.25 -76.84 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.89 Total: 14.47 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 8.03 Total: 19.50 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -7.67 Total: -137.45 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.04 Total: -23.27 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -80.09 3.25 -76.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690138792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.355 kcal (2) G-P(sol) polarization free energy of solvation -80.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds