Wall clock time and date at job start Wed Apr 1 2020 04:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46941 * 2 1 4 4 N 1.46500 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.34772 * 119.99997 * 90.00059 * 4 3 2 6 6 O 1.21285 * 120.00285 * 179.97438 * 5 4 3 7 7 C 1.50697 * 120.00230 * 0.02562 * 5 4 3 8 8 C 1.53000 * 109.47499 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47203 * 179.97438 * 8 7 5 10 10 C 1.38622 * 120.44719 * 124.99869 * 9 8 7 11 11 C 1.38577 * 118.40072 * 179.69951 * 10 9 8 12 12 N 1.32343 * 119.10406 * 0.27905 * 11 10 9 13 13 C 1.31780 * 120.81844 * 359.97438 * 12 11 10 14 14 N 1.31813 * 121.75713 * 359.97438 * 13 12 11 15 15 C 1.46501 * 120.00022 * 270.00171 * 4 3 2 16 16 C 1.53040 * 109.46090 * 240.02589 * 15 4 3 17 17 C 1.53195 * 109.31229 * 178.60005 * 16 15 4 18 18 N 1.46919 * 108.76395 * 54.65449 * 17 16 15 19 19 C 1.36935 * 120.62707 * 126.40509 * 18 17 16 20 20 H 1.08004 * 120.00571 * 332.60630 * 19 18 17 21 21 C 1.38819 * 120.00308 * 152.60846 * 19 18 17 22 22 N 1.31616 * 120.00416 * 159.34201 * 21 19 18 23 23 Si 1.86800 * 119.99387 * 339.34644 * 21 19 18 24 24 H 1.48500 * 109.47133 * 92.94368 * 23 21 19 25 25 H 1.48506 * 109.46719 * 212.93966 * 23 21 19 26 26 H 1.48499 * 109.47164 * 332.93915 * 23 21 19 27 27 C 1.46921 * 118.74243 * 306.38633 * 18 17 16 28 28 C 1.53035 * 109.46011 * 119.96975 * 15 4 3 29 29 H 1.08991 * 109.47410 * 59.99765 * 1 2 3 30 30 H 1.08992 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46468 * 299.99544 * 1 2 3 32 32 H 1.08997 * 109.46874 * 240.00926 * 2 1 3 33 33 H 1.08991 * 109.47410 * 120.00235 * 2 1 3 34 34 H 1.09003 * 109.46927 * 60.00146 * 3 2 1 35 35 H 1.09001 * 109.47238 * 300.00358 * 3 2 1 36 36 H 1.08996 * 109.47287 * 59.99478 * 7 5 4 37 37 H 1.09003 * 109.46834 * 299.99895 * 7 5 4 38 38 H 1.08996 * 109.47048 * 59.99825 * 8 7 5 39 39 H 1.09003 * 109.46879 * 299.99729 * 8 7 5 40 40 H 1.07999 * 120.80132 * 359.97438 * 10 9 8 41 41 H 1.08004 * 120.44518 * 180.29736 * 11 10 9 42 42 H 1.07999 * 119.12360 * 179.97438 * 13 12 11 43 43 H 1.09000 * 109.45620 * 0.02562 * 15 4 3 44 44 H 1.09000 * 109.49623 * 298.56760 * 16 15 4 45 45 H 1.08999 * 109.49658 * 58.66220 * 16 15 4 46 46 H 1.09007 * 109.59797 * 294.86674 * 17 16 15 47 47 H 1.08996 * 109.69971 * 174.50960 * 17 16 15 48 48 H 0.97001 * 119.99944 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.58477 * 293.81616 * 27 18 17 50 50 H 1.08996 * 109.70812 * 173.46696 * 27 18 17 51 51 H 1.08996 * 109.50432 * 301.33767 * 28 15 4 52 52 H 1.09004 * 109.50087 * 61.40591 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1784 1.4428 -1.1681 6 8 5.3912 1.4433 -1.1686 7 6 3.4244 1.4436 -2.4728 8 6 4.4181 1.4430 -3.6362 9 6 3.6640 1.4432 -4.9410 10 6 3.9064 2.4219 -5.8923 11 6 3.1934 2.3778 -7.0797 12 7 2.3066 1.4126 -7.2627 13 6 2.0990 0.5016 -6.3334 14 7 2.7590 0.5113 -5.1925 15 6 4.2380 1.4424 1.2678 16 6 5.1173 2.6924 1.3488 17 6 5.8555 2.7065 2.6911 18 7 6.5891 1.4423 2.8403 19 6 7.9307 1.4425 3.1143 20 1 8.5459 2.2731 2.8011 21 6 8.5004 0.3749 3.7946 22 7 9.7958 0.1576 3.7119 23 14 7.4281 -0.7533 4.8275 24 1 6.9933 -1.9116 4.0061 25 1 8.2037 -1.2392 5.9970 26 1 6.2351 -0.0061 5.3004 27 6 5.8558 0.1781 2.6904 28 6 5.1173 0.1924 1.3483 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 2.7980 2.3337 -2.5300 37 1 2.7974 0.5538 -2.5306 38 1 5.0441 0.5526 -3.5789 39 1 5.0454 2.3326 -3.5786 40 1 4.6365 3.1975 -5.7142 41 1 3.3593 3.1210 -7.8456 42 1 1.3684 -0.2737 -6.5113 43 1 3.5299 1.4418 2.0964 44 1 5.8421 2.6806 0.5348 45 1 4.4930 3.5822 1.2677 46 1 5.1356 2.8094 3.5031 47 1 6.5563 3.5409 2.7162 48 1 10.1938 -0.5886 4.1870 49 1 5.1360 0.0746 3.5025 50 1 6.5553 -0.6575 2.7137 51 1 4.4931 -0.6974 1.2671 52 1 5.8418 0.2041 0.5341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713101666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:50 Heat of formation + Delta-G solvation = 30.401736 kcal Electronic energy + Delta-G solvation = -31238.647940 eV Core-core repulsion = 27238.838141 eV Total energy + Delta-G solvation = -3999.809800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.36480 -40.27459 -37.44533 -36.14879 -35.26086 -33.50461 -33.05114 -32.10525 -31.37052 -30.31501 -30.01791 -26.51529 -26.24031 -24.77065 -24.47138 -22.88331 -22.70085 -21.80525 -21.65053 -19.82797 -18.73064 -17.86338 -17.39194 -16.81781 -16.50483 -16.00188 -15.80906 -15.68508 -15.12779 -15.01886 -14.68107 -14.22502 -14.11964 -14.00615 -13.86020 -13.62928 -13.27297 -13.05506 -12.91621 -12.75124 -12.61237 -12.34725 -12.33453 -12.02541 -11.76428 -11.64632 -11.58319 -11.47582 -11.19181 -11.07618 -10.92376 -10.80077 -10.73292 -10.34635 -10.18928 -10.01617 -9.94935 -9.69411 -9.56836 -9.39693 -9.25698 -8.56220 -8.40845 -6.89861 -5.87232 -3.21923 0.56112 0.69630 2.76883 3.02895 3.36825 3.43248 3.51783 3.55001 3.68744 3.83019 4.07037 4.46167 4.59449 4.63488 4.69694 4.73504 4.77754 4.82753 4.90746 5.02833 5.08589 5.16073 5.18075 5.26807 5.34819 5.38880 5.42041 5.45416 5.49653 5.58516 5.68950 5.72942 5.79100 5.82564 5.85415 5.98156 6.04988 6.06324 6.15751 6.17097 6.25860 6.36227 6.48524 6.65322 6.68769 6.71031 6.85074 6.94900 7.12699 7.58537 7.73720 8.04490 8.36614 8.40960 9.02046 9.80000 10.17803 11.29073 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.002658 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.342409 B =10532.113465 C =11566.676226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.611 5.611 5 C 0.511 3.489 6 O -0.519 6.519 7 C -0.130 4.130 8 C -0.059 4.059 9 C 0.183 3.817 10 C -0.224 4.224 11 C 0.148 3.852 12 N -0.529 5.529 13 C 0.295 3.705 14 N -0.517 5.517 15 C 0.160 3.840 16 C -0.148 4.148 17 C 0.154 3.846 18 N -0.603 5.603 19 C -0.254 4.254 20 H 0.085 0.915 21 C 0.021 3.979 22 N -0.910 5.910 23 Si 0.883 3.117 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.131 3.869 28 C -0.147 4.147 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.195 0.805 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.019 0.981 47 H 0.064 0.936 48 H 0.261 0.739 49 H 0.021 0.979 50 H 0.073 0.927 51 H 0.048 0.952 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.376 4.078 -17.338 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.015 4.015 4 N -0.344 5.344 5 C 0.298 3.702 6 O -0.395 6.395 7 C -0.171 4.171 8 C -0.097 4.097 9 C 0.037 3.963 10 C -0.246 4.246 11 C -0.017 4.017 12 N -0.243 5.243 13 C 0.007 3.993 14 N -0.232 5.232 15 C 0.058 3.942 16 C -0.188 4.188 17 C 0.027 3.973 18 N -0.327 5.327 19 C -0.382 4.382 20 H 0.102 0.898 21 C -0.177 4.177 22 N -0.553 5.553 23 Si 0.713 3.287 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.196 1.196 27 C 0.005 3.995 28 C -0.187 4.187 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.167 0.833 41 H 0.185 0.815 42 H 0.212 0.788 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.037 0.963 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.039 0.961 50 H 0.091 0.909 51 H 0.067 0.933 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.225 3.306 -17.429 27.662 hybrid contribution -0.138 -0.165 0.715 0.747 sum -21.363 3.141 -16.714 27.306 Atomic orbital electron populations 1.21695 0.95237 1.01965 1.01753 1.22000 0.95967 0.97321 1.03102 1.21660 0.79979 0.96873 1.02939 1.48274 1.06096 1.73582 1.06447 1.20472 0.88136 0.76495 0.85077 1.90750 1.13546 1.48166 1.87034 1.21611 0.98958 1.04654 0.91838 1.20406 0.96360 1.05699 0.87275 1.21817 0.90397 0.88378 0.95699 1.22866 1.03519 1.01928 0.96271 1.23245 0.88867 0.94255 0.95363 1.68419 1.18202 1.04349 1.33346 1.24998 0.95096 0.94841 0.84336 1.68265 1.07783 1.24896 1.22226 1.21049 0.93037 0.96837 0.83240 1.22444 0.99340 0.95147 1.01864 1.20860 0.94218 0.89568 0.92650 1.44324 1.06571 0.99355 1.82423 1.18925 0.81563 1.07419 1.30338 0.89770 1.25269 0.95249 0.98167 0.99035 1.69846 1.10559 1.30657 1.44229 0.86944 0.80460 0.80647 0.80619 1.21724 1.23257 1.19634 1.21286 0.94696 0.90414 0.93147 1.22449 0.99267 0.95190 1.01762 0.92707 0.92486 0.92612 0.91582 0.91304 0.90402 0.90709 0.89495 0.87994 0.88221 0.88763 0.83291 0.81505 0.78823 0.90617 0.89508 0.93245 0.96296 0.91727 0.92879 0.96095 0.90869 0.93349 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.15 -1.26 6.26 -26.73 -0.17 -1.43 16 3 C 0.11 0.99 5.18 -4.04 -0.02 0.97 16 4 N -0.61 -7.86 2.42 -166.06 -0.40 -8.26 16 5 C 0.51 7.03 7.10 -10.99 -0.08 6.95 16 6 O -0.52 -9.38 12.22 5.55 0.07 -9.32 16 7 C -0.13 -1.29 4.12 -27.88 -0.11 -1.40 16 8 C -0.06 -0.59 4.94 -27.88 -0.14 -0.72 16 9 C 0.18 1.70 6.21 -82.24 -0.51 1.19 16 10 C -0.22 -1.67 9.80 -39.31 -0.39 -2.06 16 11 C 0.15 1.08 11.30 -17.21 -0.19 0.88 16 12 N -0.53 -4.77 10.44 -14.58 -0.15 -4.92 16 13 C 0.30 2.55 12.29 -92.15 -1.13 1.42 16 14 N -0.52 -5.09 10.03 -10.80 -0.11 -5.20 16 15 C 0.16 2.56 2.51 -67.89 -0.17 2.39 16 16 C -0.15 -2.59 5.27 -26.61 -0.14 -2.73 16 17 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 18 N -0.60 -14.88 2.77 -172.32 -0.48 -15.35 16 19 C -0.25 -7.36 10.03 -15.06 -0.15 -7.51 16 20 H 0.08 2.60 8.06 -52.48 -0.42 2.18 16 21 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 22 N -0.91 -28.72 13.97 55.49 0.78 -27.95 16 23 Si 0.88 22.96 24.35 -169.99 -4.14 18.82 16 24 H -0.29 -7.30 6.62 56.52 0.37 -6.93 16 25 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 26 H -0.27 -6.86 6.63 56.52 0.37 -6.49 16 27 C 0.13 2.97 4.20 -3.71 -0.02 2.95 16 28 C -0.15 -2.81 5.27 -26.61 -0.14 -2.95 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.61 7.22 -51.93 -0.38 0.23 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.65 7.92 -51.93 -0.41 0.24 16 35 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 36 H 0.09 0.72 7.40 -51.93 -0.38 0.33 16 37 H 0.10 0.97 7.02 -51.93 -0.36 0.61 16 38 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 39 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 40 H 0.15 0.79 8.01 -52.49 -0.42 0.37 16 41 H 0.17 0.69 8.06 -52.48 -0.42 0.26 16 42 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.08 1.12 7.79 -51.93 -0.40 0.71 16 44 H 0.09 1.77 6.21 -51.93 -0.32 1.45 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 48 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 49 H 0.02 0.46 7.07 -51.93 -0.37 0.09 16 50 H 0.07 1.84 4.50 -51.93 -0.23 1.61 16 51 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.09 1.95 6.21 -51.93 -0.32 1.63 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -35.19 401.90 -10.08 -45.27 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.60 Total: -0.07 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -3.11 Total: 0.92 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.36 Total: -61.69 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.14 Total: 18.82 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.19 -10.08 -45.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713101666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.675 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds