Wall clock time and date at job start Wed Apr 1 2020 04:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46941 * 2 1 4 4 N 1.46500 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.34772 * 119.99997 * 90.00059 * 4 3 2 6 6 O 1.21285 * 120.00285 * 179.97438 * 5 4 3 7 7 C 1.50697 * 120.00230 * 0.02562 * 5 4 3 8 8 C 1.53000 * 109.47499 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47203 * 179.97438 * 8 7 5 10 10 C 1.38622 * 120.44719 * 124.99869 * 9 8 7 11 11 C 1.38577 * 118.40072 * 179.69951 * 10 9 8 12 12 N 1.32343 * 119.10406 * 0.27905 * 11 10 9 13 13 C 1.31780 * 120.81844 * 359.97438 * 12 11 10 14 14 N 1.31813 * 121.75713 * 359.97438 * 13 12 11 15 15 C 1.46501 * 120.00022 * 270.00171 * 4 3 2 16 16 C 1.53040 * 109.46090 * 240.02589 * 15 4 3 17 17 C 1.53195 * 109.31229 * 178.60005 * 16 15 4 18 18 N 1.46919 * 108.76395 * 54.65449 * 17 16 15 19 19 C 1.36935 * 120.62707 * 126.40509 * 18 17 16 20 20 H 1.08004 * 120.00571 * 332.60630 * 19 18 17 21 21 C 1.38819 * 120.00308 * 152.60846 * 19 18 17 22 22 N 1.31616 * 120.00416 * 159.34201 * 21 19 18 23 23 Si 1.86800 * 119.99387 * 339.34644 * 21 19 18 24 24 H 1.48500 * 109.47133 * 92.94368 * 23 21 19 25 25 H 1.48506 * 109.46719 * 212.93966 * 23 21 19 26 26 H 1.48499 * 109.47164 * 332.93915 * 23 21 19 27 27 C 1.46921 * 118.74243 * 306.38633 * 18 17 16 28 28 C 1.53035 * 109.46011 * 119.96975 * 15 4 3 29 29 H 1.08991 * 109.47410 * 59.99765 * 1 2 3 30 30 H 1.08992 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46468 * 299.99544 * 1 2 3 32 32 H 1.08997 * 109.46874 * 240.00926 * 2 1 3 33 33 H 1.08991 * 109.47410 * 120.00235 * 2 1 3 34 34 H 1.09003 * 109.46927 * 60.00146 * 3 2 1 35 35 H 1.09001 * 109.47238 * 300.00358 * 3 2 1 36 36 H 1.08996 * 109.47287 * 59.99478 * 7 5 4 37 37 H 1.09003 * 109.46834 * 299.99895 * 7 5 4 38 38 H 1.08996 * 109.47048 * 59.99825 * 8 7 5 39 39 H 1.09003 * 109.46879 * 299.99729 * 8 7 5 40 40 H 1.07999 * 120.80132 * 359.97438 * 10 9 8 41 41 H 1.08004 * 120.44518 * 180.29736 * 11 10 9 42 42 H 1.07999 * 119.12360 * 179.97438 * 13 12 11 43 43 H 1.09000 * 109.45620 * 0.02562 * 15 4 3 44 44 H 1.09000 * 109.49623 * 298.56760 * 16 15 4 45 45 H 1.08999 * 109.49658 * 58.66220 * 16 15 4 46 46 H 1.09007 * 109.59797 * 294.86674 * 17 16 15 47 47 H 1.08996 * 109.69971 * 174.50960 * 17 16 15 48 48 H 0.97001 * 119.99944 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.58477 * 293.81616 * 27 18 17 50 50 H 1.08996 * 109.70812 * 173.46696 * 27 18 17 51 51 H 1.08996 * 109.50432 * 301.33767 * 28 15 4 52 52 H 1.09004 * 109.50087 * 61.40591 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1784 1.4428 -1.1681 6 8 5.3912 1.4433 -1.1686 7 6 3.4244 1.4436 -2.4728 8 6 4.4181 1.4430 -3.6362 9 6 3.6640 1.4432 -4.9410 10 6 3.9064 2.4219 -5.8923 11 6 3.1934 2.3778 -7.0797 12 7 2.3066 1.4126 -7.2627 13 6 2.0990 0.5016 -6.3334 14 7 2.7590 0.5113 -5.1925 15 6 4.2380 1.4424 1.2678 16 6 5.1173 2.6924 1.3488 17 6 5.8555 2.7065 2.6911 18 7 6.5891 1.4423 2.8403 19 6 7.9307 1.4425 3.1143 20 1 8.5459 2.2731 2.8011 21 6 8.5004 0.3749 3.7946 22 7 9.7958 0.1576 3.7119 23 14 7.4281 -0.7533 4.8275 24 1 6.9933 -1.9116 4.0061 25 1 8.2037 -1.2392 5.9970 26 1 6.2351 -0.0061 5.3004 27 6 5.8558 0.1781 2.6904 28 6 5.1173 0.1924 1.3483 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 2.7980 2.3337 -2.5300 37 1 2.7974 0.5538 -2.5306 38 1 5.0441 0.5526 -3.5789 39 1 5.0454 2.3326 -3.5786 40 1 4.6365 3.1975 -5.7142 41 1 3.3593 3.1210 -7.8456 42 1 1.3684 -0.2737 -6.5113 43 1 3.5299 1.4418 2.0964 44 1 5.8421 2.6806 0.5348 45 1 4.4930 3.5822 1.2677 46 1 5.1356 2.8094 3.5031 47 1 6.5563 3.5409 2.7162 48 1 10.1938 -0.5886 4.1870 49 1 5.1360 0.0746 3.5025 50 1 6.5553 -0.6575 2.7137 51 1 4.4931 -0.6974 1.2671 52 1 5.8418 0.2041 0.5341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713101666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:49 Heat of formation + Delta-G solvation = 8.731161 kcal Electronic energy + Delta-G solvation = -31239.587647 eV Core-core repulsion = 27238.838141 eV Total energy + Delta-G solvation = -4000.749506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.00346 -41.38742 -38.99011 -37.21033 -36.04681 -34.91852 -33.72823 -33.57605 -32.42633 -31.94174 -31.40287 -27.57627 -27.20088 -25.96488 -25.27802 -24.45309 -23.94341 -22.89017 -22.51229 -21.33023 -19.82564 -18.94144 -18.47901 -18.00446 -17.60506 -17.21191 -16.86347 -16.53104 -16.32869 -15.92982 -15.80057 -15.54193 -15.31094 -15.08795 -14.97145 -14.82501 -14.59598 -14.37672 -14.08158 -14.02990 -13.78957 -13.56811 -13.41458 -13.26967 -12.99780 -12.75987 -12.60859 -12.47273 -12.38739 -12.19449 -12.15086 -12.00308 -11.79631 -11.69510 -11.63356 -11.50001 -11.35317 -11.28278 -10.74346 -10.58129 -10.42841 -10.19887 -9.54820 -8.93705 -8.16986 -5.48367 -0.04161 0.09200 1.29049 1.38766 1.49406 1.71599 2.02416 2.41673 2.81319 3.03028 3.03070 3.30932 3.36334 3.42542 3.65349 3.87899 3.96628 4.00704 4.05325 4.09785 4.14374 4.20852 4.25757 4.28686 4.37794 4.43978 4.50278 4.56418 4.59728 4.64314 4.66373 4.72613 4.76797 4.80203 4.82068 4.94132 4.96291 4.98449 5.04764 5.06686 5.11656 5.26920 5.27867 5.35706 5.45690 5.46832 5.52902 5.77946 5.86085 6.05182 6.11582 6.54288 6.91524 7.12800 7.31622 7.62332 8.02185 9.03427 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.002658 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.342409 B =10532.113465 C =11566.676226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.105 3.895 4 N -0.607 5.607 5 C 0.505 3.495 6 O -0.570 6.570 7 C -0.115 4.115 8 C -0.054 4.054 9 C 0.169 3.831 10 C -0.222 4.222 11 C 0.147 3.853 12 N -0.545 5.545 13 C 0.287 3.713 14 N -0.535 5.535 15 C 0.167 3.833 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.619 5.619 19 C -0.247 4.247 20 H 0.044 0.956 21 C -0.041 4.041 22 N -0.961 5.961 23 Si 0.953 3.047 24 H -0.279 1.279 25 H -0.309 1.309 26 H -0.252 1.252 27 C 0.127 3.873 28 C -0.136 4.136 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.170 0.830 41 H 0.199 0.801 42 H 0.217 0.783 43 H 0.103 0.897 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.261 0.739 49 H 0.043 0.957 50 H 0.043 0.957 51 H 0.068 0.932 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.851 4.680 -17.935 31.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C -0.016 4.016 4 N -0.338 5.338 5 C 0.295 3.705 6 O -0.449 6.449 7 C -0.155 4.155 8 C -0.093 4.093 9 C 0.024 3.976 10 C -0.243 4.243 11 C -0.018 4.018 12 N -0.260 5.260 13 C -0.001 4.001 14 N -0.250 5.250 15 C 0.064 3.936 16 C -0.175 4.175 17 C 0.023 3.977 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.062 0.938 21 C -0.235 4.235 22 N -0.607 5.607 23 Si 0.781 3.219 24 H -0.206 1.206 25 H -0.238 1.238 26 H -0.176 1.176 27 C 0.001 3.999 28 C -0.176 4.176 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.187 0.813 41 H 0.215 0.785 42 H 0.233 0.767 43 H 0.121 0.879 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.087 0.913 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.792 3.925 -18.043 31.720 hybrid contribution 1.276 -0.276 0.771 1.516 sum -24.516 3.649 -17.271 30.210 Atomic orbital electron populations 1.21654 0.93564 1.02255 1.02677 1.21948 0.97321 0.96789 1.02018 1.21961 0.77110 0.97549 1.05004 1.48250 1.07709 1.72842 1.05000 1.21160 0.87709 0.75241 0.86431 1.90750 1.16003 1.50399 1.87797 1.21536 0.98551 1.06069 0.89359 1.20278 0.96286 1.04548 0.88147 1.21750 0.90838 0.89272 0.95778 1.23093 1.03630 1.01801 0.95819 1.23794 0.87898 0.94232 0.95878 1.68480 1.18949 1.04954 1.33588 1.25454 0.95305 0.95344 0.83951 1.68243 1.08399 1.25343 1.23042 1.20824 0.93067 0.94032 0.85692 1.22248 0.99037 0.97606 0.98627 1.21059 0.94326 0.87193 0.95107 1.44448 1.05417 1.01720 1.82777 1.18842 0.83614 1.05979 1.29278 0.93783 1.25971 0.96519 1.00494 1.00520 1.69995 1.12756 1.32122 1.45858 0.85807 0.78937 0.78921 0.78221 1.20575 1.23824 1.17615 1.21332 0.94407 0.88419 0.95712 1.22249 0.99032 0.98114 0.98221 0.91595 0.92597 0.91859 0.92439 0.92729 0.88677 0.88336 0.86946 0.87271 0.90658 0.88813 0.81276 0.78463 0.76711 0.87909 0.92991 0.89947 0.93535 0.93041 0.93014 0.93943 0.93889 0.91325 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.14 -2.01 6.26 30.60 0.19 -1.82 16 3 C 0.11 1.48 5.18 86.38 0.45 1.92 16 4 N -0.61 -14.03 2.42 -797.68 -1.93 -15.97 16 5 C 0.51 13.38 7.10 87.66 0.62 14.00 16 6 O -0.57 -21.20 12.22 -3.04 -0.04 -21.24 16 7 C -0.12 -2.07 4.12 29.85 0.12 -1.95 16 8 C -0.05 -1.06 4.94 29.85 0.15 -0.91 16 9 C 0.17 2.93 6.21 42.58 0.26 3.20 16 10 C -0.22 -2.89 9.80 22.44 0.22 -2.67 16 11 C 0.15 1.80 11.30 84.70 0.96 2.76 16 12 N -0.55 -8.80 10.44 -200.05 -2.09 -10.88 16 13 C 0.29 4.50 12.29 180.88 2.22 6.72 16 14 N -0.54 -9.83 10.03 -188.07 -1.89 -11.72 16 15 C 0.17 4.92 2.51 45.02 0.11 5.03 16 16 C -0.14 -4.54 5.27 30.67 0.16 -4.38 16 17 C 0.15 5.89 6.52 86.36 0.56 6.45 16 18 N -0.62 -30.71 2.77 -699.11 -1.94 -32.65 16 19 C -0.25 -14.92 10.03 84.04 0.84 -14.07 16 20 H 0.04 2.93 8.06 -2.91 -0.02 2.90 16 21 C -0.04 -2.51 5.23 84.86 0.44 -2.07 16 22 N -0.96 -63.40 13.97 21.65 0.30 -63.10 16 23 Si 0.95 48.24 24.35 68.60 1.67 49.91 16 24 H -0.28 -13.51 6.62 99.48 0.66 -12.85 16 25 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 26 H -0.25 -11.85 6.63 99.48 0.66 -11.19 16 27 C 0.13 5.63 4.20 86.36 0.36 5.99 16 28 C -0.14 -5.10 5.27 30.67 0.16 -4.94 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.92 7.22 -2.39 -0.02 0.90 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.08 7.92 -2.39 -0.02 1.07 16 35 H 0.10 0.97 6.44 -2.39 -0.02 0.95 16 36 H 0.11 1.47 7.40 -2.39 -0.02 1.45 16 37 H 0.11 1.85 7.02 -2.39 -0.02 1.84 16 38 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 39 H 0.09 1.79 7.90 -2.39 -0.02 1.77 16 40 H 0.17 1.41 8.01 -2.91 -0.02 1.38 16 41 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.10 2.55 7.79 -2.39 -0.02 2.53 16 44 H 0.05 2.15 6.21 -2.39 -0.01 2.13 16 45 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 48 H 0.26 16.29 8.31 -92.71 -0.77 15.51 16 49 H 0.04 1.72 7.07 -2.38 -0.02 1.71 16 50 H 0.04 2.16 4.50 -2.39 -0.01 2.15 16 51 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 52 H 0.05 2.35 6.21 -2.38 -0.01 2.34 16 Total: -1.00 -81.52 401.90 3.46 -78.07 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.81 Total: 15.05 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 8.56 Total: 12.53 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -7.54 Total: -134.32 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.67 Total: 49.91 kcal Total: -81.52 3.46 -78.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713101666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.799 kcal (2) G-P(sol) polarization free energy of solvation -81.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds