Wall clock time and date at job start Wed Apr 1 2020 04:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 N 1.46497 * 109.46866 * 180.02562 * 3 2 1 5 5 N 1.39937 * 125.75399 * 269.99543 * 4 3 2 6 6 C 1.30441 * 108.90182 * 179.74133 * 5 4 3 7 7 C 1.41292 * 108.02021 * 0.40563 * 6 5 4 8 8 C 1.47427 * 126.41371 * 179.85585 * 7 6 5 9 9 O 1.21602 * 119.99987 * 232.54945 * 8 7 6 10 10 N 1.34781 * 119.99833 * 52.55554 * 8 7 6 11 11 C 1.47421 * 125.65247 * 4.79238 * 10 8 7 12 12 C 1.54902 * 104.83326 * 155.89395 * 11 10 8 13 13 C 1.55156 * 101.58454 * 37.01071 * 12 11 10 14 14 C 1.47028 * 125.64629 * 184.82192 * 10 8 7 15 15 H 1.09004 * 110.00705 * 300.52688 * 14 10 8 16 16 C 1.53004 * 109.88407 * 61.61668 * 14 10 8 17 17 N 1.46495 * 109.47025 * 180.85132 * 16 14 10 18 18 C 1.36935 * 120.00097 * 175.13986 * 17 16 14 19 19 H 1.08006 * 119.99778 * 5.56595 * 18 17 16 20 20 C 1.38808 * 120.00512 * 185.57022 * 18 17 16 21 21 N 1.31625 * 119.99891 * 5.81752 * 20 18 17 22 22 Si 1.86797 * 120.00577 * 185.82059 * 20 18 17 23 23 H 1.48490 * 109.47428 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46983 * 300.00210 * 22 20 18 25 25 H 1.48503 * 109.46935 * 59.99689 * 22 20 18 26 26 C 1.34261 * 125.75811 * 90.00048 * 4 3 2 27 27 C 1.50696 * 126.29044 * 0.02562 * 26 4 3 28 28 C 1.53001 * 117.49919 * 196.13047 * 27 26 4 29 29 C 1.52999 * 59.99972 * 252.51383 * 28 27 26 30 30 H 1.08997 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47229 * 300.00507 * 1 2 3 32 32 H 1.09000 * 109.46832 * 60.00145 * 1 2 3 33 33 H 1.09002 * 109.47229 * 239.99493 * 2 1 3 34 34 H 1.09000 * 109.46832 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.47413 * 60.00121 * 3 2 1 36 36 H 1.09000 * 109.46593 * 299.99697 * 3 2 1 37 37 H 1.08003 * 125.99113 * 180.26245 * 6 5 4 38 38 H 1.09004 * 110.36298 * 37.05333 * 11 10 8 39 39 H 1.08997 * 110.46111 * 274.78463 * 11 10 8 40 40 H 1.09004 * 111.00426 * 278.93521 * 12 11 10 41 41 H 1.09002 * 111.00510 * 155.08482 * 12 11 10 42 42 H 1.08998 * 110.72489 * 206.13734 * 13 12 11 43 43 H 1.09003 * 110.71898 * 82.85500 * 13 12 11 44 44 H 1.09000 * 109.46698 * 60.84830 * 16 14 10 45 45 H 1.08999 * 109.47002 * 300.85274 * 16 14 10 46 46 H 0.97003 * 120.00255 * 355.12880 * 17 16 14 47 47 H 0.97003 * 119.99631 * 355.00616 * 21 20 18 48 48 H 1.08995 * 115.54900 * 341.84711 * 27 26 4 49 49 H 1.08993 * 117.49958 * 0.02562 * 28 27 26 50 50 H 1.09003 * 117.49781 * 145.02350 * 28 27 26 51 51 H 1.09004 * 117.49905 * 252.50882 * 29 28 27 52 52 H 1.09006 * 117.49910 * 107.49467 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.3231 1.4423 1.1347 6 6 5.5714 1.4367 0.7560 7 6 5.5996 1.4425 -0.6566 8 6 6.8033 1.4421 -1.5079 9 8 6.9327 2.2813 -2.3783 10 7 7.7602 0.5114 -1.3214 11 6 7.6882 -0.6178 -0.3765 12 6 8.6576 -1.6796 -0.9527 13 6 9.8008 -0.7893 -1.5076 14 6 9.0492 0.4547 -2.0264 15 1 8.8835 0.3666 -3.1002 16 6 9.8620 1.7160 -1.7273 17 7 11.1350 1.6594 -2.4499 18 6 11.9902 2.7283 -2.4151 19 1 11.7692 3.5764 -1.7838 20 6 13.1412 2.7220 -3.1910 21 7 13.3538 1.7432 -4.0450 22 14 14.3884 4.1025 -3.0233 23 1 15.5198 3.8632 -3.9547 24 1 13.7406 5.3975 -3.3529 25 1 14.8963 4.1439 -1.6285 26 6 4.2891 1.4425 -1.0905 27 6 3.8241 1.4433 -2.5239 28 6 4.8460 1.0663 -3.5983 29 6 4.3925 2.5201 -3.4504 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6768 1.9564 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 6.4324 1.4311 1.4080 38 1 6.6733 -1.0134 -0.3349 39 1 8.0137 -0.3056 0.6158 40 1 8.1830 -2.2492 -1.7519 41 1 9.0237 -2.3414 -0.1678 42 1 10.3212 -1.2930 -2.3222 43 1 10.4966 -0.5163 -0.7142 44 1 10.0544 1.7787 -0.6563 45 1 9.3011 2.5940 -2.0476 46 1 11.3724 0.8646 -2.9529 47 1 12.7437 0.9899 -4.0809 48 1 2.7900 1.1375 -2.6828 49 1 5.8545 0.8173 -3.2684 50 1 4.4843 0.5120 -4.4644 51 1 3.7326 2.9222 -4.2191 52 1 5.1030 3.2279 -3.0231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714353851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:20 Heat of formation + Delta-G solvation = 84.201691 kcal Electronic energy + Delta-G solvation = -31499.116352 eV Core-core repulsion = 27501.639493 eV Total energy + Delta-G solvation = -3997.476859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.78681 -39.75258 -37.72921 -36.63482 -35.77644 -34.70719 -32.17935 -31.53090 -31.26511 -30.01031 -28.47517 -26.86491 -24.95768 -24.20797 -23.10283 -22.61285 -22.38108 -22.23188 -21.51437 -20.88203 -19.60154 -18.70406 -17.68177 -17.16157 -16.66011 -16.32729 -15.60400 -15.42096 -15.14964 -15.03847 -14.63621 -14.30152 -14.15549 -13.76443 -13.64095 -13.54578 -13.50001 -13.26968 -12.95152 -12.76601 -12.65716 -12.53905 -12.18169 -11.91050 -11.84901 -11.61808 -11.43526 -11.31631 -11.14234 -11.13739 -10.99359 -10.73978 -10.59927 -10.54757 -10.48952 -10.33869 -9.93657 -9.61111 -9.43222 -9.18382 -8.72796 -8.62144 -8.36364 -6.91062 -6.02013 -3.01230 1.40969 2.08142 2.20596 3.03123 3.24504 3.57800 3.61695 3.78784 3.78980 4.08892 4.15112 4.32211 4.50429 4.61414 4.62847 4.63880 4.70865 4.76202 4.76746 4.88161 4.93520 4.98278 5.02119 5.12822 5.17654 5.34625 5.39805 5.43900 5.45555 5.49763 5.57729 5.61548 5.63465 5.67990 5.68746 5.78614 5.79271 5.93576 5.94955 6.04376 6.06800 6.14855 6.25851 6.28877 6.39104 6.56599 6.65326 6.83139 6.98754 7.42657 7.73224 7.91091 8.41655 8.84127 9.31786 10.17197 10.33018 11.46266 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.002547 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.566532 B =10992.316221 C =11422.673337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.129 3.871 4 N -0.359 5.359 5 N -0.297 5.297 6 C 0.086 3.914 7 C -0.283 4.283 8 C 0.608 3.392 9 O -0.524 6.524 10 N -0.606 5.606 11 C 0.105 3.895 12 C -0.134 4.134 13 C -0.123 4.123 14 C 0.131 3.869 15 H 0.075 0.925 16 C 0.152 3.848 17 N -0.739 5.739 18 C -0.324 4.324 19 H 0.063 0.937 20 C -0.047 4.047 21 N -0.945 5.945 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.296 1.296 26 C 0.177 3.823 27 C -0.127 4.127 28 C -0.158 4.158 29 C -0.145 4.145 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.188 0.812 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.015 0.985 45 H 0.038 0.962 46 H 0.366 0.634 47 H 0.254 0.746 48 H 0.115 0.885 49 H 0.112 0.888 50 H 0.097 0.903 51 H 0.096 0.904 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.782 -8.146 8.490 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.008 3.992 4 N -0.138 5.138 5 N -0.116 5.116 6 C -0.101 4.101 7 C -0.298 4.298 8 C 0.397 3.603 9 O -0.401 6.401 10 N -0.340 5.340 11 C -0.018 4.018 12 C -0.172 4.172 13 C -0.161 4.161 14 C 0.028 3.972 15 H 0.093 0.907 16 C 0.024 3.976 17 N -0.385 5.385 18 C -0.455 4.455 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.591 5.591 22 Si 0.911 3.089 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.224 1.224 26 C 0.046 3.954 27 C -0.147 4.147 28 C -0.196 4.196 29 C -0.182 4.182 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.205 0.795 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.033 0.967 45 H 0.056 0.944 46 H 0.199 0.801 47 H 0.065 0.935 48 H 0.133 0.867 49 H 0.130 0.870 50 H 0.115 0.885 51 H 0.115 0.885 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.366 -6.794 8.588 28.549 hybrid contribution -0.929 -0.879 0.052 1.280 sum -27.294 -7.673 8.640 29.640 Atomic orbital electron populations 1.21697 0.94128 1.02609 1.02291 1.21944 0.96797 0.95643 1.03581 1.21855 0.73895 0.98667 1.04739 1.48327 1.06450 1.55999 1.03018 1.77161 1.01708 1.25494 1.07269 1.23916 0.95188 0.97533 0.93436 1.19874 0.92523 1.23477 0.93885 1.16809 0.80957 0.80106 0.82428 1.90811 1.78121 1.37423 1.33711 1.48387 1.17178 1.27274 1.41131 1.22255 0.99981 0.86595 0.93009 1.22789 0.96441 0.97002 1.00929 1.22679 0.97061 0.94424 1.01913 1.21810 0.82084 0.96665 0.96613 0.90672 1.20875 0.87027 0.94677 0.95001 1.42211 1.17397 1.17717 1.61147 1.20018 1.02990 0.97960 1.24568 0.91933 1.25767 0.98815 1.04363 0.95446 1.70874 1.41499 1.10824 1.35951 0.83242 0.75960 0.74254 0.75459 1.21082 1.22268 1.22364 1.20432 0.89507 0.96439 0.89020 1.20529 0.99178 1.09673 0.85303 1.23268 0.99485 0.98881 0.97935 1.23230 1.02461 0.92973 0.99576 0.91852 0.92182 0.92268 0.91246 0.90790 0.88380 0.88770 0.79528 0.91030 0.91513 0.90874 0.90006 0.90053 0.89891 0.96719 0.94393 0.80128 0.93492 0.86721 0.87032 0.88490 0.88543 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.14 -0.84 6.26 -26.73 -0.17 -1.01 16 3 C 0.13 0.92 6.12 -4.04 -0.02 0.89 16 4 N -0.36 -3.94 3.58 -56.61 -0.20 -4.14 16 5 N -0.30 -3.74 12.50 30.86 0.39 -3.35 16 6 C 0.09 1.08 11.25 -16.98 -0.19 0.89 16 7 C -0.28 -3.93 5.05 -105.07 -0.53 -4.46 16 8 C 0.61 9.87 5.15 -12.52 -0.06 9.81 16 9 O -0.52 -10.21 11.97 5.28 0.06 -10.15 16 10 N -0.61 -9.11 3.07 -164.27 -0.50 -9.61 16 11 C 0.10 1.20 6.03 -2.53 -0.02 1.18 16 12 C -0.13 -1.44 7.08 -24.59 -0.17 -1.61 16 13 C -0.12 -1.78 5.88 -24.90 -0.15 -1.92 16 14 C 0.13 2.29 2.98 -66.95 -0.20 2.09 16 15 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.15 3.39 5.61 -4.04 -0.02 3.37 16 17 N -0.74 -19.44 5.39 -59.91 -0.32 -19.76 16 18 C -0.32 -9.60 9.98 -15.06 -0.15 -9.75 16 19 H 0.06 1.85 7.84 -52.48 -0.41 1.44 16 20 C -0.05 -1.41 5.50 -17.43 -0.10 -1.50 16 21 N -0.95 -29.89 13.69 55.49 0.76 -29.13 16 22 Si 1.08 26.86 29.92 -169.99 -5.09 21.77 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.30 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.18 2.17 6.66 -81.60 -0.54 1.62 16 27 C -0.13 -1.33 5.79 -91.77 -0.53 -1.87 16 28 C -0.16 -1.91 9.45 -26.73 -0.25 -2.16 16 29 C -0.14 -1.72 9.58 -26.73 -0.26 -1.97 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.52 7.49 -51.93 -0.39 0.13 16 37 H 0.19 1.96 8.06 -52.48 -0.42 1.53 16 38 H 0.07 0.75 7.78 -51.93 -0.40 0.34 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 44 H 0.02 0.34 8.11 -51.93 -0.42 -0.08 16 45 H 0.04 0.95 6.98 -51.93 -0.36 0.59 16 46 H 0.37 9.57 6.21 -40.82 -0.25 9.32 16 47 H 0.25 7.87 6.82 -40.82 -0.28 7.59 16 48 H 0.11 0.89 7.64 -51.93 -0.40 0.50 16 49 H 0.11 1.68 4.50 -51.93 -0.23 1.44 16 50 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 52 H 0.12 1.81 6.38 -51.93 -0.33 1.48 16 LS Contribution 411.20 15.07 6.20 6.20 Total: -1.00 -35.92 411.20 -10.31 -46.23 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.60 Total: 8.57 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.00 Total: -6.62 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: 0.12 Total: -65.99 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.06 Total: -10.15 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -5.09 Total: 21.77 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.92 -10.31 -46.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.428 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds