Wall clock time and date at job start Wed Apr 1 2020 04:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 N 1.46497 * 109.46866 * 180.02562 * 3 2 1 5 5 N 1.39937 * 125.75399 * 269.99543 * 4 3 2 6 6 C 1.30441 * 108.90182 * 179.74133 * 5 4 3 7 7 C 1.41292 * 108.02021 * 0.40563 * 6 5 4 8 8 C 1.47427 * 126.41371 * 179.85585 * 7 6 5 9 9 O 1.21602 * 119.99987 * 232.54945 * 8 7 6 10 10 N 1.34781 * 119.99833 * 52.55554 * 8 7 6 11 11 C 1.47421 * 125.65247 * 4.79238 * 10 8 7 12 12 C 1.54902 * 104.83326 * 155.89395 * 11 10 8 13 13 C 1.55156 * 101.58454 * 37.01071 * 12 11 10 14 14 C 1.47028 * 125.64629 * 184.82192 * 10 8 7 15 15 H 1.09004 * 110.00705 * 300.52688 * 14 10 8 16 16 C 1.53004 * 109.88407 * 61.61668 * 14 10 8 17 17 N 1.46495 * 109.47025 * 180.85132 * 16 14 10 18 18 C 1.36935 * 120.00097 * 175.13986 * 17 16 14 19 19 H 1.08006 * 119.99778 * 5.56595 * 18 17 16 20 20 C 1.38808 * 120.00512 * 185.57022 * 18 17 16 21 21 N 1.31625 * 119.99891 * 5.81752 * 20 18 17 22 22 Si 1.86797 * 120.00577 * 185.82059 * 20 18 17 23 23 H 1.48490 * 109.47428 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46983 * 300.00210 * 22 20 18 25 25 H 1.48503 * 109.46935 * 59.99689 * 22 20 18 26 26 C 1.34261 * 125.75811 * 90.00048 * 4 3 2 27 27 C 1.50696 * 126.29044 * 0.02562 * 26 4 3 28 28 C 1.53001 * 117.49919 * 196.13047 * 27 26 4 29 29 C 1.52999 * 59.99972 * 252.51383 * 28 27 26 30 30 H 1.08997 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47229 * 300.00507 * 1 2 3 32 32 H 1.09000 * 109.46832 * 60.00145 * 1 2 3 33 33 H 1.09002 * 109.47229 * 239.99493 * 2 1 3 34 34 H 1.09000 * 109.46832 * 119.99855 * 2 1 3 35 35 H 1.08997 * 109.47413 * 60.00121 * 3 2 1 36 36 H 1.09000 * 109.46593 * 299.99697 * 3 2 1 37 37 H 1.08003 * 125.99113 * 180.26245 * 6 5 4 38 38 H 1.09004 * 110.36298 * 37.05333 * 11 10 8 39 39 H 1.08997 * 110.46111 * 274.78463 * 11 10 8 40 40 H 1.09004 * 111.00426 * 278.93521 * 12 11 10 41 41 H 1.09002 * 111.00510 * 155.08482 * 12 11 10 42 42 H 1.08998 * 110.72489 * 206.13734 * 13 12 11 43 43 H 1.09003 * 110.71898 * 82.85500 * 13 12 11 44 44 H 1.09000 * 109.46698 * 60.84830 * 16 14 10 45 45 H 1.08999 * 109.47002 * 300.85274 * 16 14 10 46 46 H 0.97003 * 120.00255 * 355.12880 * 17 16 14 47 47 H 0.97003 * 119.99631 * 355.00616 * 21 20 18 48 48 H 1.08995 * 115.54900 * 341.84711 * 27 26 4 49 49 H 1.08993 * 117.49958 * 0.02562 * 28 27 26 50 50 H 1.09003 * 117.49781 * 145.02350 * 28 27 26 51 51 H 1.09004 * 117.49905 * 252.50882 * 29 28 27 52 52 H 1.09006 * 117.49910 * 107.49467 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.3231 1.4423 1.1347 6 6 5.5714 1.4367 0.7560 7 6 5.5996 1.4425 -0.6566 8 6 6.8033 1.4421 -1.5079 9 8 6.9327 2.2813 -2.3783 10 7 7.7602 0.5114 -1.3214 11 6 7.6882 -0.6178 -0.3765 12 6 8.6576 -1.6796 -0.9527 13 6 9.8008 -0.7893 -1.5076 14 6 9.0492 0.4547 -2.0264 15 1 8.8835 0.3666 -3.1002 16 6 9.8620 1.7160 -1.7273 17 7 11.1350 1.6594 -2.4499 18 6 11.9902 2.7283 -2.4151 19 1 11.7692 3.5764 -1.7838 20 6 13.1412 2.7220 -3.1910 21 7 13.3538 1.7432 -4.0450 22 14 14.3884 4.1025 -3.0233 23 1 15.5198 3.8632 -3.9547 24 1 13.7406 5.3975 -3.3529 25 1 14.8963 4.1439 -1.6285 26 6 4.2891 1.4425 -1.0905 27 6 3.8241 1.4433 -2.5239 28 6 4.8460 1.0663 -3.5983 29 6 4.3925 2.5201 -3.4504 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6768 1.9564 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 6.4324 1.4311 1.4080 38 1 6.6733 -1.0134 -0.3349 39 1 8.0137 -0.3056 0.6158 40 1 8.1830 -2.2492 -1.7519 41 1 9.0237 -2.3414 -0.1678 42 1 10.3212 -1.2930 -2.3222 43 1 10.4966 -0.5163 -0.7142 44 1 10.0544 1.7787 -0.6563 45 1 9.3011 2.5940 -2.0476 46 1 11.3724 0.8646 -2.9529 47 1 12.7437 0.9899 -4.0809 48 1 2.7900 1.1375 -2.6828 49 1 5.8545 0.8173 -3.2684 50 1 4.4843 0.5120 -4.4644 51 1 3.7326 2.9222 -4.2191 52 1 5.1030 3.2279 -3.0231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714353851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:19 Heat of formation + Delta-G solvation = 61.796881 kcal Electronic energy + Delta-G solvation = -31500.087897 eV Core-core repulsion = 27501.639493 eV Total energy + Delta-G solvation = -3998.448404 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.74580 -40.97642 -38.89463 -37.69089 -36.72688 -36.37610 -33.61860 -32.84469 -32.38154 -31.05548 -30.06874 -27.54482 -26.55025 -25.49539 -24.65369 -23.79211 -23.40198 -23.02026 -22.48247 -21.91772 -20.72782 -19.90015 -19.33840 -18.57501 -17.88670 -17.42702 -16.86992 -16.34146 -16.03678 -15.87327 -15.82089 -15.72056 -15.51415 -15.30751 -15.05262 -14.95654 -14.71178 -14.18948 -14.11012 -13.84141 -13.68168 -13.24584 -13.13358 -13.02564 -12.80302 -12.68113 -12.59332 -12.34201 -12.29984 -12.17883 -12.14714 -11.97267 -11.90008 -11.88887 -11.74017 -11.70016 -11.39182 -11.37918 -10.94946 -10.84845 -10.28626 -9.74125 -9.55204 -9.16256 -8.43706 -5.38028 0.44579 1.16061 1.27694 1.56127 1.66522 1.83631 1.85667 2.05944 2.69491 2.89315 3.27296 3.32870 3.35257 3.55613 3.57706 3.76948 3.83394 3.84387 3.88942 3.93087 3.95077 4.01367 4.07551 4.20637 4.23551 4.27175 4.36152 4.44098 4.47151 4.51441 4.63584 4.67680 4.74152 4.78404 4.79828 4.86593 4.91245 4.94328 5.06176 5.07231 5.08945 5.11903 5.13204 5.26610 5.28998 5.33044 5.34789 5.43581 5.54553 5.83527 6.46650 6.48315 6.53892 7.04652 7.18135 7.93607 8.06726 9.07694 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.002547 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.566532 B =10992.316221 C =11422.673337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.119 3.881 4 N -0.350 5.350 5 N -0.309 5.309 6 C 0.085 3.915 7 C -0.306 4.306 8 C 0.607 3.393 9 O -0.568 6.568 10 N -0.604 5.604 11 C 0.102 3.898 12 C -0.117 4.117 13 C -0.119 4.119 14 C 0.141 3.859 15 H 0.052 0.948 16 C 0.161 3.839 17 N -0.746 5.746 18 C -0.338 4.338 19 H 0.056 0.944 20 C -0.099 4.099 21 N -0.969 5.969 22 Si 1.129 2.871 23 H -0.287 1.287 24 H -0.282 1.282 25 H -0.275 1.275 26 C 0.175 3.825 27 C -0.107 4.107 28 C -0.169 4.169 29 C -0.152 4.152 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.201 0.799 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.015 0.985 45 H 0.003 0.997 46 H 0.365 0.635 47 H 0.245 0.755 48 H 0.153 0.847 49 H 0.078 0.922 50 H 0.120 0.880 51 H 0.124 0.876 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.023 -9.193 9.605 31.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.001 4.001 4 N -0.129 5.129 5 N -0.128 5.128 6 C -0.102 4.102 7 C -0.321 4.321 8 C 0.397 3.603 9 O -0.448 6.448 10 N -0.337 5.337 11 C -0.020 4.020 12 C -0.154 4.154 13 C -0.157 4.157 14 C 0.037 3.963 15 H 0.070 0.930 16 C 0.034 3.966 17 N -0.391 5.391 18 C -0.470 4.470 19 H 0.074 0.926 20 C -0.291 4.291 21 N -0.616 5.616 22 Si 0.953 3.047 23 H -0.212 1.212 24 H -0.209 1.209 25 H -0.201 1.201 26 C 0.043 3.957 27 C -0.126 4.126 28 C -0.207 4.207 29 C -0.190 4.190 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.218 0.782 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.033 0.967 45 H 0.021 0.979 46 H 0.197 0.803 47 H 0.055 0.945 48 H 0.171 0.829 49 H 0.096 0.904 50 H 0.138 0.862 51 H 0.142 0.858 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -28.667 -7.878 9.764 31.292 hybrid contribution -0.319 -0.523 -0.277 0.672 sum -28.986 -8.401 9.487 31.635 Atomic orbital electron populations 1.21679 0.92461 1.03087 1.03092 1.21868 0.98058 0.94431 1.02774 1.22286 0.71589 0.99931 1.06262 1.48647 1.07647 1.54486 1.02103 1.77122 1.01786 1.25752 1.08167 1.24119 0.95784 0.97311 0.92974 1.19780 0.92265 1.25761 0.94254 1.17220 0.81588 0.79462 0.82017 1.90789 1.79097 1.39193 1.35681 1.48447 1.15802 1.28116 1.41380 1.22515 1.01306 0.85449 0.92699 1.22793 0.94280 0.96456 1.01913 1.22596 0.97867 0.93665 1.01557 1.21504 0.83163 0.95704 0.95929 0.92985 1.20827 0.85729 0.96022 0.94071 1.42311 1.18411 1.17020 1.61394 1.20315 1.03757 0.98544 1.24339 0.92559 1.27284 1.00847 1.06059 0.94878 1.70980 1.41790 1.11451 1.37378 0.82628 0.73703 0.71953 0.76419 1.21231 1.20862 1.20083 1.20681 0.89270 0.95633 0.90150 1.20683 1.00369 1.07813 0.83755 1.23207 0.98514 0.99346 0.99593 1.23143 1.02575 0.92375 1.00864 0.91559 0.91775 0.91110 0.91445 0.92223 0.87597 0.86593 0.78203 0.89363 0.90149 0.89809 0.86915 0.90190 0.90940 0.96706 0.97930 0.80276 0.94476 0.82927 0.90372 0.86174 0.85804 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 71.98 0.71 -0.03 16 2 C -0.13 -1.23 6.26 30.60 0.19 -1.04 16 3 C 0.12 1.36 6.12 86.38 0.53 1.89 16 4 N -0.35 -7.06 3.58 -333.01 -1.19 -8.25 16 5 N -0.31 -7.37 12.50 -56.27 -0.70 -8.08 16 6 C 0.08 2.07 11.25 85.65 0.96 3.04 16 7 C -0.31 -8.50 5.05 -20.15 -0.10 -8.60 16 8 C 0.61 20.58 5.15 86.66 0.45 21.02 16 9 O -0.57 -23.84 11.97 -4.04 -0.05 -23.89 16 10 N -0.60 -18.62 3.07 -791.89 -2.43 -21.05 16 11 C 0.10 2.18 6.03 86.85 0.52 2.70 16 12 C -0.12 -2.26 7.08 31.98 0.23 -2.03 16 13 C -0.12 -3.43 5.88 31.78 0.19 -3.25 16 14 C 0.14 5.16 2.98 45.34 0.14 5.29 16 15 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 16 C 0.16 7.58 5.61 86.38 0.48 8.06 16 17 N -0.75 -40.96 5.39 -343.46 -1.85 -42.81 16 18 C -0.34 -20.59 9.98 84.03 0.84 -19.76 16 19 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 20 C -0.10 -6.04 5.50 84.86 0.47 -5.58 16 21 N -0.97 -62.38 13.69 21.65 0.30 -62.08 16 22 Si 1.13 54.33 29.92 68.60 2.05 56.39 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 26 C 0.18 4.11 6.66 42.14 0.28 4.39 16 27 C -0.11 -2.06 5.79 -11.54 -0.07 -2.13 16 28 C -0.17 -4.03 9.45 30.59 0.29 -3.74 16 29 C -0.15 -3.57 9.58 30.59 0.29 -3.28 16 30 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.12 0.85 7.49 -2.39 -0.02 0.84 16 37 H 0.20 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.09 1.65 7.78 -2.39 -0.02 1.63 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.07 2.26 7.83 -2.39 -0.02 2.24 16 44 H 0.02 0.70 8.11 -2.39 -0.02 0.69 16 45 H 0.00 0.14 6.98 -2.39 -0.02 0.12 16 46 H 0.36 19.96 6.21 -92.71 -0.58 19.39 16 47 H 0.24 15.66 6.82 -92.71 -0.63 15.03 16 48 H 0.15 1.77 7.64 -2.39 -0.02 1.75 16 49 H 0.08 2.45 4.50 -2.39 -0.01 2.44 16 50 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.08 2.62 6.38 -2.38 -0.02 2.61 16 Total: -1.00 -81.90 411.20 3.01 -78.89 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.48 Total: 33.92 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 6.40 Total: -3.04 kcal Atomic # 7 Polarization: -136.39 SS G_CDS: -5.88 Total: -142.27 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 54.33 SS G_CDS: 2.05 Total: 56.39 kcal Total: -81.90 3.01 -78.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714353851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.691 kcal (2) G-P(sol) polarization free energy of solvation -81.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds