Wall clock time and date at job start Wed Apr 1 2020 04:17:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53000 * 109.47181 * 2 1
4 4 N 1.46497 * 109.46866 * 180.02562 * 3 2 1
5 5 N 1.39937 * 125.75399 * 269.99543 * 4 3 2
6 6 C 1.30441 * 108.90182 * 179.74133 * 5 4 3
7 7 C 1.41292 * 108.02021 * 0.40563 * 6 5 4
8 8 C 1.47427 * 126.41371 * 179.85585 * 7 6 5
9 9 O 1.21602 * 119.99987 * 232.54945 * 8 7 6
10 10 N 1.34781 * 119.99833 * 52.55554 * 8 7 6
11 11 C 1.47421 * 125.65247 * 4.79238 * 10 8 7
12 12 C 1.54902 * 104.83326 * 155.89395 * 11 10 8
13 13 C 1.55156 * 101.58454 * 37.01071 * 12 11 10
14 14 C 1.47028 * 125.64629 * 184.82192 * 10 8 7
15 15 H 1.09004 * 110.00705 * 300.52688 * 14 10 8
16 16 C 1.53004 * 109.88407 * 61.61668 * 14 10 8
17 17 N 1.46495 * 109.47025 * 180.85132 * 16 14 10
18 18 C 1.36935 * 120.00097 * 175.13986 * 17 16 14
19 19 H 1.08006 * 119.99778 * 5.56595 * 18 17 16
20 20 C 1.38808 * 120.00512 * 185.57022 * 18 17 16
21 21 N 1.31625 * 119.99891 * 5.81752 * 20 18 17
22 22 Si 1.86797 * 120.00577 * 185.82059 * 20 18 17
23 23 H 1.48490 * 109.47428 * 179.97438 * 22 20 18
24 24 H 1.48497 * 109.46983 * 300.00210 * 22 20 18
25 25 H 1.48503 * 109.46935 * 59.99689 * 22 20 18
26 26 C 1.34261 * 125.75811 * 90.00048 * 4 3 2
27 27 C 1.50696 * 126.29044 * 0.02562 * 26 4 3
28 28 C 1.53001 * 117.49919 * 196.13047 * 27 26 4
29 29 C 1.52999 * 59.99972 * 252.51383 * 28 27 26
30 30 H 1.08997 * 109.47103 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.47229 * 300.00507 * 1 2 3
32 32 H 1.09000 * 109.46832 * 60.00145 * 1 2 3
33 33 H 1.09002 * 109.47229 * 239.99493 * 2 1 3
34 34 H 1.09000 * 109.46832 * 119.99855 * 2 1 3
35 35 H 1.08997 * 109.47413 * 60.00121 * 3 2 1
36 36 H 1.09000 * 109.46593 * 299.99697 * 3 2 1
37 37 H 1.08003 * 125.99113 * 180.26245 * 6 5 4
38 38 H 1.09004 * 110.36298 * 37.05333 * 11 10 8
39 39 H 1.08997 * 110.46111 * 274.78463 * 11 10 8
40 40 H 1.09004 * 111.00426 * 278.93521 * 12 11 10
41 41 H 1.09002 * 111.00510 * 155.08482 * 12 11 10
42 42 H 1.08998 * 110.72489 * 206.13734 * 13 12 11
43 43 H 1.09003 * 110.71898 * 82.85500 * 13 12 11
44 44 H 1.09000 * 109.46698 * 60.84830 * 16 14 10
45 45 H 1.08999 * 109.47002 * 300.85274 * 16 14 10
46 46 H 0.97003 * 120.00255 * 355.12880 * 17 16 14
47 47 H 0.97003 * 119.99631 * 355.00616 * 21 20 18
48 48 H 1.08995 * 115.54900 * 341.84711 * 27 26 4
49 49 H 1.08993 * 117.49958 * 0.02562 * 28 27 26
50 50 H 1.09003 * 117.49781 * 145.02350 * 28 27 26
51 51 H 1.09004 * 117.49905 * 252.50882 * 29 28 27
52 52 H 1.09006 * 117.49910 * 107.49467 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4424 -0.0006
5 7 4.3231 1.4423 1.1347
6 6 5.5714 1.4367 0.7560
7 6 5.5996 1.4425 -0.6566
8 6 6.8033 1.4421 -1.5079
9 8 6.9327 2.2813 -2.3783
10 7 7.7602 0.5114 -1.3214
11 6 7.6882 -0.6178 -0.3765
12 6 8.6576 -1.6796 -0.9527
13 6 9.8008 -0.7893 -1.5076
14 6 9.0492 0.4547 -2.0264
15 1 8.8835 0.3666 -3.1002
16 6 9.8620 1.7160 -1.7273
17 7 11.1350 1.6594 -2.4499
18 6 11.9902 2.7283 -2.4151
19 1 11.7692 3.5764 -1.7838
20 6 13.1412 2.7220 -3.1910
21 7 13.3538 1.7432 -4.0450
22 14 14.3884 4.1025 -3.0233
23 1 15.5198 3.8632 -3.9547
24 1 13.7406 5.3975 -3.3529
25 1 14.8963 4.1439 -1.6285
26 6 4.2891 1.4425 -1.0905
27 6 3.8241 1.4433 -2.5239
28 6 4.8460 1.0663 -3.5983
29 6 4.3925 2.5201 -3.4504
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 1.8934 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 1.6768 1.9564 0.8900
36 1 1.6767 1.9562 -0.8900
37 1 6.4324 1.4311 1.4080
38 1 6.6733 -1.0134 -0.3349
39 1 8.0137 -0.3056 0.6158
40 1 8.1830 -2.2492 -1.7519
41 1 9.0237 -2.3414 -0.1678
42 1 10.3212 -1.2930 -2.3222
43 1 10.4966 -0.5163 -0.7142
44 1 10.0544 1.7787 -0.6563
45 1 9.3011 2.5940 -2.0476
46 1 11.3724 0.8646 -2.9529
47 1 12.7437 0.9899 -4.0809
48 1 2.7900 1.1375 -2.6828
49 1 5.8545 0.8173 -3.2684
50 1 4.4843 0.5120 -4.4644
51 1 3.7326 2.9222 -4.2191
52 1 5.1030 3.2279 -3.0231
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714353851.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:17:19
Heat of formation + Delta-G solvation = 61.796881 kcal
Electronic energy + Delta-G solvation = -31500.087897 eV
Core-core repulsion = 27501.639493 eV
Total energy + Delta-G solvation = -3998.448404 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-42.74580 -40.97642 -38.89463 -37.69089 -36.72688 -36.37610 -33.61860 -32.84469
-32.38154 -31.05548 -30.06874 -27.54482 -26.55025 -25.49539 -24.65369 -23.79211
-23.40198 -23.02026 -22.48247 -21.91772 -20.72782 -19.90015 -19.33840 -18.57501
-17.88670 -17.42702 -16.86992 -16.34146 -16.03678 -15.87327 -15.82089 -15.72056
-15.51415 -15.30751 -15.05262 -14.95654 -14.71178 -14.18948 -14.11012 -13.84141
-13.68168 -13.24584 -13.13358 -13.02564 -12.80302 -12.68113 -12.59332 -12.34201
-12.29984 -12.17883 -12.14714 -11.97267 -11.90008 -11.88887 -11.74017 -11.70016
-11.39182 -11.37918 -10.94946 -10.84845 -10.28626 -9.74125 -9.55204 -9.16256
-8.43706 -5.38028 0.44579 1.16061 1.27694 1.56127 1.66522 1.83631
1.85667 2.05944 2.69491 2.89315 3.27296 3.32870 3.35257 3.55613
3.57706 3.76948 3.83394 3.84387 3.88942 3.93087 3.95077 4.01367
4.07551 4.20637 4.23551 4.27175 4.36152 4.44098 4.47151 4.51441
4.63584 4.67680 4.74152 4.78404 4.79828 4.86593 4.91245 4.94328
5.06176 5.07231 5.08945 5.11903 5.13204 5.26610 5.28998 5.33044
5.34789 5.43581 5.54553 5.83527 6.46650 6.48315 6.53892 7.04652
7.18135 7.93607 8.06726 9.07694
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.017677 B = 0.002547 C = 0.002451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1583.566532 B =10992.316221 C =11422.673337
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.133 4.133
3 C 0.119 3.881
4 N -0.350 5.350
5 N -0.309 5.309
6 C 0.085 3.915
7 C -0.306 4.306
8 C 0.607 3.393
9 O -0.568 6.568
10 N -0.604 5.604
11 C 0.102 3.898
12 C -0.117 4.117
13 C -0.119 4.119
14 C 0.141 3.859
15 H 0.052 0.948
16 C 0.161 3.839
17 N -0.746 5.746
18 C -0.338 4.338
19 H 0.056 0.944
20 C -0.099 4.099
21 N -0.969 5.969
22 Si 1.129 2.871
23 H -0.287 1.287
24 H -0.282 1.282
25 H -0.275 1.275
26 C 0.175 3.825
27 C -0.107 4.107
28 C -0.169 4.169
29 C -0.152 4.152
30 H 0.065 0.935
31 H 0.063 0.937
32 H 0.070 0.930
33 H 0.067 0.933
34 H 0.059 0.941
35 H 0.106 0.894
36 H 0.116 0.884
37 H 0.201 0.799
38 H 0.088 0.912
39 H 0.080 0.920
40 H 0.083 0.917
41 H 0.113 0.887
42 H 0.079 0.921
43 H 0.072 0.928
44 H 0.015 0.985
45 H 0.003 0.997
46 H 0.365 0.635
47 H 0.245 0.755
48 H 0.153 0.847
49 H 0.078 0.922
50 H 0.120 0.880
51 H 0.124 0.876
52 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.023 -9.193 9.605 31.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.171 4.171
3 C -0.001 4.001
4 N -0.129 5.129
5 N -0.128 5.128
6 C -0.102 4.102
7 C -0.321 4.321
8 C 0.397 3.603
9 O -0.448 6.448
10 N -0.337 5.337
11 C -0.020 4.020
12 C -0.154 4.154
13 C -0.157 4.157
14 C 0.037 3.963
15 H 0.070 0.930
16 C 0.034 3.966
17 N -0.391 5.391
18 C -0.470 4.470
19 H 0.074 0.926
20 C -0.291 4.291
21 N -0.616 5.616
22 Si 0.953 3.047
23 H -0.212 1.212
24 H -0.209 1.209
25 H -0.201 1.201
26 C 0.043 3.957
27 C -0.126 4.126
28 C -0.207 4.207
29 C -0.190 4.190
30 H 0.084 0.916
31 H 0.082 0.918
32 H 0.089 0.911
33 H 0.086 0.914
34 H 0.078 0.922
35 H 0.124 0.876
36 H 0.134 0.866
37 H 0.218 0.782
38 H 0.106 0.894
39 H 0.099 0.901
40 H 0.102 0.898
41 H 0.131 0.869
42 H 0.098 0.902
43 H 0.091 0.909
44 H 0.033 0.967
45 H 0.021 0.979
46 H 0.197 0.803
47 H 0.055 0.945
48 H 0.171 0.829
49 H 0.096 0.904
50 H 0.138 0.862
51 H 0.142 0.858
52 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -28.667 -7.878 9.764 31.292
hybrid contribution -0.319 -0.523 -0.277 0.672
sum -28.986 -8.401 9.487 31.635
Atomic orbital electron populations
1.21679 0.92461 1.03087 1.03092 1.21868 0.98058 0.94431 1.02774
1.22286 0.71589 0.99931 1.06262 1.48647 1.07647 1.54486 1.02103
1.77122 1.01786 1.25752 1.08167 1.24119 0.95784 0.97311 0.92974
1.19780 0.92265 1.25761 0.94254 1.17220 0.81588 0.79462 0.82017
1.90789 1.79097 1.39193 1.35681 1.48447 1.15802 1.28116 1.41380
1.22515 1.01306 0.85449 0.92699 1.22793 0.94280 0.96456 1.01913
1.22596 0.97867 0.93665 1.01557 1.21504 0.83163 0.95704 0.95929
0.92985 1.20827 0.85729 0.96022 0.94071 1.42311 1.18411 1.17020
1.61394 1.20315 1.03757 0.98544 1.24339 0.92559 1.27284 1.00847
1.06059 0.94878 1.70980 1.41790 1.11451 1.37378 0.82628 0.73703
0.71953 0.76419 1.21231 1.20862 1.20083 1.20681 0.89270 0.95633
0.90150 1.20683 1.00369 1.07813 0.83755 1.23207 0.98514 0.99346
0.99593 1.23143 1.02575 0.92375 1.00864 0.91559 0.91775 0.91110
0.91445 0.92223 0.87597 0.86593 0.78203 0.89363 0.90149 0.89809
0.86915 0.90190 0.90940 0.96706 0.97930 0.80276 0.94476 0.82927
0.90372 0.86174 0.85804 0.89997
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.74 9.91 71.98 0.71 -0.03 16
2 C -0.13 -1.23 6.26 30.60 0.19 -1.04 16
3 C 0.12 1.36 6.12 86.38 0.53 1.89 16
4 N -0.35 -7.06 3.58 -333.01 -1.19 -8.25 16
5 N -0.31 -7.37 12.50 -56.27 -0.70 -8.08 16
6 C 0.08 2.07 11.25 85.65 0.96 3.04 16
7 C -0.31 -8.50 5.05 -20.15 -0.10 -8.60 16
8 C 0.61 20.58 5.15 86.66 0.45 21.02 16
9 O -0.57 -23.84 11.97 -4.04 -0.05 -23.89 16
10 N -0.60 -18.62 3.07 -791.89 -2.43 -21.05 16
11 C 0.10 2.18 6.03 86.85 0.52 2.70 16
12 C -0.12 -2.26 7.08 31.98 0.23 -2.03 16
13 C -0.12 -3.43 5.88 31.78 0.19 -3.25 16
14 C 0.14 5.16 2.98 45.34 0.14 5.29 16
15 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16
16 C 0.16 7.58 5.61 86.38 0.48 8.06 16
17 N -0.75 -40.96 5.39 -343.46 -1.85 -42.81 16
18 C -0.34 -20.59 9.98 84.03 0.84 -19.76 16
19 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16
20 C -0.10 -6.04 5.50 84.86 0.47 -5.58 16
21 N -0.97 -62.38 13.69 21.65 0.30 -62.08 16
22 Si 1.13 54.33 29.92 68.60 2.05 56.39 16
23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16
24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16
26 C 0.18 4.11 6.66 42.14 0.28 4.39 16
27 C -0.11 -2.06 5.79 -11.54 -0.07 -2.13 16
28 C -0.17 -4.03 9.45 30.59 0.29 -3.74 16
29 C -0.15 -3.57 9.58 30.59 0.29 -3.28 16
30 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16
31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16
32 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16
33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16
36 H 0.12 0.85 7.49 -2.39 -0.02 0.84 16
37 H 0.20 4.05 8.06 -2.91 -0.02 4.03 16
38 H 0.09 1.65 7.78 -2.39 -0.02 1.63 16
39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16
41 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16
42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16
43 H 0.07 2.26 7.83 -2.39 -0.02 2.24 16
44 H 0.02 0.70 8.11 -2.39 -0.02 0.69 16
45 H 0.00 0.14 6.98 -2.39 -0.02 0.12 16
46 H 0.36 19.96 6.21 -92.71 -0.58 19.39 16
47 H 0.24 15.66 6.82 -92.71 -0.63 15.03 16
48 H 0.15 1.77 7.64 -2.39 -0.02 1.75 16
49 H 0.08 2.45 4.50 -2.39 -0.01 2.44 16
50 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16
51 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16
52 H 0.08 2.62 6.38 -2.38 -0.02 2.61 16
Total: -1.00 -81.90 411.20 3.01 -78.89
By element:
Atomic # 1 Polarization: 33.44 SS G_CDS: 0.48 Total: 33.92 kcal
Atomic # 6 Polarization: -9.44 SS G_CDS: 6.40 Total: -3.04 kcal
Atomic # 7 Polarization: -136.39 SS G_CDS: -5.88 Total: -142.27 kcal
Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal
Atomic # 14 Polarization: 54.33 SS G_CDS: 2.05 Total: 56.39 kcal
Total: -81.90 3.01 -78.89 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714353851.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.691 kcal
(2) G-P(sol) polarization free energy of solvation -81.900 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.797 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds