Wall clock time and date at job start Wed Apr 1 2020 04:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47385 * 2 1 4 4 N 1.46499 * 109.47420 * 180.02562 * 3 2 1 5 5 C 1.34771 * 119.99888 * 276.77236 * 4 3 2 6 6 O 1.21576 * 120.00086 * 175.34295 * 5 4 3 7 7 C 1.47712 * 120.00163 * 355.34076 * 5 4 3 8 8 N 1.31839 * 126.57171 * 5.50327 * 7 5 4 9 9 N 1.28460 * 110.06181 * 179.82384 * 8 7 5 10 10 H 0.96993 * 124.88817 * 180.22550 * 9 8 7 11 11 C 1.35256 * 110.22896 * 0.46208 * 9 8 7 12 12 C 1.35055 * 107.07869 * 359.71007 * 11 9 8 13 13 C 1.50933 * 110.53101 * 180.02562 * 12 11 9 14 14 C 1.54519 * 104.96883 * 16.76937 * 13 12 11 15 15 C 1.51234 * 142.77169 * 179.71371 * 11 9 8 16 16 C 1.46504 * 120.00224 * 96.76565 * 4 3 2 17 17 C 1.53042 * 109.46004 * 240.00469 * 16 4 3 18 18 C 1.53200 * 109.30592 * 178.61276 * 17 16 4 19 19 N 1.46922 * 108.89495 * 54.56643 * 18 17 16 20 20 C 1.36934 * 120.63389 * 126.45795 * 19 18 17 21 21 H 1.08005 * 119.99794 * 324.28159 * 20 19 18 22 22 C 1.38807 * 120.00205 * 144.28782 * 20 19 18 23 23 N 1.31622 * 120.00206 * 3.01204 * 22 20 19 24 24 Si 1.86796 * 120.00267 * 183.01538 * 22 20 19 25 25 H 1.48504 * 109.47283 * 89.99635 * 24 22 20 26 26 H 1.48506 * 109.47399 * 209.99643 * 24 22 20 27 27 H 1.48501 * 109.47213 * 329.99833 * 24 22 20 28 28 C 1.46968 * 118.71074 * 306.63513 * 19 18 17 29 29 C 1.53031 * 109.45753 * 119.93229 * 16 4 3 30 30 H 1.09003 * 109.46797 * 299.99958 * 1 2 3 31 31 H 1.09000 * 109.46934 * 59.99733 * 1 2 3 32 32 H 1.09000 * 109.47118 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47139 * 239.99756 * 2 1 3 34 34 H 1.09000 * 109.47675 * 120.00341 * 2 1 3 35 35 H 1.08994 * 109.47028 * 59.99919 * 3 2 1 36 36 H 1.09001 * 109.46565 * 300.00117 * 3 2 1 37 37 H 1.09002 * 110.34740 * 135.64426 * 13 12 11 38 38 H 1.08998 * 110.34431 * 257.79254 * 13 12 11 39 39 H 1.09000 * 110.92982 * 92.68531 * 14 13 12 40 40 H 1.08997 * 110.93194 * 216.31239 * 14 13 12 41 41 H 1.09003 * 110.32678 * 44.26980 * 15 11 9 42 42 H 1.09001 * 110.41014 * 282.10278 * 15 11 9 43 43 H 1.09005 * 109.44403 * 359.96589 * 16 4 3 44 44 H 1.09001 * 109.49864 * 58.66427 * 17 16 4 45 45 H 1.08994 * 109.49931 * 298.55901 * 17 16 4 46 46 H 1.09002 * 109.57989 * 174.42073 * 18 17 16 47 47 H 1.08997 * 109.58552 * 294.70165 * 18 17 16 48 48 H 0.96993 * 120.00380 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.47037 * 293.57067 * 28 19 18 50 50 H 1.09005 * 109.70701 * 173.28386 * 28 19 18 51 51 H 1.09004 * 109.50121 * 301.34043 * 29 16 4 52 52 H 1.09004 * 109.50055 * 61.44123 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.3047 1.1581 6 8 5.3921 1.2196 1.1493 7 6 3.4450 1.2571 2.4389 8 7 2.1359 1.2356 2.5934 9 7 1.8403 1.1909 3.8428 10 1 0.9385 1.1648 4.1989 11 6 2.9675 1.1907 4.5903 12 6 4.0112 1.2320 3.7341 13 6 5.3170 1.2341 4.4911 14 6 4.9534 0.7582 5.9155 15 6 3.4657 1.1612 6.0179 16 6 4.2371 1.5922 -1.2608 17 6 5.1166 0.3607 -1.4888 18 6 5.8540 0.5051 -2.8240 19 7 6.5864 1.7787 -2.8276 20 6 7.9274 1.8116 -3.1029 21 1 8.5672 1.0083 -2.7685 22 6 8.4646 2.8775 -3.8116 23 7 7.6962 3.8851 -4.1676 24 14 10.2779 2.8818 -4.2602 25 1 10.4622 2.2318 -5.5827 26 1 10.7687 4.2819 -4.3241 27 1 11.0443 2.1350 -3.2306 28 6 5.8528 3.0160 -2.5263 29 6 5.1155 2.8435 -1.1945 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 6.0236 0.5439 4.0299 38 1 5.7359 2.2399 4.5213 39 1 5.0714 -0.3215 6.0073 40 1 5.5509 1.2784 6.6642 41 1 2.9120 0.4221 6.5970 42 1 3.3711 2.1467 6.4740 43 1 3.5280 1.6893 -2.0830 44 1 4.4927 -0.5327 -1.5126 45 1 5.8422 0.2770 -0.6798 46 1 6.5556 -0.3202 -2.9449 47 1 5.1337 0.4954 -3.6420 48 1 8.0715 4.6297 -4.6631 49 1 5.1323 3.2137 -3.3200 50 1 6.5519 3.8490 -2.4516 51 1 4.4908 3.7173 -1.0088 52 1 5.8411 2.7364 -0.3882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731385443.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:23 Heat of formation + Delta-G solvation = 75.542054 kcal Electronic energy + Delta-G solvation = -32108.201001 eV Core-core repulsion = 28110.348633 eV Total energy + Delta-G solvation = -3997.852369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.00759 -39.73453 -37.04498 -36.80520 -35.76369 -33.30208 -32.20536 -31.61492 -29.88356 -29.34272 -28.91479 -27.76023 -26.07743 -25.31210 -23.58790 -22.08718 -22.01577 -21.54060 -21.51139 -20.14629 -19.32675 -18.32761 -17.78803 -16.82316 -16.42017 -16.23415 -15.51051 -15.08402 -14.77268 -14.53388 -14.28537 -13.94584 -13.66812 -13.49312 -13.41597 -13.09706 -13.07790 -12.92386 -12.84695 -12.50822 -12.33795 -12.08757 -11.95853 -11.73716 -11.40140 -11.37436 -11.31381 -11.26692 -10.99167 -10.83864 -10.79306 -10.64896 -10.46620 -10.18123 -9.99160 -9.90355 -9.62068 -9.45227 -9.31481 -9.17749 -8.73758 -8.36244 -8.08794 -6.39589 -5.66214 -3.17817 1.56494 2.01178 2.48935 3.29056 3.46244 3.51745 3.54313 3.62438 4.03001 4.37655 4.46160 4.59467 4.72170 4.89263 4.96909 5.04750 5.10251 5.25984 5.36194 5.42609 5.46725 5.49820 5.53536 5.59096 5.66742 5.73573 5.75489 5.78045 5.85798 5.91113 5.99070 6.00077 6.01237 6.03905 6.14624 6.25464 6.34317 6.41712 6.51314 6.57228 6.72312 6.75774 6.87387 6.92679 6.98625 7.19189 7.30223 7.57506 7.72398 7.84621 7.91865 7.95041 8.57840 8.66868 9.38089 9.97427 10.57956 11.40795 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.003138 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.812477 B = 8921.238767 C =10462.602356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.103 3.897 4 N -0.598 5.598 5 C 0.594 3.406 6 O -0.512 6.512 7 C 0.018 3.982 8 N -0.247 5.247 9 N -0.372 5.372 10 H 0.440 0.560 11 C -0.027 4.027 12 C -0.158 4.158 13 C -0.049 4.049 14 C -0.115 4.115 15 C -0.035 4.035 16 C 0.161 3.839 17 C -0.148 4.148 18 C 0.151 3.849 19 N -0.591 5.591 20 C -0.247 4.247 21 H 0.062 0.938 22 C 0.007 3.993 23 N -0.907 5.907 24 Si 0.903 3.097 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.174 3.826 29 C -0.155 4.155 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.084 0.916 46 H 0.054 0.946 47 H 0.014 0.986 48 H 0.253 0.747 49 H 0.013 0.987 50 H 0.098 0.902 51 H 0.043 0.957 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.680 -5.825 20.228 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.330 5.330 5 C 0.379 3.621 6 O -0.385 6.385 7 C -0.142 4.142 8 N -0.083 5.083 9 N -0.083 5.083 10 H 0.284 0.716 11 C -0.153 4.153 12 C -0.168 4.168 13 C -0.088 4.088 14 C -0.153 4.153 15 C -0.074 4.074 16 C 0.060 3.940 17 C -0.188 4.188 18 C 0.024 3.976 19 N -0.314 5.314 20 C -0.377 4.377 21 H 0.080 0.920 22 C -0.191 4.191 23 N -0.552 5.552 24 Si 0.733 3.267 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.048 3.952 29 C -0.195 4.195 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.032 0.968 48 H 0.063 0.937 49 H 0.031 0.969 50 H 0.116 0.884 51 H 0.061 0.939 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.905 -5.702 19.462 26.402 hybrid contribution 0.694 0.044 0.235 0.734 sum -16.211 -5.658 19.697 26.130 Atomic orbital electron populations 1.21631 0.95592 1.01244 1.01592 1.21830 0.95658 0.97467 1.02049 1.21934 0.79476 0.97124 1.03507 1.48179 1.06601 1.71289 1.06925 1.16968 0.86293 0.77363 0.81478 1.90806 1.12639 1.49045 1.86022 1.21620 0.89086 1.09019 0.94496 1.73940 1.15951 1.20404 0.97974 1.42769 1.08415 1.54194 1.02964 0.71649 1.22157 0.86877 1.08346 0.97961 1.20860 0.97100 1.07714 0.91174 1.20413 0.93358 1.02594 0.92398 1.22434 0.93876 1.01863 0.97162 1.20609 0.96134 1.02536 0.88119 1.21163 0.93117 0.97106 0.82662 1.22480 0.99317 0.95160 1.01808 1.20859 0.94098 0.90160 0.92456 1.43967 1.05723 1.00880 1.80849 1.19165 0.83666 1.07158 1.27664 0.92014 1.25303 0.98062 0.98082 0.97698 1.69903 1.34422 1.09016 1.41833 0.86277 0.85105 0.76774 0.78569 1.21407 1.21746 1.20424 1.20871 0.94145 0.91195 0.88974 1.22663 0.98916 0.94374 1.03512 0.92727 0.92853 0.93097 0.92201 0.92003 0.88421 0.90986 0.89988 0.90161 0.90566 0.89826 0.90631 0.89711 0.90580 0.93771 0.89727 0.92779 0.96800 0.93687 0.96927 0.88391 0.93878 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.91 37.15 0.37 -0.94 16 2 C -0.13 -1.55 5.78 -26.73 -0.15 -1.70 16 3 C 0.10 1.36 4.99 -4.04 -0.02 1.34 16 4 N -0.60 -9.98 2.44 -167.21 -0.41 -10.39 16 5 C 0.59 10.74 7.03 -12.39 -0.09 10.66 16 6 O -0.51 -11.01 13.19 5.30 0.07 -10.94 16 7 C 0.02 0.27 6.65 -82.80 -0.55 -0.28 16 8 N -0.25 -2.99 7.61 33.40 0.25 -2.73 16 9 N -0.37 -3.34 6.84 33.62 0.23 -3.11 16 10 H 0.44 2.19 8.96 -190.45 -1.71 0.48 16 11 C -0.03 -0.26 8.12 -81.95 -0.67 -0.92 16 12 C -0.16 -2.09 6.83 -104.44 -0.71 -2.80 16 13 C -0.05 -0.55 6.78 -26.97 -0.18 -0.73 16 14 C -0.12 -0.81 7.13 -25.16 -0.18 -0.99 16 15 C -0.03 -0.22 6.78 -26.85 -0.18 -0.40 16 16 C 0.16 3.06 2.51 -67.89 -0.17 2.89 16 17 C -0.15 -3.00 5.26 -26.61 -0.14 -3.14 16 18 C 0.15 3.45 6.51 -3.71 -0.02 3.42 16 19 N -0.59 -15.85 3.00 -172.28 -0.52 -16.37 16 20 C -0.25 -7.15 9.55 -15.06 -0.14 -7.30 16 21 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 22 C 0.01 0.19 5.30 -17.43 -0.09 0.10 16 23 N -0.91 -27.05 10.70 55.49 0.59 -26.46 16 24 Si 0.90 22.54 29.55 -169.99 -5.02 17.51 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 28 C 0.17 4.45 5.24 -3.69 -0.02 4.43 16 29 C -0.15 -3.38 5.27 -26.61 -0.14 -3.52 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.06 0.81 7.11 -51.93 -0.37 0.44 16 35 H 0.10 1.25 5.32 -51.93 -0.28 0.97 16 36 H 0.07 0.89 7.78 -51.93 -0.40 0.48 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.94 6.06 -51.93 -0.31 1.63 16 46 H 0.05 1.21 7.93 -51.93 -0.41 0.80 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.10 2.81 6.01 -51.93 -0.31 2.50 16 51 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.07 1.83 6.37 -51.93 -0.33 1.50 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -34.31 397.69 -11.90 -46.20 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -9.99 Total: 0.18 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.10 Total: 0.11 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.15 Total: -59.06 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.31 -11.90 -46.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731385443.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.744 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds