Wall clock time and date at job start Wed Apr 1 2020 04:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47385 * 2 1 4 4 N 1.46499 * 109.47420 * 180.02562 * 3 2 1 5 5 C 1.34771 * 119.99888 * 276.77236 * 4 3 2 6 6 O 1.21576 * 120.00086 * 175.34295 * 5 4 3 7 7 C 1.47712 * 120.00163 * 355.34076 * 5 4 3 8 8 N 1.31839 * 126.57171 * 5.50327 * 7 5 4 9 9 N 1.28460 * 110.06181 * 179.82384 * 8 7 5 10 10 H 0.96993 * 124.88817 * 180.22550 * 9 8 7 11 11 C 1.35256 * 110.22896 * 0.46208 * 9 8 7 12 12 C 1.35055 * 107.07869 * 359.71007 * 11 9 8 13 13 C 1.50933 * 110.53101 * 180.02562 * 12 11 9 14 14 C 1.54519 * 104.96883 * 16.76937 * 13 12 11 15 15 C 1.51234 * 142.77169 * 179.71371 * 11 9 8 16 16 C 1.46504 * 120.00224 * 96.76565 * 4 3 2 17 17 C 1.53042 * 109.46004 * 240.00469 * 16 4 3 18 18 C 1.53200 * 109.30592 * 178.61276 * 17 16 4 19 19 N 1.46922 * 108.89495 * 54.56643 * 18 17 16 20 20 C 1.36934 * 120.63389 * 126.45795 * 19 18 17 21 21 H 1.08005 * 119.99794 * 324.28159 * 20 19 18 22 22 C 1.38807 * 120.00205 * 144.28782 * 20 19 18 23 23 N 1.31622 * 120.00206 * 3.01204 * 22 20 19 24 24 Si 1.86796 * 120.00267 * 183.01538 * 22 20 19 25 25 H 1.48504 * 109.47283 * 89.99635 * 24 22 20 26 26 H 1.48506 * 109.47399 * 209.99643 * 24 22 20 27 27 H 1.48501 * 109.47213 * 329.99833 * 24 22 20 28 28 C 1.46968 * 118.71074 * 306.63513 * 19 18 17 29 29 C 1.53031 * 109.45753 * 119.93229 * 16 4 3 30 30 H 1.09003 * 109.46797 * 299.99958 * 1 2 3 31 31 H 1.09000 * 109.46934 * 59.99733 * 1 2 3 32 32 H 1.09000 * 109.47118 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47139 * 239.99756 * 2 1 3 34 34 H 1.09000 * 109.47675 * 120.00341 * 2 1 3 35 35 H 1.08994 * 109.47028 * 59.99919 * 3 2 1 36 36 H 1.09001 * 109.46565 * 300.00117 * 3 2 1 37 37 H 1.09002 * 110.34740 * 135.64426 * 13 12 11 38 38 H 1.08998 * 110.34431 * 257.79254 * 13 12 11 39 39 H 1.09000 * 110.92982 * 92.68531 * 14 13 12 40 40 H 1.08997 * 110.93194 * 216.31239 * 14 13 12 41 41 H 1.09003 * 110.32678 * 44.26980 * 15 11 9 42 42 H 1.09001 * 110.41014 * 282.10278 * 15 11 9 43 43 H 1.09005 * 109.44403 * 359.96589 * 16 4 3 44 44 H 1.09001 * 109.49864 * 58.66427 * 17 16 4 45 45 H 1.08994 * 109.49931 * 298.55901 * 17 16 4 46 46 H 1.09002 * 109.57989 * 174.42073 * 18 17 16 47 47 H 1.08997 * 109.58552 * 294.70165 * 18 17 16 48 48 H 0.96993 * 120.00380 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.47037 * 293.57067 * 28 19 18 50 50 H 1.09005 * 109.70701 * 173.28386 * 28 19 18 51 51 H 1.09004 * 109.50121 * 301.34043 * 29 16 4 52 52 H 1.09004 * 109.50055 * 61.44123 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.3047 1.1581 6 8 5.3921 1.2196 1.1493 7 6 3.4450 1.2571 2.4389 8 7 2.1359 1.2356 2.5934 9 7 1.8403 1.1909 3.8428 10 1 0.9385 1.1648 4.1989 11 6 2.9675 1.1907 4.5903 12 6 4.0112 1.2320 3.7341 13 6 5.3170 1.2341 4.4911 14 6 4.9534 0.7582 5.9155 15 6 3.4657 1.1612 6.0179 16 6 4.2371 1.5922 -1.2608 17 6 5.1166 0.3607 -1.4888 18 6 5.8540 0.5051 -2.8240 19 7 6.5864 1.7787 -2.8276 20 6 7.9274 1.8116 -3.1029 21 1 8.5672 1.0083 -2.7685 22 6 8.4646 2.8775 -3.8116 23 7 7.6962 3.8851 -4.1676 24 14 10.2779 2.8818 -4.2602 25 1 10.4622 2.2318 -5.5827 26 1 10.7687 4.2819 -4.3241 27 1 11.0443 2.1350 -3.2306 28 6 5.8528 3.0160 -2.5263 29 6 5.1155 2.8435 -1.1945 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 6.0236 0.5439 4.0299 38 1 5.7359 2.2399 4.5213 39 1 5.0714 -0.3215 6.0073 40 1 5.5509 1.2784 6.6642 41 1 2.9120 0.4221 6.5970 42 1 3.3711 2.1467 6.4740 43 1 3.5280 1.6893 -2.0830 44 1 4.4927 -0.5327 -1.5126 45 1 5.8422 0.2770 -0.6798 46 1 6.5556 -0.3202 -2.9449 47 1 5.1337 0.4954 -3.6420 48 1 8.0715 4.6297 -4.6631 49 1 5.1323 3.2137 -3.3200 50 1 6.5519 3.8490 -2.4516 51 1 4.4908 3.7173 -1.0088 52 1 5.8411 2.7364 -0.3882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731385443.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:22 Heat of formation + Delta-G solvation = 55.133370 kcal Electronic energy + Delta-G solvation = -32109.085988 eV Core-core repulsion = 28110.348633 eV Total energy + Delta-G solvation = -3998.737356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.89742 -41.16817 -38.59648 -37.81326 -37.05167 -34.98024 -33.46384 -32.95888 -31.68555 -31.15596 -29.72580 -28.51897 -27.33694 -26.94320 -25.09074 -23.83860 -23.35858 -22.63246 -22.44662 -21.28297 -20.82079 -19.68527 -18.79193 -18.55360 -17.61534 -17.19781 -17.09714 -16.64458 -16.03066 -15.67199 -15.47678 -15.40676 -15.28531 -15.18963 -14.78271 -14.37688 -14.31698 -14.13164 -13.93811 -13.80531 -13.63861 -13.32538 -13.03336 -12.90142 -12.81099 -12.76180 -12.65485 -12.56896 -12.30523 -12.12889 -12.04240 -12.03134 -11.96261 -11.83115 -11.67932 -11.59168 -11.39634 -11.13445 -10.74861 -10.52922 -10.29781 -9.62558 -9.49095 -8.54715 -7.86749 -5.42713 0.51879 1.09604 1.45168 1.46617 1.56204 1.70145 2.05929 2.35553 2.49850 3.15323 3.28751 3.55488 3.70140 3.71314 3.86011 4.03525 4.07935 4.13746 4.20893 4.24341 4.27178 4.34141 4.47634 4.53886 4.57069 4.65533 4.69305 4.79424 4.83409 4.84750 4.87259 4.89733 4.97390 5.00281 5.02466 5.08948 5.10653 5.15827 5.17268 5.23342 5.29135 5.36195 5.38193 5.43993 5.50546 5.56403 5.63663 5.71586 5.82732 6.17083 6.45998 6.48478 6.85408 7.17763 7.23704 7.84866 8.39923 9.17979 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013033 B = 0.003138 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.812477 B = 8921.238767 C =10462.602356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.101 3.899 4 N -0.596 5.596 5 C 0.587 3.413 6 O -0.561 6.561 7 C -0.018 4.018 8 N -0.241 5.241 9 N -0.349 5.349 10 H 0.461 0.539 11 C -0.001 4.001 12 C -0.203 4.203 13 C -0.056 4.056 14 C -0.106 4.106 15 C -0.029 4.029 16 C 0.169 3.831 17 C -0.133 4.133 18 C 0.150 3.850 19 N -0.611 5.611 20 C -0.268 4.268 21 H 0.056 0.944 22 C -0.043 4.043 23 N -0.932 5.932 24 Si 0.971 3.029 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.274 1.274 28 C 0.184 3.816 29 C -0.138 4.138 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.026 0.974 48 H 0.252 0.748 49 H 0.005 0.995 50 H 0.061 0.939 51 H 0.057 0.943 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.326 -6.538 22.421 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.021 4.021 4 N -0.327 5.327 5 C 0.374 3.626 6 O -0.438 6.438 7 C -0.177 4.177 8 N -0.078 5.078 9 N -0.064 5.064 10 H 0.309 0.691 11 C -0.129 4.129 12 C -0.213 4.213 13 C -0.095 4.095 14 C -0.143 4.143 15 C -0.067 4.067 16 C 0.067 3.933 17 C -0.173 4.173 18 C 0.024 3.976 19 N -0.335 5.335 20 C -0.398 4.398 21 H 0.073 0.927 22 C -0.239 4.239 23 N -0.577 5.577 24 Si 0.798 3.202 25 H -0.206 1.206 26 H -0.215 1.215 27 H -0.199 1.199 28 C 0.058 3.942 29 C -0.178 4.178 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.044 0.956 48 H 0.061 0.939 49 H 0.023 0.977 50 H 0.079 0.921 51 H 0.076 0.924 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.623 -6.436 21.668 29.933 hybrid contribution 1.460 0.258 -0.376 1.529 sum -18.164 -6.178 21.292 28.661 Atomic orbital electron populations 1.21584 0.93155 1.02119 1.02510 1.21741 0.97622 0.95980 1.00894 1.22183 0.76985 0.98456 1.04490 1.48151 1.08029 1.70817 1.05677 1.17461 0.86010 0.76319 0.82769 1.90775 1.14834 1.51267 1.86902 1.21268 0.90352 1.12308 0.93733 1.73805 1.14373 1.20103 0.99498 1.42858 1.09549 1.51895 1.02088 0.69065 1.22663 0.85728 1.05363 0.99108 1.21237 0.99138 1.09609 0.91300 1.20499 0.92442 1.01521 0.95002 1.22452 0.95003 1.02399 0.94495 1.20797 0.95209 1.04763 0.85970 1.20891 0.93064 0.94819 0.84556 1.22258 0.98939 0.96938 0.99118 1.20965 0.94168 0.88365 0.94089 1.44208 1.05572 1.02362 1.81359 1.19415 0.85016 1.07318 1.28098 0.92654 1.26051 1.02516 0.97624 0.97683 1.70080 1.36131 1.09319 1.42192 0.85224 0.79866 0.76704 0.78359 1.20575 1.21524 1.19894 1.20595 0.93193 0.89951 0.90436 1.22382 0.98618 0.96743 1.00105 0.91677 0.92071 0.92265 0.93172 0.93362 0.87675 0.89710 0.92890 0.91161 0.90055 0.87570 0.87427 0.87517 0.88735 0.91264 0.92748 0.93055 0.95566 0.93900 0.97694 0.92053 0.92435 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.12 -2.71 5.78 30.59 0.18 -2.53 16 3 C 0.10 2.51 4.99 86.38 0.43 2.94 16 4 N -0.60 -20.03 2.44 -801.21 -1.95 -21.98 16 5 C 0.59 22.12 7.03 86.75 0.61 22.73 16 6 O -0.56 -25.97 13.19 -3.96 -0.05 -26.02 16 7 C -0.02 -0.56 6.65 42.42 0.28 -0.28 16 8 N -0.24 -5.43 7.61 -48.23 -0.37 -5.80 16 9 N -0.35 -5.23 6.84 -47.56 -0.33 -5.56 16 10 H 0.46 2.71 8.96 -220.01 -1.97 0.74 16 11 C 0.00 -0.01 8.12 41.47 0.34 0.32 16 12 C -0.20 -5.33 6.83 -19.75 -0.13 -5.47 16 13 C -0.06 -1.30 6.78 30.44 0.21 -1.09 16 14 C -0.11 -1.26 7.13 31.61 0.23 -1.03 16 15 C -0.03 -0.25 6.78 30.52 0.21 -0.04 16 16 C 0.17 6.52 2.51 45.02 0.11 6.64 16 17 C -0.13 -5.50 5.26 30.68 0.16 -5.34 16 18 C 0.15 6.99 6.51 86.37 0.56 7.55 16 19 N -0.61 -34.04 3.00 -698.98 -2.10 -36.14 16 20 C -0.27 -16.14 9.55 84.03 0.80 -15.33 16 21 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 22 C -0.04 -2.56 5.30 84.86 0.45 -2.11 16 23 N -0.93 -57.29 10.70 21.65 0.23 -57.06 16 24 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 28 C 0.18 9.85 5.24 86.36 0.45 10.30 16 29 C -0.14 -6.30 5.27 30.67 0.16 -6.14 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.05 1.20 7.11 -2.39 -0.02 1.18 16 35 H 0.11 2.50 5.32 -2.39 -0.01 2.48 16 36 H 0.08 1.90 7.78 -2.39 -0.02 1.88 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.09 3.32 7.71 -2.38 -0.02 3.30 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.05 2.63 6.06 -2.39 -0.01 2.61 16 46 H 0.05 2.36 7.93 -2.39 -0.02 2.35 16 47 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 49 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.06 3.71 6.01 -2.38 -0.01 3.70 16 51 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 52 H 0.04 2.31 6.37 -2.39 -0.02 2.29 16 Total: -1.00 -80.10 397.69 2.17 -77.92 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -1.05 Total: 15.41 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.76 Total: 9.74 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -4.51 Total: -126.53 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -80.10 2.17 -77.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731385443.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.056 kcal (2) G-P(sol) polarization free energy of solvation -80.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds