Wall clock time and date at job start Wed Apr 1 2020 05:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46765 * 2 1 4 4 N 1.46497 * 109.47085 * 175.33862 * 3 2 1 5 5 C 1.34771 * 120.00320 * 95.93618 * 4 3 2 6 6 O 1.21604 * 120.00163 * 185.15430 * 5 4 3 7 7 C 1.47429 * 119.99568 * 5.16509 * 5 4 3 8 8 C 1.41291 * 126.41724 * 145.64442 * 7 5 4 9 9 N 1.30436 * 108.02548 * 180.02562 * 8 7 5 10 10 N 1.39932 * 108.89989 * 359.97438 * 9 8 7 11 11 C 1.46501 * 125.75814 * 179.97438 * 10 9 8 12 12 C 1.53777 * 113.61524 * 95.02533 * 11 10 9 13 13 C 1.53784 * 87.17292 * 139.94186 * 12 11 10 14 14 C 1.53777 * 113.61744 * 192.52654 * 11 10 9 15 15 C 1.34260 * 108.49090 * 0.23144 * 10 9 8 16 16 C 1.46509 * 119.99777 * 275.94124 * 4 3 2 17 17 H 1.09002 * 110.64325 * 359.29650 * 16 4 3 18 18 C 1.55155 * 110.72124 * 122.44462 * 16 4 3 19 19 C 1.55113 * 101.48577 * 153.73458 * 18 16 4 20 20 N 1.47422 * 104.94300 * 323.21606 * 19 18 16 21 21 C 1.36940 * 125.65113 * 203.97063 * 20 19 18 22 22 H 1.07997 * 120.00042 * 180.02562 * 21 20 19 23 23 C 1.38816 * 119.99936 * 0.04346 * 21 20 19 24 24 N 1.31622 * 119.99981 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00204 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47237 * 59.99691 * 25 23 21 27 27 H 1.48497 * 109.47290 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46954 * 300.00432 * 25 23 21 29 29 C 1.47017 * 108.70397 * 24.00903 * 20 19 18 30 30 H 1.08996 * 109.47182 * 299.99251 * 1 2 3 31 31 H 1.08997 * 109.47223 * 59.99942 * 1 2 3 32 32 H 1.09002 * 109.46742 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47606 * 240.00420 * 2 1 3 34 34 H 1.08997 * 109.47223 * 120.00057 * 2 1 3 35 35 H 1.09000 * 109.46939 * 55.33766 * 3 2 1 36 36 H 1.08994 * 109.47153 * 295.33954 * 3 2 1 37 37 H 1.08006 * 125.98449 * 0.02562 * 8 7 5 38 38 H 1.09005 * 112.84792 * 323.83007 * 11 10 9 39 39 H 1.09004 * 113.61602 * 254.52991 * 12 11 10 40 40 H 1.09004 * 113.61554 * 25.35066 * 12 11 10 41 41 H 1.08998 * 113.61679 * 89.16169 * 13 12 11 42 42 H 1.09001 * 113.60984 * 220.06416 * 13 12 11 43 43 H 1.09011 * 113.61284 * 334.56660 * 14 11 10 44 44 H 1.08994 * 113.62005 * 105.38196 * 14 11 10 45 45 H 1.08001 * 126.29453 * 179.74687 * 15 10 9 46 46 H 1.09003 * 111.00177 * 271.93963 * 18 16 4 47 47 H 1.09000 * 111.00410 * 35.78398 * 18 16 4 48 48 H 1.09004 * 110.41717 * 204.29265 * 19 18 16 49 49 H 1.08997 * 110.30923 * 82.08912 * 19 18 16 50 50 H 0.96993 * 120.00155 * 180.02562 * 24 23 21 51 51 H 1.08999 * 109.88418 * 239.52269 * 29 20 19 52 52 H 1.08999 * 109.88741 * 118.35800 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5006 1.4442 0.1122 5 6 4.2616 1.5342 -0.9964 6 8 5.4712 1.4413 -0.9128 7 6 3.6275 1.7454 -2.3105 8 6 4.1550 2.4953 -3.3855 9 7 3.3009 2.4451 -4.3701 10 7 2.2025 1.6717 -3.9783 11 6 1.0270 1.3757 -4.8009 12 6 1.1192 0.0342 -5.5470 13 6 -0.3684 -0.1669 -5.2129 14 6 -0.1412 0.7651 -4.0089 15 6 2.4050 1.2514 -2.7194 16 6 4.1341 1.3479 1.4298 17 1 3.3806 1.2951 2.2156 18 6 5.0820 0.1213 1.4948 19 6 6.0952 0.5710 2.5798 20 7 6.2756 2.0169 2.3554 21 6 7.3691 2.7521 2.7281 22 1 7.4053 3.8108 2.5177 23 6 8.4313 2.1366 3.3762 24 7 8.3871 0.8463 3.6328 25 14 9.9226 3.1395 3.8854 26 1 9.5019 4.2107 4.8239 27 1 10.9097 2.2543 4.5541 28 1 10.5421 3.7510 2.6822 29 6 5.0867 2.5389 1.6659 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6100 1.9799 0.8453 36 1 1.7464 1.9317 -0.9287 37 1 5.1000 3.0184 -3.3911 38 1 0.7351 2.2105 -5.4381 39 1 1.3166 0.1405 -6.6137 40 1 1.7767 -0.6893 -5.0648 41 1 -1.0439 0.2450 -5.9627 42 1 -0.6185 -1.1903 -4.9330 43 1 0.1705 0.2410 -3.1053 44 1 -0.9606 1.4619 -3.8325 45 1 1.7353 0.6383 -2.1346 46 1 4.5426 -0.7731 1.8067 47 1 5.5804 -0.0385 0.5387 48 1 7.0428 0.0468 2.4558 49 1 5.6894 0.3893 3.5749 50 1 9.1290 0.4163 4.0859 51 1 5.3750 2.9781 0.7108 52 1 4.5966 3.2880 2.2877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732036320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:19 Heat of formation + Delta-G solvation = 88.472697 kcal Electronic energy + Delta-G solvation = -31925.616534 eV Core-core repulsion = 27928.324881 eV Total energy + Delta-G solvation = -3997.291654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.71604 -41.01178 -39.36580 -38.27853 -37.21566 -34.63956 -33.30713 -32.74647 -31.74024 -30.76640 -28.89342 -27.13550 -26.80688 -26.59962 -26.10186 -23.81561 -22.80557 -22.49363 -21.98541 -21.82368 -20.27639 -20.09433 -18.93063 -18.50435 -17.70109 -17.06183 -16.76967 -16.59226 -16.18324 -16.02895 -15.85791 -15.51071 -15.31949 -15.17950 -14.73245 -14.29016 -14.08603 -13.97382 -13.79706 -13.71338 -13.46296 -13.32686 -13.21220 -12.97998 -12.91342 -12.77920 -12.68222 -12.44992 -12.31553 -12.19918 -12.05927 -12.02335 -11.89614 -11.80875 -11.66158 -11.59564 -11.41274 -11.36780 -10.72440 -10.54017 -10.49273 -9.71893 -9.49079 -8.83764 -7.74625 -5.18176 0.53671 1.15713 1.36766 1.43414 1.48878 1.54681 1.99720 2.32488 2.51775 3.15876 3.33576 3.48694 3.56109 3.65344 3.77038 3.80971 3.81577 3.87302 3.92971 3.99317 4.17547 4.21168 4.30359 4.38068 4.44025 4.53159 4.56378 4.60997 4.66949 4.69630 4.73627 4.76755 4.79715 4.96075 4.96899 5.00453 5.02404 5.04855 5.09352 5.12230 5.22776 5.31145 5.33968 5.41690 5.44322 5.55017 5.67621 5.81281 5.83810 5.90333 6.33411 6.46759 6.59222 7.12987 7.36261 7.80959 8.45202 9.27046 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.002739 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.706636 B =10220.668647 C =11161.173156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.090 3.910 4 N -0.595 5.595 5 C 0.581 3.419 6 O -0.569 6.569 7 C -0.305 4.305 8 C 0.085 3.915 9 N -0.319 5.319 10 N -0.340 5.340 11 C 0.111 3.889 12 C -0.153 4.153 13 C -0.122 4.122 14 C -0.140 4.140 15 C 0.106 3.894 16 C 0.156 3.844 17 H 0.121 0.879 18 C -0.139 4.139 19 C 0.162 3.838 20 N -0.618 5.618 21 C -0.237 4.237 22 H 0.073 0.927 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.982 3.018 26 H -0.274 1.274 27 H -0.289 1.289 28 H -0.283 1.283 29 C 0.130 3.870 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.185 0.815 38 H 0.133 0.867 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.220 0.780 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.064 0.936 49 H -0.003 1.003 50 H 0.247 0.753 51 H 0.013 0.987 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.706 -3.677 -16.855 33.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.031 4.031 4 N -0.326 5.326 5 C 0.371 3.629 6 O -0.448 6.448 7 C -0.320 4.320 8 C -0.102 4.102 9 N -0.139 5.139 10 N -0.119 5.119 11 C 0.011 3.989 12 C -0.192 4.192 13 C -0.160 4.160 14 C -0.179 4.179 15 C -0.046 4.046 16 C 0.052 3.948 17 H 0.139 0.861 18 C -0.179 4.179 19 C 0.036 3.964 20 N -0.344 5.344 21 C -0.366 4.366 22 H 0.091 0.909 23 C -0.262 4.262 24 N -0.599 5.599 25 Si 0.810 3.190 26 H -0.199 1.199 27 H -0.215 1.215 28 H -0.209 1.209 29 C 0.004 3.996 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.201 0.799 38 H 0.151 0.849 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.236 0.764 46 H 0.103 0.897 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.015 0.985 50 H 0.056 0.944 51 H 0.031 0.969 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -28.271 -3.362 -18.026 33.697 hybrid contribution 1.986 0.361 1.247 2.373 sum -26.285 -3.001 -16.778 31.328 Atomic orbital electron populations 1.21755 0.92469 1.03080 1.03254 1.22094 0.98073 0.95734 1.02798 1.22289 0.77420 0.98488 1.04937 1.47799 1.07594 1.72650 1.04600 1.17779 0.85776 0.75647 0.83708 1.90864 1.16180 1.50895 1.86897 1.20295 0.99459 1.15071 0.97196 1.24015 0.99038 0.97608 0.89502 1.77128 0.97018 1.16371 1.23356 1.48974 1.15862 1.36453 1.10581 1.23724 0.81450 0.99227 0.94511 1.23478 0.99236 0.95013 1.01458 1.22723 0.94458 1.01266 0.97534 1.23557 0.96024 0.99408 0.98884 1.23808 0.95997 0.97897 0.86860 1.21890 0.94350 0.94262 0.84271 0.86129 1.23227 0.97460 0.97282 0.99904 1.21625 0.97598 0.84379 0.92765 1.44568 1.16371 1.05855 1.67591 1.19373 0.94829 0.92093 1.30354 0.90907 1.25650 1.01394 0.97367 1.01744 1.70064 1.32239 1.09827 1.47788 0.85099 0.78693 0.77396 0.77820 1.19938 1.21483 1.20933 1.21612 0.88016 0.95496 0.94473 0.91776 0.90893 0.91394 0.91861 0.91568 0.88656 0.88639 0.79856 0.84939 0.90109 0.90552 0.87684 0.88966 0.88373 0.87588 0.76433 0.89710 0.92354 0.91784 0.98491 0.94356 0.96885 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 71.98 0.71 -0.26 16 2 C -0.15 -1.95 5.37 30.60 0.16 -1.79 16 3 C 0.09 1.60 4.87 86.38 0.42 2.02 16 4 N -0.60 -17.77 2.54 -795.06 -2.02 -19.79 16 5 C 0.58 20.96 6.67 86.67 0.58 21.54 16 6 O -0.57 -27.36 13.45 -4.04 -0.05 -27.42 16 7 C -0.31 -8.81 5.53 -20.15 -0.11 -8.93 16 8 C 0.08 2.52 11.98 85.65 1.03 3.55 16 9 N -0.32 -8.50 12.50 -56.28 -0.70 -9.20 16 10 N -0.34 -6.56 3.77 -323.25 -1.22 -7.78 16 11 C 0.11 1.18 5.03 45.51 0.23 1.41 16 12 C -0.15 -1.38 7.87 31.12 0.24 -1.14 16 13 C -0.12 -0.35 8.10 31.18 0.25 -0.10 16 14 C -0.14 -0.55 7.42 31.18 0.23 -0.31 16 15 C 0.11 2.07 8.17 84.28 0.69 2.76 16 16 C 0.16 5.70 3.43 46.18 0.16 5.86 16 17 H 0.12 3.62 7.94 -2.39 -0.02 3.60 16 18 C -0.14 -5.94 6.43 32.06 0.21 -5.73 16 19 C 0.16 8.77 5.89 86.93 0.51 9.29 16 20 N -0.62 -35.57 3.40 -691.59 -2.35 -37.92 16 21 C -0.24 -14.72 10.27 84.03 0.86 -13.86 16 22 H 0.07 4.38 7.83 -2.91 -0.02 4.36 16 23 C -0.07 -4.26 5.49 84.86 0.47 -3.80 16 24 N -0.95 -60.58 10.09 21.65 0.22 -60.36 16 25 Si 0.98 49.21 29.55 68.60 2.03 51.23 16 26 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 29 C 0.13 6.16 6.50 86.73 0.56 6.73 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.20 7.75 -2.39 -0.02 0.19 16 32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.84 6.49 -2.39 -0.02 0.83 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.43 8.07 -2.39 -0.02 1.41 16 36 H 0.10 1.48 4.71 -2.39 -0.01 1.46 16 37 H 0.18 5.45 8.06 -2.91 -0.02 5.43 16 38 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.10 0.30 5.89 -2.38 -0.01 0.29 16 44 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.22 2.75 2.61 -2.91 -0.01 2.74 16 46 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 47 H 0.06 2.83 5.85 -2.39 -0.01 2.82 16 48 H 0.06 4.02 5.87 -2.38 -0.01 4.00 16 49 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 50 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 51 H 0.01 0.68 6.23 -2.39 -0.01 0.67 16 52 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -86.20 398.87 4.03 -82.17 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.92 Total: 11.84 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 7.21 Total: 17.23 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -6.07 Total: -135.06 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.42 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.23 kcal Total: -86.20 4.03 -82.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732036320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.646 kcal (2) G-P(sol) polarization free energy of solvation -86.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds