Wall clock time and date at job start Wed Apr 1 2020 04:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47029 * 2 1 4 4 N 1.46506 * 109.46596 * 179.97438 * 3 2 1 5 5 C 1.34781 * 120.00106 * 90.00187 * 4 3 2 6 6 O 1.21274 * 119.99895 * 179.97438 * 5 4 3 7 7 C 1.50704 * 119.99760 * 359.97438 * 5 4 3 8 8 C 1.52994 * 109.46850 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47100 * 179.97438 * 8 7 5 10 10 C 1.38392 * 119.99885 * 124.99862 * 9 8 7 11 11 N 1.32134 * 119.99520 * 179.97438 * 10 9 8 12 12 C 1.32154 * 120.00018 * 0.02562 * 11 10 9 13 13 C 1.38348 * 120.00009 * 359.97438 * 12 11 10 14 14 N 1.32123 * 120.00156 * 304.72087 * 9 8 7 15 15 C 1.46497 * 119.99810 * 269.99231 * 4 3 2 16 16 C 1.53047 * 109.46077 * 240.02962 * 15 4 3 17 17 C 1.53197 * 109.31136 * 178.60362 * 16 15 4 18 18 N 1.46928 * 108.76324 * 54.65546 * 17 16 15 19 19 C 1.36936 * 120.62773 * 126.40473 * 18 17 16 20 20 H 1.08002 * 119.99932 * 331.82471 * 19 18 17 21 21 C 1.38812 * 119.99898 * 151.81904 * 19 18 17 22 22 N 1.31624 * 120.00062 * 343.08483 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 163.08045 * 21 19 18 24 24 H 1.48500 * 109.47098 * 60.00329 * 23 21 19 25 25 H 1.48501 * 109.46920 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46934 * 300.00116 * 23 21 19 27 27 C 1.46921 * 118.74108 * 306.38503 * 18 17 16 28 28 C 1.53039 * 109.45659 * 119.97997 * 15 4 3 29 29 H 1.08998 * 109.46783 * 300.00389 * 1 2 3 30 30 H 1.08998 * 109.46576 * 60.00234 * 1 2 3 31 31 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47024 * 239.99352 * 2 1 3 33 33 H 1.09007 * 109.46520 * 119.99477 * 2 1 3 34 34 H 1.08998 * 109.47656 * 60.00146 * 3 2 1 35 35 H 1.08998 * 109.47251 * 299.99353 * 3 2 1 36 36 H 1.09004 * 109.46712 * 300.00205 * 7 5 4 37 37 H 1.08998 * 109.47508 * 60.00100 * 7 5 4 38 38 H 1.09002 * 109.47604 * 299.99842 * 8 7 5 39 39 H 1.09006 * 109.47836 * 59.99917 * 8 7 5 40 40 H 1.07996 * 120.00392 * 359.96101 * 10 9 8 41 41 H 1.07995 * 119.99694 * 180.02562 * 12 11 10 42 42 H 1.07994 * 119.99425 * 180.02562 * 13 12 11 43 43 H 1.08995 * 109.46128 * 0.02562 * 15 4 3 44 44 H 1.09001 * 109.49768 * 298.56625 * 16 15 4 45 45 H 1.09000 * 109.49576 * 58.66796 * 16 15 4 46 46 H 1.09004 * 109.59674 * 294.87048 * 17 16 15 47 47 H 1.09000 * 109.70250 * 174.50677 * 17 16 15 48 48 H 0.96994 * 119.99832 * 179.97438 * 22 21 19 49 49 H 1.09008 * 109.58698 * 293.81985 * 27 18 17 50 50 H 1.08998 * 109.70792 * 173.46957 * 27 18 17 51 51 H 1.09007 * 109.49779 * 301.33557 * 28 15 4 52 52 H 1.09000 * 109.49980 * 61.43269 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1795 1.4422 -1.1663 6 8 5.3922 1.4425 -1.1658 7 6 3.4265 1.4415 -2.4718 8 6 4.4212 1.4408 -3.6342 9 6 3.6683 1.4394 -4.9396 10 6 3.9178 2.4205 -5.8833 11 7 3.2580 2.4190 -7.0281 12 6 2.3595 1.4810 -7.2716 13 6 2.1101 0.5003 -6.3282 14 7 2.7739 0.4985 -5.1855 15 6 4.2370 1.4426 1.2697 16 6 5.1163 2.6927 1.3508 17 6 5.8533 2.7073 2.6938 18 7 6.5868 1.4430 2.8441 19 6 7.9282 1.4432 3.1192 20 1 8.5458 2.2678 2.7951 21 6 8.4942 0.3836 3.8147 22 7 7.7269 -0.4430 4.4934 23 14 10.3448 0.1306 3.7875 24 1 11.0166 1.3291 4.3509 25 1 10.6935 -1.0614 4.6016 26 1 10.7954 -0.0774 2.3879 27 6 5.8535 0.1788 2.6941 28 6 5.1162 0.1927 1.3513 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 2.8001 0.5513 -2.5294 37 1 2.7996 2.3312 -2.5301 38 1 5.0480 2.3307 -3.5768 39 1 5.0479 0.5507 -3.5758 40 1 4.6516 3.1874 -5.6840 41 1 1.8205 1.4795 -8.2075 42 1 1.3761 -0.2664 -6.5275 43 1 3.5282 1.4425 2.0977 44 1 5.8419 2.6806 0.5375 45 1 4.4920 3.5825 1.2690 46 1 5.1328 2.8104 3.5052 47 1 6.5543 3.5416 2.7192 48 1 8.1224 -1.1836 4.9791 49 1 5.1330 0.0757 3.5056 50 1 6.5529 -0.6569 2.7183 51 1 4.4919 -0.6972 1.2698 52 1 5.8417 0.2044 0.5380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752442069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:53 Heat of formation + Delta-G solvation = 24.500843 kcal Electronic energy + Delta-G solvation = -31151.779424 eV Core-core repulsion = 27151.713743 eV Total energy + Delta-G solvation = -4000.065682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.42331 -40.13606 -37.14740 -35.98672 -35.16634 -33.83667 -33.27306 -31.99473 -30.81812 -29.93673 -29.33659 -26.39522 -26.11126 -24.95230 -24.48505 -22.81477 -22.18559 -21.65275 -21.59797 -19.47173 -18.62130 -17.85207 -17.33910 -17.05116 -16.50310 -16.07898 -15.71475 -15.54364 -15.07677 -14.74899 -14.60746 -14.12691 -13.91089 -13.73762 -13.52982 -13.41306 -13.07779 -12.88593 -12.62736 -12.60481 -12.46744 -12.27372 -12.23174 -11.90149 -11.76733 -11.60673 -11.42666 -11.35057 -11.27770 -11.03896 -10.91309 -10.77295 -10.63151 -10.26199 -10.06604 -9.99688 -9.63347 -9.57929 -9.46974 -9.37858 -9.11414 -8.44256 -8.20723 -6.57879 -5.70556 -3.11774 0.42327 0.79465 2.87263 3.14646 3.36941 3.45301 3.50061 3.53255 3.70074 3.93824 4.12236 4.37148 4.57984 4.64946 4.70956 4.76674 4.84957 4.93990 5.02791 5.08461 5.12714 5.19675 5.29507 5.39836 5.42716 5.49764 5.53141 5.58321 5.68454 5.72233 5.79692 5.85530 5.88222 5.91990 5.95219 6.06093 6.16594 6.23151 6.40103 6.43734 6.60147 6.67379 6.81293 6.88695 6.93127 7.09426 7.17936 7.44303 7.46468 7.67378 7.78871 7.88333 8.47689 8.54529 9.30298 9.93888 10.50512 11.38276 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.002623 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.269463 B =10673.583752 C =12000.361525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.611 5.611 5 C 0.511 3.489 6 O -0.522 6.522 7 C -0.131 4.131 8 C -0.053 4.053 9 C 0.089 3.911 10 C 0.053 3.947 11 N -0.437 5.437 12 C 0.037 3.963 13 C 0.054 3.946 14 N -0.435 5.435 15 C 0.161 3.839 16 C -0.146 4.146 17 C 0.151 3.849 18 N -0.589 5.589 19 C -0.246 4.246 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.906 5.906 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.176 3.824 28 C -0.152 4.152 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.171 0.829 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.014 0.986 47 H 0.054 0.946 48 H 0.253 0.747 49 H 0.014 0.986 50 H 0.088 0.912 51 H 0.042 0.958 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.052 3.113 -18.953 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C -0.015 4.015 4 N -0.343 5.343 5 C 0.298 3.702 6 O -0.398 6.398 7 C -0.172 4.172 8 C -0.092 4.092 9 C -0.051 4.051 10 C -0.107 4.107 11 N -0.151 5.151 12 C -0.123 4.123 13 C -0.106 4.106 14 N -0.151 5.151 15 C 0.059 3.941 16 C -0.186 4.186 17 C 0.023 3.977 18 N -0.312 5.312 19 C -0.376 4.376 20 H 0.081 0.919 21 C -0.197 4.197 22 N -0.550 5.550 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.050 3.950 28 C -0.192 4.192 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.188 0.812 41 H 0.185 0.815 42 H 0.186 0.814 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.032 0.968 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.032 0.968 50 H 0.106 0.894 51 H 0.061 0.939 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.324 2.988 -18.836 25.765 hybrid contribution 0.584 -0.307 -0.036 0.661 sum -16.739 2.681 -18.871 25.368 Atomic orbital electron populations 1.21697 0.95340 1.01900 1.01690 1.21994 0.95855 0.97370 1.03129 1.21641 0.80202 0.96823 1.02791 1.48333 1.06015 1.73327 1.06651 1.20442 0.88110 0.76567 0.85070 1.90727 1.13591 1.48398 1.87069 1.21630 0.99002 1.04486 0.92034 1.20297 0.96247 1.05540 0.87088 1.22403 0.93922 0.91190 0.97631 1.23709 0.98622 0.98610 0.89767 1.68463 1.04661 1.22667 1.19331 1.23758 0.95864 0.91886 1.00783 1.23801 0.98144 0.98616 0.90027 1.68293 1.04799 1.22363 1.19643 1.21100 0.93047 0.97200 0.82765 1.22442 0.99215 0.95023 1.01924 1.20840 0.94146 0.90287 0.92384 1.44006 1.05856 0.99419 1.81910 1.19137 0.83299 1.06550 1.28628 0.91861 1.25016 0.97741 0.99997 0.96978 1.70019 1.33989 1.18273 1.32764 0.86377 0.85666 0.77237 0.77563 1.20941 1.21712 1.21019 1.20718 0.94076 0.90535 0.89684 1.22617 0.98992 0.94409 1.03210 0.92585 0.92825 0.92522 0.91704 0.91156 0.90451 0.90892 0.88199 0.89586 0.88825 0.88492 0.81227 0.81492 0.81371 0.90804 0.89930 0.93770 0.96806 0.92712 0.93709 0.96764 0.89410 0.93898 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.14 -1.39 6.26 -26.73 -0.17 -1.56 16 3 C 0.11 1.10 5.18 -4.04 -0.02 1.08 16 4 N -0.61 -8.51 2.42 -166.06 -0.40 -8.91 16 5 C 0.51 7.44 7.10 -10.98 -0.08 7.36 16 6 O -0.52 -9.78 12.22 5.56 0.07 -9.71 16 7 C -0.13 -1.38 4.12 -27.88 -0.11 -1.49 16 8 C -0.05 -0.55 4.92 -27.89 -0.14 -0.68 16 9 C 0.09 0.86 6.17 -82.41 -0.51 0.35 16 10 C 0.05 0.48 10.85 -17.36 -0.19 0.29 16 11 N -0.44 -4.15 10.50 -13.06 -0.14 -4.29 16 12 C 0.04 0.26 11.22 -17.37 -0.20 0.07 16 13 C 0.05 0.39 11.22 -17.37 -0.20 0.20 16 14 N -0.44 -4.27 10.06 -9.29 -0.09 -4.36 16 15 C 0.16 2.78 2.51 -67.89 -0.17 2.61 16 16 C -0.15 -2.74 5.27 -26.61 -0.14 -2.88 16 17 C 0.15 3.29 6.52 -3.71 -0.02 3.26 16 18 N -0.59 -15.36 2.99 -172.31 -0.52 -15.88 16 19 C -0.25 -7.04 9.58 -15.06 -0.14 -7.18 16 20 H 0.06 1.79 7.89 -52.49 -0.41 1.37 16 21 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 22 N -0.91 -26.91 11.19 55.49 0.62 -26.29 16 23 Si 0.90 22.48 29.59 -169.99 -5.03 17.45 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.18 4.36 5.30 -3.71 -0.02 4.34 16 28 C -0.15 -3.13 5.27 -26.61 -0.14 -3.27 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.65 7.22 -51.93 -0.37 0.28 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.74 7.92 -51.93 -0.41 0.32 16 35 H 0.07 0.60 6.44 -51.93 -0.33 0.26 16 36 H 0.10 1.02 7.01 -51.93 -0.36 0.65 16 37 H 0.09 0.77 7.40 -51.93 -0.38 0.38 16 38 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 39 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.17 1.17 7.95 -52.49 -0.42 0.76 16 41 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 44 H 0.08 1.76 6.21 -51.93 -0.32 1.44 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 49 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 50 H 0.09 2.45 6.07 -51.93 -0.31 2.13 16 51 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 52 H 0.08 1.83 6.21 -51.93 -0.32 1.51 16 LS Contribution 408.16 15.07 6.15 6.15 Total: -1.00 -34.12 408.16 -9.97 -44.08 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.67 Total: 0.07 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.96 Total: 1.68 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.53 Total: -59.72 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.12 -9.97 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752442069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.585 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds