Wall clock time and date at job start Wed Apr 1 2020 04:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47029 * 2 1 4 4 N 1.46506 * 109.46596 * 179.97438 * 3 2 1 5 5 C 1.34781 * 120.00106 * 90.00187 * 4 3 2 6 6 O 1.21274 * 119.99895 * 179.97438 * 5 4 3 7 7 C 1.50704 * 119.99760 * 359.97438 * 5 4 3 8 8 C 1.52994 * 109.46850 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47100 * 179.97438 * 8 7 5 10 10 C 1.38392 * 119.99885 * 124.99862 * 9 8 7 11 11 N 1.32134 * 119.99520 * 179.97438 * 10 9 8 12 12 C 1.32154 * 120.00018 * 0.02562 * 11 10 9 13 13 C 1.38348 * 120.00009 * 359.97438 * 12 11 10 14 14 N 1.32123 * 120.00156 * 304.72087 * 9 8 7 15 15 C 1.46497 * 119.99810 * 269.99231 * 4 3 2 16 16 C 1.53047 * 109.46077 * 240.02962 * 15 4 3 17 17 C 1.53197 * 109.31136 * 178.60362 * 16 15 4 18 18 N 1.46928 * 108.76324 * 54.65546 * 17 16 15 19 19 C 1.36936 * 120.62773 * 126.40473 * 18 17 16 20 20 H 1.08002 * 119.99932 * 331.82471 * 19 18 17 21 21 C 1.38812 * 119.99898 * 151.81904 * 19 18 17 22 22 N 1.31624 * 120.00062 * 343.08483 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 163.08045 * 21 19 18 24 24 H 1.48500 * 109.47098 * 60.00329 * 23 21 19 25 25 H 1.48501 * 109.46920 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46934 * 300.00116 * 23 21 19 27 27 C 1.46921 * 118.74108 * 306.38503 * 18 17 16 28 28 C 1.53039 * 109.45659 * 119.97997 * 15 4 3 29 29 H 1.08998 * 109.46783 * 300.00389 * 1 2 3 30 30 H 1.08998 * 109.46576 * 60.00234 * 1 2 3 31 31 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47024 * 239.99352 * 2 1 3 33 33 H 1.09007 * 109.46520 * 119.99477 * 2 1 3 34 34 H 1.08998 * 109.47656 * 60.00146 * 3 2 1 35 35 H 1.08998 * 109.47251 * 299.99353 * 3 2 1 36 36 H 1.09004 * 109.46712 * 300.00205 * 7 5 4 37 37 H 1.08998 * 109.47508 * 60.00100 * 7 5 4 38 38 H 1.09002 * 109.47604 * 299.99842 * 8 7 5 39 39 H 1.09006 * 109.47836 * 59.99917 * 8 7 5 40 40 H 1.07996 * 120.00392 * 359.96101 * 10 9 8 41 41 H 1.07995 * 119.99694 * 180.02562 * 12 11 10 42 42 H 1.07994 * 119.99425 * 180.02562 * 13 12 11 43 43 H 1.08995 * 109.46128 * 0.02562 * 15 4 3 44 44 H 1.09001 * 109.49768 * 298.56625 * 16 15 4 45 45 H 1.09000 * 109.49576 * 58.66796 * 16 15 4 46 46 H 1.09004 * 109.59674 * 294.87048 * 17 16 15 47 47 H 1.09000 * 109.70250 * 174.50677 * 17 16 15 48 48 H 0.96994 * 119.99832 * 179.97438 * 22 21 19 49 49 H 1.09008 * 109.58698 * 293.81985 * 27 18 17 50 50 H 1.08998 * 109.70792 * 173.46957 * 27 18 17 51 51 H 1.09007 * 109.49779 * 301.33557 * 28 15 4 52 52 H 1.09000 * 109.49980 * 61.43269 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1795 1.4422 -1.1663 6 8 5.3922 1.4425 -1.1658 7 6 3.4265 1.4415 -2.4718 8 6 4.4212 1.4408 -3.6342 9 6 3.6683 1.4394 -4.9396 10 6 3.9178 2.4205 -5.8833 11 7 3.2580 2.4190 -7.0281 12 6 2.3595 1.4810 -7.2716 13 6 2.1101 0.5003 -6.3282 14 7 2.7739 0.4985 -5.1855 15 6 4.2370 1.4426 1.2697 16 6 5.1163 2.6927 1.3508 17 6 5.8533 2.7073 2.6938 18 7 6.5868 1.4430 2.8441 19 6 7.9282 1.4432 3.1192 20 1 8.5458 2.2678 2.7951 21 6 8.4942 0.3836 3.8147 22 7 7.7269 -0.4430 4.4934 23 14 10.3448 0.1306 3.7875 24 1 11.0166 1.3291 4.3509 25 1 10.6935 -1.0614 4.6016 26 1 10.7954 -0.0774 2.3879 27 6 5.8535 0.1788 2.6941 28 6 5.1162 0.1927 1.3513 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 2.8001 0.5513 -2.5294 37 1 2.7996 2.3312 -2.5301 38 1 5.0480 2.3307 -3.5768 39 1 5.0479 0.5507 -3.5758 40 1 4.6516 3.1874 -5.6840 41 1 1.8205 1.4795 -8.2075 42 1 1.3761 -0.2664 -6.5275 43 1 3.5282 1.4425 2.0977 44 1 5.8419 2.6806 0.5375 45 1 4.4920 3.5825 1.2690 46 1 5.1328 2.8104 3.5052 47 1 6.5543 3.5416 2.7192 48 1 8.1224 -1.1836 4.9791 49 1 5.1330 0.0757 3.5056 50 1 6.5529 -0.6569 2.7183 51 1 4.4919 -0.6972 1.2698 52 1 5.8417 0.2044 0.5380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752442069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:52 Heat of formation + Delta-G solvation = 3.762714 kcal Electronic energy + Delta-G solvation = -31152.678697 eV Core-core repulsion = 27151.713743 eV Total energy + Delta-G solvation = -4000.964954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06033 -41.33724 -38.76643 -37.15336 -35.95342 -34.97438 -34.35036 -33.40610 -32.03706 -31.52334 -30.84035 -27.49224 -27.17270 -26.10431 -25.41121 -24.07102 -23.86572 -22.83588 -22.48456 -21.09838 -19.80498 -18.86511 -18.50268 -17.91323 -17.62943 -17.29607 -16.83292 -16.48601 -16.43986 -15.84605 -15.63510 -15.43538 -15.30999 -14.99739 -14.86834 -14.75796 -14.24970 -14.16970 -14.02486 -13.87335 -13.41559 -13.23434 -13.13767 -13.02688 -12.97292 -12.66491 -12.59386 -12.58331 -12.55490 -12.37372 -12.19690 -12.15678 -12.04147 -11.96481 -11.78125 -11.57159 -11.36494 -11.20435 -10.61056 -10.43621 -10.13683 -9.99427 -9.50788 -8.68217 -7.88575 -5.32820 -0.16653 0.17316 1.43104 1.47117 1.53479 1.74284 2.05776 2.50078 2.74888 3.07752 3.26268 3.38601 3.48597 3.59255 3.68802 3.90698 3.95786 4.03451 4.05612 4.09090 4.15839 4.25576 4.36305 4.41574 4.44246 4.49867 4.54259 4.60254 4.62038 4.63768 4.69833 4.75680 4.84070 4.88669 4.96476 4.97596 5.00141 5.07605 5.10896 5.17841 5.26074 5.29308 5.44912 5.46979 5.49147 5.51593 5.63067 5.68749 5.82632 6.33709 6.38705 6.58171 6.84378 7.14193 7.34109 7.85741 8.36924 9.17862 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.002623 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.269463 B =10673.583752 C =12000.361525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.105 3.895 4 N -0.608 5.608 5 C 0.505 3.495 6 O -0.570 6.570 7 C -0.115 4.115 8 C -0.047 4.047 9 C 0.078 3.922 10 C 0.045 3.955 11 N -0.461 5.461 12 C 0.042 3.958 13 C 0.055 3.945 14 N -0.457 5.457 15 C 0.170 3.830 16 C -0.131 4.131 17 C 0.146 3.854 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.060 0.940 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.272 1.272 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.185 3.815 28 C -0.135 4.135 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.182 0.818 41 H 0.201 0.799 42 H 0.202 0.798 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.024 0.976 47 H 0.051 0.949 48 H 0.250 0.750 49 H 0.003 0.997 50 H 0.048 0.952 51 H 0.055 0.945 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.702 3.982 -20.846 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C -0.016 4.016 4 N -0.339 5.339 5 C 0.295 3.705 6 O -0.449 6.449 7 C -0.155 4.155 8 C -0.086 4.086 9 C -0.062 4.062 10 C -0.114 4.114 11 N -0.176 5.176 12 C -0.118 4.118 13 C -0.105 4.105 14 N -0.173 5.173 15 C 0.066 3.934 16 C -0.171 4.171 17 C 0.021 3.979 18 N -0.333 5.333 19 C -0.393 4.393 20 H 0.078 0.922 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.793 3.207 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.058 3.942 28 C -0.175 4.175 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.199 0.801 41 H 0.218 0.782 42 H 0.219 0.781 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.021 0.979 50 H 0.067 0.933 51 H 0.073 0.927 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.012 3.888 -20.734 29.077 hybrid contribution 1.328 -0.595 0.476 1.531 sum -18.684 3.293 -20.257 27.754 Atomic orbital electron populations 1.21654 0.93393 1.02314 1.02701 1.21940 0.97456 0.96755 1.01872 1.21943 0.77332 0.97546 1.04822 1.48294 1.07666 1.72804 1.05135 1.21180 0.87756 0.75253 0.86351 1.90720 1.15933 1.50473 1.87790 1.21551 0.98642 1.05928 0.89381 1.20155 0.96140 1.04453 0.87877 1.22179 0.94631 0.91950 0.97393 1.23871 0.98954 0.98868 0.89687 1.68509 1.05659 1.23896 1.19508 1.24355 0.94831 0.90800 1.01827 1.24365 0.97958 0.99164 0.89038 1.68264 1.05337 1.22569 1.21136 1.20771 0.92917 0.94539 0.85141 1.22222 0.98960 0.97156 0.98752 1.20996 0.94209 0.88342 0.94399 1.44256 1.05670 1.01107 1.82240 1.19423 0.84849 1.06661 1.28326 0.92237 1.25761 1.01915 0.99899 0.96975 1.70161 1.35553 1.18640 1.33572 0.85381 0.80734 0.77328 0.77281 1.19778 1.21558 1.21081 1.20483 0.93061 0.89088 0.91534 1.22320 0.98732 0.97080 0.99372 0.92032 0.91326 0.92487 0.92268 0.93215 0.89162 0.88103 0.87391 0.87040 0.88872 0.90827 0.80132 0.78213 0.78130 0.89305 0.92571 0.90552 0.95859 0.93067 0.94067 0.97861 0.93309 0.92651 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.14 -2.40 6.26 30.59 0.19 -2.21 16 3 C 0.11 1.79 5.18 86.38 0.45 2.24 16 4 N -0.61 -15.94 2.42 -797.69 -1.93 -17.87 16 5 C 0.51 14.35 7.10 87.66 0.62 14.98 16 6 O -0.57 -21.93 12.22 -3.01 -0.04 -21.96 16 7 C -0.12 -2.23 4.12 29.85 0.12 -2.10 16 8 C -0.05 -0.96 4.92 29.85 0.15 -0.82 16 9 C 0.08 1.42 6.17 42.55 0.26 1.68 16 10 C 0.04 0.76 10.85 84.68 0.92 1.68 16 11 N -0.46 -7.92 10.50 -195.22 -2.05 -9.97 16 12 C 0.04 0.48 11.22 84.67 0.95 1.43 16 13 C 0.06 0.64 11.22 84.67 0.95 1.59 16 14 N -0.46 -8.10 10.06 -183.29 -1.84 -9.94 16 15 C 0.17 5.73 2.51 45.02 0.11 5.84 16 16 C -0.13 -4.83 5.27 30.68 0.16 -4.67 16 17 C 0.15 6.42 6.52 86.36 0.56 6.99 16 18 N -0.61 -32.72 2.99 -699.08 -2.09 -34.81 16 19 C -0.26 -15.43 9.58 84.03 0.81 -14.63 16 20 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 21 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 22 N -0.93 -57.27 11.19 21.65 0.24 -57.03 16 23 Si 0.96 47.37 29.59 68.60 2.03 49.40 16 24 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 27 C 0.18 9.50 5.30 86.36 0.46 9.96 16 28 C -0.14 -5.69 5.27 30.67 0.16 -5.53 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.07 7.22 -2.39 -0.02 1.05 16 33 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.09 1.36 7.92 -2.39 -0.02 1.34 16 35 H 0.10 1.21 6.44 -2.39 -0.02 1.19 16 36 H 0.11 1.96 7.01 -2.39 -0.02 1.95 16 37 H 0.11 1.62 7.40 -2.39 -0.02 1.60 16 38 H 0.09 1.86 7.85 -2.39 -0.02 1.84 16 39 H 0.07 1.82 8.10 -2.38 -0.02 1.80 16 40 H 0.18 2.39 7.95 -2.91 -0.02 2.37 16 41 H 0.20 0.79 8.06 -2.91 -0.02 0.76 16 42 H 0.20 0.84 8.06 -2.91 -0.02 0.82 16 43 H 0.09 2.78 7.79 -2.39 -0.02 2.76 16 44 H 0.06 2.42 6.21 -2.39 -0.01 2.40 16 45 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 48 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 49 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 50 H 0.05 2.87 6.07 -2.39 -0.01 2.85 16 51 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 52 H 0.05 2.44 6.21 -2.39 -0.01 2.42 16 Total: -1.00 -77.66 408.16 3.22 -74.45 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.90 Total: 14.86 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 8.01 Total: 12.89 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -7.68 Total: -129.62 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.04 Total: -21.96 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -77.66 3.22 -74.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752442069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.209 kcal (2) G-P(sol) polarization free energy of solvation -77.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds