Wall clock time and date at job start Wed Apr 1 2020 05:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46707 * 2 1 4 4 N 1.46499 * 109.46869 * 185.46292 * 3 2 1 5 5 C 1.34774 * 120.00250 * 136.86184 * 4 3 2 6 6 O 1.21283 * 120.00287 * 186.96505 * 5 4 3 7 7 C 1.50706 * 119.99552 * 6.96278 * 5 4 3 8 8 H 1.09003 * 109.71214 * 38.43333 * 7 5 4 9 9 C 1.53393 * 109.71414 * 159.08560 * 7 5 4 10 10 C 1.53024 * 109.72085 * 170.20791 * 9 7 5 11 11 C 1.53367 * 109.74852 * 288.27647 * 10 9 7 12 12 C 1.50947 * 108.20875 * 50.64834 * 11 10 9 13 13 N 1.30122 * 128.28746 * 163.16287 * 12 11 10 14 14 N 1.40313 * 108.12195 * 180.30551 * 13 12 11 15 15 H 0.97003 * 126.00182 * 179.97438 * 14 13 12 16 16 C 1.35189 * 107.99579 * 359.95650 * 14 13 12 17 17 C 1.34569 * 107.61824 * 359.96502 * 16 14 13 18 18 C 1.46499 * 119.99981 * 316.86586 * 4 3 2 19 19 H 1.09001 * 110.64524 * 23.16645 * 18 4 3 20 20 C 1.55154 * 110.72034 * 259.82997 * 18 4 3 21 21 C 1.54907 * 101.58301 * 277.13959 * 20 18 4 22 22 N 1.47427 * 104.83177 * 322.98663 * 21 20 18 23 23 C 1.36933 * 125.65026 * 204.08771 * 22 21 20 24 24 H 1.08001 * 120.00081 * 180.02562 * 23 22 21 25 25 C 1.38813 * 120.00250 * 0.05051 * 23 22 21 26 26 N 1.31617 * 119.99868 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00139 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47586 * 59.99587 * 27 25 23 29 29 H 1.48502 * 109.47222 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47025 * 299.99277 * 27 25 23 31 31 C 1.47026 * 108.70191 * 24.13144 * 22 21 20 32 32 H 1.08996 * 109.46849 * 299.99661 * 1 2 3 33 33 H 1.08996 * 109.46936 * 60.00311 * 1 2 3 34 34 H 1.09007 * 109.46762 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.46849 * 240.00339 * 2 1 3 36 36 H 1.08996 * 109.46936 * 119.99689 * 2 1 3 37 37 H 1.08996 * 109.47275 * 65.46387 * 3 2 1 38 38 H 1.08999 * 109.47172 * 305.46203 * 3 2 1 39 39 H 1.08999 * 109.42904 * 290.28160 * 9 7 5 40 40 H 1.08995 * 109.42876 * 50.13271 * 9 7 5 41 41 H 1.08997 * 109.42641 * 168.18692 * 10 9 7 42 42 H 1.09007 * 109.37403 * 48.32938 * 10 9 7 43 43 H 1.09000 * 109.71681 * 290.97182 * 11 10 9 44 44 H 1.09005 * 109.71434 * 170.33062 * 11 10 9 45 45 H 1.08006 * 126.19334 * 179.97438 * 16 14 13 46 46 H 1.09003 * 111.00453 * 35.21250 * 20 18 4 47 47 H 1.08996 * 111.01038 * 159.06479 * 20 18 4 48 48 H 1.09001 * 110.37174 * 204.14966 * 21 20 18 49 49 H 1.09000 * 110.46089 * 81.87369 * 21 20 18 50 50 H 0.97002 * 120.00446 * 180.02562 * 26 25 23 51 51 H 1.08999 * 109.87906 * 239.52144 * 31 22 21 52 52 H 1.08997 * 110.01276 * 118.42891 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4991 1.4447 -0.1315 5 6 4.0998 2.3223 -0.9594 6 8 5.2924 2.2428 -1.1655 7 6 3.2897 3.4022 -1.6291 8 1 2.5399 3.7830 -0.9355 9 6 4.2141 4.5436 -2.0713 10 6 3.4404 5.5199 -2.9601 11 6 3.1680 4.8743 -4.3243 12 6 2.5581 3.5137 -4.0890 13 7 1.9094 2.7642 -4.9319 14 7 1.5241 1.5909 -4.2658 15 1 1.0261 0.8534 -4.6519 16 6 1.9691 1.6686 -2.9917 17 6 2.6114 2.8433 -2.8555 18 6 4.3052 0.4929 0.6369 19 1 3.7094 -0.3751 0.9194 20 6 4.9154 1.1758 1.8893 21 6 6.1708 1.8580 1.2908 22 7 6.6691 0.9097 0.2780 23 6 7.9584 0.8319 -0.1766 24 1 8.2241 0.0992 -0.9243 25 6 8.9241 1.6944 0.3238 26 7 8.6003 2.5874 1.2349 27 14 10.6830 1.5878 -0.2959 28 1 10.7077 1.8325 -1.7604 29 1 11.5125 2.6107 0.3904 30 1 11.2272 0.2359 -0.0106 31 6 5.5521 0.0620 -0.1639 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.7588 1.9274 0.9348 38 1 1.5990 1.9839 -0.8370 39 1 4.5860 5.0702 -1.1924 40 1 5.0552 4.1332 -2.6300 41 1 4.0281 6.4272 -3.0992 42 1 2.4934 5.7711 -2.4823 43 1 4.1032 4.7679 -4.8741 44 1 2.4751 5.4946 -4.8929 45 1 1.8339 0.9228 -2.2223 46 1 4.2299 1.9145 2.3045 47 1 5.1932 0.4370 2.6409 48 1 6.9221 2.0159 2.0647 49 1 5.9033 2.8059 0.8239 50 1 9.2750 3.1904 1.5844 51 1 5.7788 -0.9849 0.0380 52 1 5.3752 0.2038 -1.2301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753316757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:47 Heat of formation + Delta-G solvation = 90.964805 kcal Electronic energy + Delta-G solvation = -33435.644171 eV Core-core repulsion = 29438.460583 eV Total energy + Delta-G solvation = -3997.183588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71424 -39.88305 -37.02556 -35.95055 -35.65030 -32.84319 -32.41354 -31.42801 -30.48454 -28.89581 -28.60214 -27.34050 -26.08938 -24.73675 -24.21565 -22.26021 -21.67090 -21.53515 -20.20032 -19.85366 -18.78143 -18.23601 -17.64683 -16.85103 -16.49705 -15.77959 -15.45567 -15.09428 -14.82730 -14.60200 -14.33480 -14.11529 -13.72493 -13.56987 -13.43792 -13.25561 -12.97395 -12.87235 -12.48033 -12.35438 -12.06001 -11.90474 -11.81282 -11.64704 -11.43691 -11.35867 -11.16685 -10.97385 -10.81689 -10.77963 -10.70147 -10.66291 -10.57269 -10.33906 -9.95694 -9.93841 -9.61326 -9.41080 -9.33198 -8.90124 -8.40110 -8.25568 -7.93267 -6.45493 -5.36665 -2.71974 1.83320 2.64224 2.78550 3.32960 3.43380 3.55648 3.59399 3.61080 4.42156 4.65105 4.68146 4.72311 4.78155 4.84536 4.95038 5.04488 5.08874 5.27194 5.34612 5.39430 5.43033 5.51055 5.53949 5.55916 5.58094 5.62217 5.68685 5.75225 5.79086 5.80723 5.85664 5.94525 5.95507 6.05956 6.09391 6.12725 6.17132 6.29606 6.39412 6.59108 6.60814 6.64781 6.69440 6.81231 6.95213 7.20737 7.34625 7.62276 7.82585 7.90336 7.94547 8.11571 8.64672 8.96010 9.52012 10.14151 10.81563 11.67989 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.004494 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.549525 B = 6229.454444 C = 7785.428898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.099 3.901 4 N -0.613 5.613 5 C 0.497 3.503 6 O -0.449 6.449 7 C -0.026 4.026 8 H 0.088 0.912 9 C -0.104 4.104 10 C -0.113 4.113 11 C -0.040 4.040 12 C 0.093 3.907 13 N -0.292 5.292 14 N -0.485 5.485 15 H 0.438 0.562 16 C 0.055 3.945 17 C -0.218 4.218 18 C 0.132 3.868 19 H 0.081 0.919 20 C -0.161 4.161 21 C 0.163 3.837 22 N -0.575 5.575 23 C -0.194 4.194 24 H 0.069 0.931 25 C -0.016 4.016 26 N -0.926 5.926 27 Si 0.907 3.093 28 H -0.289 1.289 29 H -0.293 1.293 30 H -0.289 1.289 31 C 0.143 3.857 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.180 0.820 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.097 0.903 49 H 0.015 0.985 50 H 0.246 0.754 51 H 0.013 0.987 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.141 0.220 -4.479 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C -0.025 4.025 4 N -0.350 5.350 5 C 0.281 3.719 6 O -0.317 6.317 7 C -0.049 4.049 8 H 0.106 0.894 9 C -0.141 4.141 10 C -0.151 4.151 11 C -0.079 4.079 12 C -0.076 4.076 13 N -0.114 5.114 14 N -0.193 5.193 15 H 0.281 0.719 16 C -0.091 4.091 17 C -0.230 4.230 18 C 0.028 3.972 19 H 0.099 0.901 20 C -0.200 4.200 21 C 0.038 3.962 22 N -0.300 5.300 23 C -0.324 4.324 24 H 0.087 0.913 25 C -0.211 4.211 26 N -0.576 5.576 27 Si 0.739 3.261 28 H -0.217 1.217 29 H -0.219 1.219 30 H -0.216 1.216 31 C 0.017 3.983 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.197 0.803 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.115 0.885 49 H 0.033 0.967 50 H 0.057 0.943 51 H 0.030 0.970 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -20.656 0.172 -5.768 21.447 hybrid contribution 0.664 -0.542 0.332 0.919 sum -19.992 -0.370 -5.437 20.721 Atomic orbital electron populations 1.21731 0.95120 1.01949 1.02028 1.21942 0.95985 0.97191 1.03132 1.21768 0.81316 0.96996 1.02397 1.47837 1.05399 1.36666 1.45065 1.20432 0.88773 0.82631 0.80017 1.91096 1.13346 1.69548 1.57717 1.19789 0.96879 0.94961 0.93228 0.89391 1.21439 0.97945 0.94422 1.00342 1.21567 1.00734 0.98359 0.94403 1.20176 1.00306 0.88904 0.98540 1.22343 0.96851 0.97164 0.91244 1.76971 1.19698 0.94488 1.20229 1.46270 1.47148 1.17570 1.08328 0.71890 1.22502 0.98689 0.99296 0.88567 1.19694 1.09526 0.96888 0.96862 1.22096 0.92090 0.90433 0.92534 0.90086 1.23466 1.00382 0.99994 0.96202 1.21816 0.91336 0.90554 0.92467 1.44093 1.03515 1.37329 1.45062 1.18917 0.83223 1.13470 1.16746 0.91341 1.24625 0.97715 0.98573 1.00138 1.69796 1.31588 1.23553 1.32673 0.86248 0.85115 0.76752 0.77998 1.21654 1.21862 1.21626 1.21345 0.87247 0.93048 0.96707 0.92302 0.92798 0.92391 0.91527 0.90719 0.92109 0.89711 0.90898 0.89902 0.90665 0.91712 0.89592 0.90129 0.80284 0.92648 0.91774 0.88543 0.96700 0.94305 0.96989 0.95210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.14 -1.23 4.70 -26.72 -0.13 -1.36 16 3 C 0.10 1.03 4.48 -4.04 -0.02 1.02 16 4 N -0.61 -9.29 2.79 -164.02 -0.46 -9.75 16 5 C 0.50 8.90 5.52 -10.98 -0.06 8.84 16 6 O -0.45 -10.62 9.76 5.56 0.05 -10.57 16 7 C -0.03 -0.37 2.03 -92.63 -0.19 -0.56 16 8 H 0.09 1.08 7.24 -51.93 -0.38 0.71 16 9 C -0.10 -1.52 4.86 -26.52 -0.13 -1.65 16 10 C -0.11 -1.23 5.86 -26.53 -0.16 -1.39 16 11 C -0.04 -0.46 6.31 -27.57 -0.17 -0.63 16 12 C 0.09 1.27 7.10 -82.35 -0.58 0.68 16 13 N -0.29 -4.02 12.68 33.75 0.43 -3.59 16 14 N -0.49 -5.41 7.37 30.35 0.22 -5.19 16 15 H 0.44 3.34 8.96 -182.43 -1.64 1.71 16 16 C 0.05 0.65 10.10 -17.37 -0.18 0.47 16 17 C -0.22 -2.96 5.14 -104.98 -0.54 -3.50 16 18 C 0.13 2.29 3.42 -66.10 -0.23 2.06 16 19 H 0.08 1.16 5.89 -51.93 -0.31 0.86 16 20 C -0.16 -3.12 6.76 -24.59 -0.17 -3.28 16 21 C 0.16 4.17 5.01 -2.53 -0.01 4.16 16 22 N -0.58 -15.51 2.17 -170.07 -0.37 -15.88 16 23 C -0.19 -5.79 10.27 -15.06 -0.15 -5.95 16 24 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 25 C -0.02 -0.49 5.49 -17.43 -0.10 -0.59 16 26 N -0.93 -28.49 10.09 55.49 0.56 -27.93 16 27 Si 0.91 23.60 29.55 -169.99 -5.02 18.58 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 30 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 31 C 0.14 3.20 5.93 -3.06 -0.02 3.18 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.59 7.16 -51.93 -0.37 0.22 16 36 H 0.07 0.67 6.67 -51.93 -0.35 0.33 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.82 3.85 -51.93 -0.20 0.62 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.18 1.80 4.15 -52.48 -0.22 1.58 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.10 2.80 5.87 -51.93 -0.31 2.49 16 49 H 0.02 0.42 6.37 -51.93 -0.33 0.09 16 50 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 52 H 0.03 0.72 6.45 -51.93 -0.33 0.39 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -36.31 382.52 -10.70 -47.01 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -9.43 Total: 0.65 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.46 Total: 0.91 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.38 Total: -62.35 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.05 Total: -10.57 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.31 -10.70 -47.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753316757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.975 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds