Wall clock time and date at job start Wed Apr 1 2020 05:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46707 * 2 1 4 4 N 1.46499 * 109.46869 * 185.46292 * 3 2 1 5 5 C 1.34774 * 120.00250 * 136.86184 * 4 3 2 6 6 O 1.21283 * 120.00287 * 186.96505 * 5 4 3 7 7 C 1.50706 * 119.99552 * 6.96278 * 5 4 3 8 8 H 1.09003 * 109.71214 * 38.43333 * 7 5 4 9 9 C 1.53393 * 109.71414 * 159.08560 * 7 5 4 10 10 C 1.53024 * 109.72085 * 170.20791 * 9 7 5 11 11 C 1.53367 * 109.74852 * 288.27647 * 10 9 7 12 12 C 1.50947 * 108.20875 * 50.64834 * 11 10 9 13 13 N 1.30122 * 128.28746 * 163.16287 * 12 11 10 14 14 N 1.40313 * 108.12195 * 180.30551 * 13 12 11 15 15 H 0.97003 * 126.00182 * 179.97438 * 14 13 12 16 16 C 1.35189 * 107.99579 * 359.95650 * 14 13 12 17 17 C 1.34569 * 107.61824 * 359.96502 * 16 14 13 18 18 C 1.46499 * 119.99981 * 316.86586 * 4 3 2 19 19 H 1.09001 * 110.64524 * 23.16645 * 18 4 3 20 20 C 1.55154 * 110.72034 * 259.82997 * 18 4 3 21 21 C 1.54907 * 101.58301 * 277.13959 * 20 18 4 22 22 N 1.47427 * 104.83177 * 322.98663 * 21 20 18 23 23 C 1.36933 * 125.65026 * 204.08771 * 22 21 20 24 24 H 1.08001 * 120.00081 * 180.02562 * 23 22 21 25 25 C 1.38813 * 120.00250 * 0.05051 * 23 22 21 26 26 N 1.31617 * 119.99868 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00139 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47586 * 59.99587 * 27 25 23 29 29 H 1.48502 * 109.47222 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47025 * 299.99277 * 27 25 23 31 31 C 1.47026 * 108.70191 * 24.13144 * 22 21 20 32 32 H 1.08996 * 109.46849 * 299.99661 * 1 2 3 33 33 H 1.08996 * 109.46936 * 60.00311 * 1 2 3 34 34 H 1.09007 * 109.46762 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.46849 * 240.00339 * 2 1 3 36 36 H 1.08996 * 109.46936 * 119.99689 * 2 1 3 37 37 H 1.08996 * 109.47275 * 65.46387 * 3 2 1 38 38 H 1.08999 * 109.47172 * 305.46203 * 3 2 1 39 39 H 1.08999 * 109.42904 * 290.28160 * 9 7 5 40 40 H 1.08995 * 109.42876 * 50.13271 * 9 7 5 41 41 H 1.08997 * 109.42641 * 168.18692 * 10 9 7 42 42 H 1.09007 * 109.37403 * 48.32938 * 10 9 7 43 43 H 1.09000 * 109.71681 * 290.97182 * 11 10 9 44 44 H 1.09005 * 109.71434 * 170.33062 * 11 10 9 45 45 H 1.08006 * 126.19334 * 179.97438 * 16 14 13 46 46 H 1.09003 * 111.00453 * 35.21250 * 20 18 4 47 47 H 1.08996 * 111.01038 * 159.06479 * 20 18 4 48 48 H 1.09001 * 110.37174 * 204.14966 * 21 20 18 49 49 H 1.09000 * 110.46089 * 81.87369 * 21 20 18 50 50 H 0.97002 * 120.00446 * 180.02562 * 26 25 23 51 51 H 1.08999 * 109.87906 * 239.52144 * 31 22 21 52 52 H 1.08997 * 110.01276 * 118.42891 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4991 1.4447 -0.1315 5 6 4.0998 2.3223 -0.9594 6 8 5.2924 2.2428 -1.1655 7 6 3.2897 3.4022 -1.6291 8 1 2.5399 3.7830 -0.9355 9 6 4.2141 4.5436 -2.0713 10 6 3.4404 5.5199 -2.9601 11 6 3.1680 4.8743 -4.3243 12 6 2.5581 3.5137 -4.0890 13 7 1.9094 2.7642 -4.9319 14 7 1.5241 1.5909 -4.2658 15 1 1.0261 0.8534 -4.6519 16 6 1.9691 1.6686 -2.9917 17 6 2.6114 2.8433 -2.8555 18 6 4.3052 0.4929 0.6369 19 1 3.7094 -0.3751 0.9194 20 6 4.9154 1.1758 1.8893 21 6 6.1708 1.8580 1.2908 22 7 6.6691 0.9097 0.2780 23 6 7.9584 0.8319 -0.1766 24 1 8.2241 0.0992 -0.9243 25 6 8.9241 1.6944 0.3238 26 7 8.6003 2.5874 1.2349 27 14 10.6830 1.5878 -0.2959 28 1 10.7077 1.8325 -1.7604 29 1 11.5125 2.6107 0.3904 30 1 11.2272 0.2359 -0.0106 31 6 5.5521 0.0620 -0.1639 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.7588 1.9274 0.9348 38 1 1.5990 1.9839 -0.8370 39 1 4.5860 5.0702 -1.1924 40 1 5.0552 4.1332 -2.6300 41 1 4.0281 6.4272 -3.0992 42 1 2.4934 5.7711 -2.4823 43 1 4.1032 4.7679 -4.8741 44 1 2.4751 5.4946 -4.8929 45 1 1.8339 0.9228 -2.2223 46 1 4.2299 1.9145 2.3045 47 1 5.1932 0.4370 2.6409 48 1 6.9221 2.0159 2.0647 49 1 5.9033 2.8059 0.8239 50 1 9.2750 3.1904 1.5844 51 1 5.7788 -0.9849 0.0380 52 1 5.3752 0.2038 -1.2301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753316757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:45 Heat of formation + Delta-G solvation = 67.394897 kcal Electronic energy + Delta-G solvation = -33436.666239 eV Core-core repulsion = 29438.460583 eV Total energy + Delta-G solvation = -3998.205656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.73868 -41.23974 -38.43042 -37.21297 -36.91636 -34.48227 -33.45326 -32.88783 -31.55105 -30.76808 -29.66287 -29.00755 -26.97531 -26.49511 -25.59316 -23.47531 -22.57657 -22.48063 -21.91295 -21.40578 -19.79477 -19.40756 -18.85884 -18.65562 -17.97627 -17.07115 -16.63747 -16.49916 -16.16729 -15.81533 -15.58769 -15.54448 -15.22578 -14.90376 -14.60020 -14.29570 -14.07732 -14.04732 -13.74327 -13.46738 -13.44343 -13.24579 -13.13052 -12.91595 -12.81673 -12.75262 -12.65838 -12.31079 -12.14674 -12.05969 -12.02329 -11.94307 -11.78194 -11.69248 -11.64424 -11.52388 -11.39063 -11.24700 -10.64070 -10.37317 -10.20071 -9.42301 -9.28562 -8.63116 -7.63542 -5.00205 0.87139 1.42140 1.47014 1.52423 1.60015 1.89867 2.01936 2.23641 2.56558 3.42414 3.43726 3.68247 3.75977 3.87153 3.91341 3.94421 3.99820 4.09420 4.19223 4.22862 4.32658 4.37077 4.42341 4.46188 4.49965 4.53899 4.65831 4.72320 4.74107 4.79454 4.86364 4.90925 4.99418 5.00674 5.08677 5.11358 5.12951 5.16050 5.20314 5.24297 5.29355 5.33618 5.47417 5.50952 5.51971 5.60756 5.84853 5.91999 5.95696 6.39630 6.45069 6.66570 6.67772 7.26387 7.62467 7.98260 8.62858 9.38370 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.004494 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.549525 B = 6229.454444 C = 7785.428898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.094 3.906 4 N -0.606 5.606 5 C 0.491 3.509 6 O -0.519 6.519 7 C -0.015 4.015 8 H 0.114 0.886 9 C -0.102 4.102 10 C -0.101 4.101 11 C -0.041 4.041 12 C 0.080 3.920 13 N -0.314 5.314 14 N -0.473 5.473 15 H 0.453 0.547 16 C 0.068 3.932 17 C -0.241 4.241 18 C 0.148 3.852 19 H 0.127 0.873 20 C -0.145 4.145 21 C 0.171 3.829 22 N -0.591 5.591 23 C -0.212 4.212 24 H 0.062 0.938 25 C -0.072 4.072 26 N -0.949 5.949 27 Si 0.970 3.030 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.276 1.276 31 C 0.140 3.860 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.199 0.801 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.056 0.944 49 H -0.020 1.020 50 H 0.240 0.760 51 H 0.017 0.983 52 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.465 -0.677 -4.355 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.028 4.028 4 N -0.341 5.341 5 C 0.278 3.722 6 O -0.392 6.392 7 C -0.037 4.037 8 H 0.132 0.868 9 C -0.140 4.140 10 C -0.139 4.139 11 C -0.080 4.080 12 C -0.088 4.088 13 N -0.136 5.136 14 N -0.182 5.182 15 H 0.300 0.700 16 C -0.079 4.079 17 C -0.253 4.253 18 C 0.044 3.956 19 H 0.144 0.856 20 C -0.185 4.185 21 C 0.046 3.954 22 N -0.315 5.315 23 C -0.342 4.342 24 H 0.080 0.920 25 C -0.264 4.264 26 N -0.601 5.601 27 Si 0.800 3.200 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.202 1.202 31 C 0.014 3.986 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.122 0.878 45 H 0.216 0.784 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.074 0.926 49 H -0.002 1.002 50 H 0.049 0.951 51 H 0.035 0.965 52 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -24.068 -0.766 -5.653 24.735 hybrid contribution 1.660 -0.314 0.248 1.707 sum -22.408 -1.079 -5.404 23.076 Atomic orbital electron populations 1.21696 0.93154 1.02749 1.02749 1.21918 0.97580 0.95321 1.03067 1.22114 0.77876 0.99046 1.03755 1.47904 1.07394 1.35223 1.43613 1.21125 0.88255 0.83127 0.79675 1.91074 1.16436 1.71399 1.60277 1.19686 0.96598 0.93488 0.93931 0.86825 1.21377 0.97412 0.95379 0.99872 1.21510 1.01217 0.97580 0.93546 1.20249 1.00324 0.88583 0.98798 1.22668 0.96898 0.98003 0.91243 1.76926 1.20465 0.95403 1.20850 1.46302 1.46527 1.17383 1.08025 0.70032 1.22733 0.97401 0.98767 0.89001 1.19716 1.10827 0.98086 0.96663 1.21953 0.91065 0.92034 0.90547 0.85563 1.23302 0.97800 1.00345 0.97031 1.21497 0.92947 0.89993 0.90969 1.44310 1.03780 1.37965 1.45448 1.19225 0.85138 1.13333 1.16508 0.91966 1.25407 1.01544 0.98629 1.00777 1.70083 1.32217 1.24104 1.33659 0.85261 0.80557 0.77151 0.77059 1.21788 1.21759 1.20192 1.21467 0.88302 0.92534 0.96315 0.91706 0.92025 0.91601 0.91796 0.90612 0.90424 0.88641 0.92491 0.94163 0.89281 0.89638 0.90516 0.87812 0.78421 0.90280 0.90694 0.92556 1.00177 0.95056 0.96502 0.97270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.99 0.71 -0.50 16 2 C -0.14 -1.80 4.70 30.60 0.14 -1.66 16 3 C 0.09 1.61 4.48 86.38 0.39 2.00 16 4 N -0.61 -17.33 2.79 -791.24 -2.21 -19.54 16 5 C 0.49 17.76 5.52 87.66 0.48 18.25 16 6 O -0.52 -25.90 9.76 -3.04 -0.03 -25.93 16 7 C -0.01 -0.41 2.03 -12.09 -0.02 -0.44 16 8 H 0.11 2.55 7.24 -2.39 -0.02 2.54 16 9 C -0.10 -3.12 4.86 30.73 0.15 -2.97 16 10 C -0.10 -2.12 5.86 30.73 0.18 -1.94 16 11 C -0.04 -0.89 6.31 30.05 0.19 -0.70 16 12 C 0.08 2.11 7.10 43.44 0.31 2.41 16 13 N -0.31 -8.19 12.68 -47.14 -0.60 -8.79 16 14 N -0.47 -9.50 7.37 -57.89 -0.43 -9.93 16 15 H 0.45 5.75 8.96 -213.18 -1.91 3.84 16 16 C 0.07 1.44 10.10 83.34 0.84 2.28 16 17 C -0.24 -6.24 5.14 -20.10 -0.10 -6.34 16 18 C 0.15 4.87 3.42 46.18 0.16 5.02 16 19 H 0.13 3.10 5.89 -2.39 -0.01 3.09 16 20 C -0.15 -5.47 6.76 31.98 0.22 -5.25 16 21 C 0.17 9.09 5.01 86.85 0.43 9.52 16 22 N -0.59 -33.10 2.17 -691.98 -1.50 -34.60 16 23 C -0.21 -13.18 10.27 84.03 0.86 -12.32 16 24 H 0.06 3.82 7.83 -2.91 -0.02 3.79 16 25 C -0.07 -4.48 5.49 84.86 0.47 -4.01 16 26 N -0.95 -61.24 10.09 21.65 0.22 -61.02 16 27 Si 0.97 50.25 29.55 68.60 2.03 52.28 16 28 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 29 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 30 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 31 C 0.14 6.31 5.93 86.73 0.51 6.82 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.06 0.88 7.16 -2.39 -0.02 0.87 16 36 H 0.08 0.99 6.67 -2.39 -0.02 0.98 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.49 3.85 -2.39 -0.01 1.48 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.55 7.49 -2.39 -0.02 1.53 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.09 1.48 8.10 -2.38 -0.02 1.46 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.20 3.33 4.15 -2.91 -0.01 3.31 16 46 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.06 3.44 5.87 -2.39 -0.01 3.42 16 49 H -0.02 -1.17 6.37 -2.39 -0.02 -1.18 16 50 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 51 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.01 0.46 6.45 -2.39 -0.02 0.45 16 Total: -1.00 -85.80 382.52 2.44 -83.36 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -0.96 Total: 14.00 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.92 Total: 10.17 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -4.52 Total: -133.88 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.03 Total: -25.93 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.03 Total: 52.28 kcal Total: -85.80 2.44 -83.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753316757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.752 kcal (2) G-P(sol) polarization free energy of solvation -85.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds