Wall clock time and date at job start Wed Apr 1 2020 05:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47295 * 2 1 4 4 N 1.46492 * 109.47538 * 180.02562 * 3 2 1 5 5 C 1.34784 * 120.00087 * 276.39203 * 4 3 2 6 6 O 1.21572 * 120.00175 * 175.84217 * 5 4 3 7 7 C 1.47712 * 119.99349 * 355.84025 * 5 4 3 8 8 C 1.41649 * 126.49133 * 185.91059 * 7 5 4 9 9 C 1.34699 * 105.33245 * 179.97438 * 8 7 5 10 10 N 1.35501 * 107.71560 * 0.03489 * 9 8 7 11 11 N 1.28425 * 109.71621 * 359.67250 * 10 9 8 12 12 C 1.46997 * 123.90024 * 179.97438 * 10 9 8 13 13 C 1.53137 * 108.89027 * 342.33854 * 12 10 9 14 14 C 1.53154 * 109.59942 * 51.12496 * 13 12 10 15 15 C 1.50800 * 127.53521 * 180.02562 * 9 8 7 16 16 C 1.46501 * 120.00161 * 96.38457 * 4 3 2 17 17 H 1.08997 * 110.63869 * 358.31457 * 16 4 3 18 18 C 1.55152 * 110.87339 * 235.06849 * 16 4 3 19 19 C 1.55131 * 101.48661 * 205.89824 * 18 16 4 20 20 N 1.47432 * 104.72133 * 37.29666 * 19 18 16 21 21 C 1.36932 * 125.64989 * 155.81816 * 20 19 18 22 22 H 1.08003 * 119.99948 * 179.68502 * 21 20 19 23 23 C 1.38816 * 119.99872 * 359.69301 * 21 20 19 24 24 N 1.31617 * 120.00038 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99765 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47060 * 89.99942 * 25 23 21 27 27 H 1.48497 * 109.46968 * 209.99637 * 25 23 21 28 28 H 1.48503 * 109.47326 * 329.99954 * 25 23 21 29 29 C 1.47026 * 108.70189 * 335.55053 * 20 19 18 30 30 H 1.08995 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47187 * 299.99748 * 1 2 3 32 32 H 1.08997 * 109.47644 * 59.99529 * 1 2 3 33 33 H 1.09002 * 109.47029 * 240.00504 * 2 1 3 34 34 H 1.08995 * 109.47372 * 120.00011 * 2 1 3 35 35 H 1.09005 * 109.47002 * 59.99598 * 3 2 1 36 36 H 1.09007 * 109.47083 * 300.00666 * 3 2 1 37 37 H 1.08002 * 127.33087 * 0.02562 * 8 7 5 38 38 H 1.09005 * 109.56359 * 222.51626 * 12 10 9 39 39 H 1.08999 * 109.66739 * 102.22745 * 12 10 9 40 40 H 1.08998 * 109.45527 * 291.08409 * 13 12 10 41 41 H 1.09000 * 109.45116 * 171.15974 * 13 12 10 42 42 H 1.09001 * 109.54594 * 170.54093 * 14 13 12 43 43 H 1.08998 * 109.54337 * 50.27945 * 14 13 12 44 44 H 1.08999 * 109.71483 * 284.13274 * 15 9 8 45 45 H 1.09001 * 109.71707 * 44.77205 * 15 9 8 46 46 H 1.09000 * 111.00762 * 324.13590 * 18 16 4 47 47 H 1.08997 * 111.01038 * 87.99210 * 18 16 4 48 48 H 1.08994 * 110.49570 * 278.45604 * 19 18 16 49 49 H 1.08994 * 110.34554 * 156.05760 * 19 18 16 50 50 H 0.96998 * 119.99691 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.88086 * 120.70414 * 29 20 19 52 52 H 1.08997 * 109.88656 * 241.71684 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1794 1.3125 1.1591 6 8 5.3927 1.2365 1.1515 7 6 3.4442 1.2623 2.4392 8 6 4.0121 1.2463 3.7368 9 6 2.9653 1.1988 4.5832 10 7 1.8333 1.1860 3.8386 11 7 2.1348 1.2300 2.5910 12 6 0.4786 1.1362 4.4071 13 6 0.5681 0.6643 5.8612 14 6 1.6016 1.5087 6.6126 15 6 3.0033 1.1645 6.0903 16 6 4.2369 1.5839 -1.2618 17 1 3.5457 1.6479 -2.1021 18 6 5.2322 0.4099 -1.4578 19 6 6.2987 1.0595 -2.3782 20 7 6.4147 2.4477 -1.8956 21 6 7.5059 3.2594 -2.0547 22 1 7.4903 4.2674 -1.6672 23 6 8.6322 2.7868 -2.7144 24 7 8.6513 1.5584 -3.1865 25 14 10.1205 3.8945 -2.9322 26 1 11.0346 3.7287 -1.7737 27 1 10.8333 3.5258 -4.1817 28 1 9.6770 5.3093 -3.0143 29 6 5.1622 2.8184 -1.2206 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 5.0611 1.2685 3.9929 38 1 -0.1324 0.4388 3.8339 39 1 0.0294 2.1287 4.3723 40 1 0.8687 -0.3831 5.8851 41 1 -0.4056 0.7731 6.3387 42 1 1.5462 1.2891 7.6788 43 1 1.3988 2.5666 6.4460 44 1 3.2892 0.1685 6.4284 45 1 3.7214 1.8981 6.4569 46 1 5.6670 0.1032 -0.5065 47 1 4.7504 -0.4320 -1.9548 48 1 5.9666 1.0453 -3.4162 49 1 7.2525 0.5418 -2.2771 50 1 9.4382 1.2283 -3.6477 51 1 5.3663 3.0943 -0.1860 52 1 4.6935 3.6534 -1.7413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753317607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:59 Heat of formation + Delta-G solvation = 81.932040 kcal Electronic energy + Delta-G solvation = -31955.272221 eV Core-core repulsion = 27957.696943 eV Total energy + Delta-G solvation = -3997.575278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.86132 -39.69701 -37.06327 -36.45533 -35.69553 -33.26316 -32.86354 -31.69269 -30.49380 -28.95062 -28.82718 -27.22624 -25.94048 -25.00386 -24.22607 -23.04805 -22.33570 -21.57950 -20.52851 -19.99709 -19.76855 -18.05705 -17.11408 -16.78690 -16.59166 -16.38333 -15.49657 -14.86393 -14.76860 -14.61503 -14.55122 -14.40626 -14.28932 -14.03634 -13.70564 -13.59163 -13.26193 -13.04973 -12.76670 -12.34126 -12.32544 -12.18394 -11.88972 -11.62958 -11.57572 -11.49033 -11.42789 -11.36390 -11.24431 -10.88742 -10.79298 -10.72967 -10.59740 -10.37666 -10.28929 -9.96899 -9.64387 -9.39125 -9.05558 -9.01679 -8.93346 -8.46334 -8.08415 -6.61013 -5.45862 -2.86115 1.68726 2.16460 2.28217 3.33813 3.52511 3.56723 3.58732 3.73788 3.92153 4.13248 4.21600 4.32199 4.62233 4.66717 4.73218 4.87448 4.92960 5.05059 5.11734 5.13326 5.19631 5.24876 5.35606 5.41763 5.47761 5.50497 5.59685 5.64633 5.66773 5.67845 5.72771 5.81914 5.88620 5.92453 5.97627 6.00996 6.03314 6.20525 6.27694 6.50365 6.54480 6.71533 6.72043 6.81123 6.82323 6.95074 7.38685 7.69190 7.81289 7.83612 7.97553 8.06647 8.56753 8.67349 9.41371 10.02630 10.68538 11.57912 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.002859 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.828641 B = 9790.498209 C =11072.728689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.106 3.894 4 N -0.594 5.594 5 C 0.592 3.408 6 O -0.501 6.501 7 C -0.005 4.005 8 C -0.175 4.175 9 C 0.009 3.991 10 N -0.289 5.289 11 N -0.255 5.255 12 C 0.123 3.877 13 C -0.136 4.136 14 C -0.127 4.127 15 C -0.051 4.051 16 C 0.136 3.864 17 H 0.088 0.912 18 C -0.157 4.157 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.211 4.211 22 H 0.075 0.925 23 C -0.015 4.015 24 N -0.924 5.924 25 Si 0.913 3.087 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.134 3.866 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.050 0.950 48 H 0.008 0.992 49 H 0.107 0.893 50 H 0.250 0.750 51 H 0.034 0.966 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.110 -3.825 19.500 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C -0.018 4.018 4 N -0.326 5.326 5 C 0.378 3.622 6 O -0.373 6.373 7 C -0.165 4.165 8 C -0.203 4.203 9 C -0.115 4.115 10 N -0.078 5.078 11 N -0.090 5.090 12 C 0.003 3.997 13 C -0.174 4.174 14 C -0.164 4.164 15 C -0.090 4.090 16 C 0.033 3.967 17 H 0.106 0.894 18 C -0.197 4.197 19 C 0.033 3.967 20 N -0.322 5.322 21 C -0.340 4.340 22 H 0.093 0.907 23 C -0.210 4.210 24 N -0.573 5.573 25 Si 0.744 3.256 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.209 1.209 29 C 0.007 3.993 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.178 0.822 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.069 0.931 48 H 0.026 0.974 49 H 0.125 0.875 50 H 0.060 0.940 51 H 0.051 0.949 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -23.363 -3.855 18.817 30.245 hybrid contribution 1.232 0.574 0.188 1.372 sum -22.131 -3.281 19.005 29.356 Atomic orbital electron populations 1.21622 0.95685 1.01158 1.01484 1.21816 0.95538 0.97521 1.02082 1.21916 0.79271 0.97123 1.03457 1.47812 1.06527 1.71893 1.06391 1.16970 0.86304 0.77516 0.81444 1.90891 1.12397 1.48143 1.85912 1.22177 0.89349 1.09515 0.95458 1.21335 0.99854 1.08677 0.90432 1.21203 0.86428 1.08428 0.95408 1.45830 1.06966 1.51927 1.03116 1.73637 1.16366 1.19721 0.99238 1.22056 0.79266 1.03828 0.94566 1.21926 1.01312 1.01190 0.92991 1.21695 0.93931 1.00384 1.00415 1.20336 0.98068 1.03437 0.87156 1.22209 0.93275 0.98000 0.83222 0.89413 1.23512 0.97708 0.95783 1.02674 1.21895 0.97979 0.84992 0.91846 1.44306 1.11223 1.11637 1.65028 1.19063 0.91003 0.94386 1.29554 0.90732 1.24753 0.98220 0.96887 1.01094 1.69802 1.28706 1.15159 1.43667 0.86080 0.82968 0.79427 0.77100 1.21712 1.21804 1.20894 1.21476 0.87745 0.93392 0.96706 0.93142 0.92817 0.92921 0.92259 0.91916 0.88276 0.91161 0.82181 0.88378 0.89191 0.90413 0.88911 0.90192 0.91087 0.89609 0.89119 0.89519 0.93100 0.97360 0.87519 0.93953 0.94851 0.96595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.58 5.78 -26.73 -0.15 -1.74 16 3 C 0.11 1.43 4.99 -4.04 -0.02 1.41 16 4 N -0.59 -10.40 2.56 -165.17 -0.42 -10.82 16 5 C 0.59 11.41 6.72 -12.39 -0.08 11.32 16 6 O -0.50 -11.76 13.32 5.30 0.07 -11.69 16 7 C 0.00 -0.07 6.66 -82.69 -0.55 -0.63 16 8 C -0.18 -2.48 10.76 -39.53 -0.43 -2.91 16 9 C 0.01 0.09 6.57 -82.18 -0.54 -0.45 16 10 N -0.29 -3.01 3.74 -56.71 -0.21 -3.22 16 11 N -0.25 -3.35 7.38 33.46 0.25 -3.10 16 12 C 0.12 0.71 7.17 -3.70 -0.03 0.69 16 13 C -0.14 -0.51 5.91 -26.58 -0.16 -0.67 16 14 C -0.13 -0.54 5.98 -26.40 -0.16 -0.70 16 15 C -0.05 -0.34 6.28 -27.58 -0.17 -0.51 16 16 C 0.14 2.72 3.43 -66.10 -0.23 2.49 16 17 H 0.09 1.57 7.80 -51.93 -0.40 1.17 16 18 C -0.16 -3.50 6.41 -24.46 -0.16 -3.65 16 19 C 0.16 4.24 5.91 -2.40 -0.01 4.22 16 20 N -0.60 -16.89 3.39 -169.92 -0.58 -17.46 16 21 C -0.21 -6.41 10.27 -15.06 -0.15 -6.56 16 22 H 0.07 2.20 7.83 -52.48 -0.41 1.78 16 23 C -0.01 -0.45 5.49 -17.43 -0.10 -0.54 16 24 N -0.92 -28.70 10.08 55.49 0.56 -28.14 16 25 Si 0.91 23.52 29.55 -169.99 -5.02 18.50 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 29 C 0.13 3.21 6.51 -3.06 -0.02 3.19 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.85 7.11 -51.93 -0.37 0.48 16 35 H 0.10 1.32 5.32 -51.93 -0.28 1.05 16 36 H 0.07 0.86 7.84 -51.93 -0.41 0.46 16 37 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.33 8.11 -51.93 -0.42 -0.09 16 41 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.09 2.11 5.69 -51.93 -0.30 1.82 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.11 3.22 5.85 -51.93 -0.30 2.91 16 50 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 51 H 0.03 0.86 6.40 -51.93 -0.33 0.53 16 52 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -36.59 398.37 -10.64 -47.23 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.70 Total: -1.33 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.59 Total: 4.04 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.40 Total: -62.75 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.69 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.50 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.59 -10.64 -47.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753317607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.159 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds