Wall clock time and date at job start Wed Apr 1 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47406 * 2 1 4 4 N 1.46498 * 109.47506 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99801 * 273.90550 * 4 3 2 6 6 O 1.21277 * 120.00095 * 184.86414 * 5 4 3 7 7 C 1.50702 * 120.00000 * 4.87220 * 5 4 3 8 8 H 1.09002 * 109.46533 * 40.26143 * 7 5 4 9 9 C 1.53150 * 109.46973 * 160.25243 * 7 5 4 10 10 C 1.53397 * 109.24098 * 189.49870 * 9 7 5 11 11 C 1.51043 * 108.20784 * 311.17981 * 10 9 7 12 12 N 1.30089 * 127.39241 * 195.93545 * 11 10 9 13 13 C 1.34291 * 109.21674 * 179.91454 * 12 11 10 14 14 C 1.34859 * 108.06706 * 0.04296 * 13 12 11 15 15 N 1.35417 * 123.98478 * 15.93947 * 11 10 9 16 16 C 1.46478 * 124.82153 * 0.14395 * 15 11 10 17 17 C 1.46497 * 120.00251 * 93.91006 * 4 3 2 18 18 H 1.08998 * 110.88194 * 349.18268 * 17 4 3 19 19 C 1.55156 * 111.00582 * 113.06180 * 17 4 3 20 20 C 1.54332 * 102.93859 * 82.61349 * 19 17 4 21 21 N 1.47022 * 107.27092 * 22.19111 * 20 19 17 22 22 C 1.36932 * 125.64322 * 180.79444 * 21 20 19 23 23 H 1.07999 * 119.99850 * 180.02562 * 22 21 20 24 24 C 1.38813 * 120.00234 * 0.02726 * 22 21 20 25 25 N 1.31609 * 120.00200 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99992 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47054 * 89.99616 * 26 24 22 28 28 H 1.48500 * 109.47203 * 209.99774 * 26 24 22 29 29 H 1.48500 * 109.46886 * 330.00080 * 26 24 22 30 30 C 1.47427 * 108.70494 * 1.05878 * 21 20 19 31 31 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47648 * 300.00194 * 1 2 3 33 33 H 1.08999 * 109.46995 * 60.00435 * 1 2 3 34 34 H 1.08996 * 109.47521 * 239.99536 * 2 1 3 35 35 H 1.09007 * 109.47326 * 119.99520 * 2 1 3 36 36 H 1.09010 * 109.47315 * 59.99278 * 3 2 1 37 37 H 1.09002 * 109.47173 * 299.99892 * 3 2 1 38 38 H 1.09005 * 109.50621 * 309.42587 * 9 7 5 39 39 H 1.08999 * 109.50866 * 69.51910 * 9 7 5 40 40 H 1.09001 * 109.71590 * 70.85280 * 10 9 7 41 41 H 1.08992 * 109.71649 * 191.45763 * 10 9 7 42 42 H 1.07999 * 125.96653 * 180.02562 * 13 12 11 43 43 H 1.08007 * 126.64981 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.58877 * 257.31898 * 16 15 11 45 45 H 1.09002 * 109.58311 * 136.90379 * 16 15 11 46 46 H 1.08998 * 110.72148 * 324.25124 * 19 17 4 47 47 H 1.08999 * 110.71741 * 200.97213 * 19 17 4 48 48 H 1.09005 * 109.87762 * 262.77623 * 20 19 17 49 49 H 1.08993 * 110.01043 * 141.68342 * 20 19 17 50 50 H 0.96999 * 120.00243 * 180.02562 * 25 24 22 51 51 H 1.09002 * 110.36302 * 94.70845 * 30 21 20 52 52 H 1.08998 * 110.36501 * 217.03162 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.3628 1.1636 6 8 5.3888 1.4515 1.1711 7 6 3.4304 1.1633 2.4561 8 1 2.6206 0.4505 2.3003 9 6 4.3877 0.6233 3.5226 10 6 3.5818 0.1989 4.7569 11 6 2.6394 1.3236 5.1149 12 7 1.9993 1.4918 6.2349 13 6 1.2643 2.6132 6.1598 14 6 1.4580 3.1595 4.9422 15 7 2.3268 2.3436 4.2808 16 6 2.8491 2.5028 2.9216 17 6 4.2370 1.5292 -1.2666 18 1 3.5647 1.3957 -2.1141 19 6 5.0064 2.8723 -1.3734 20 6 6.2999 2.5936 -0.5790 21 7 6.4903 1.1360 -0.5523 22 6 7.5173 0.4767 0.0687 23 1 7.5685 -0.6014 0.0299 24 6 8.4924 1.1939 0.7481 25 7 8.4303 2.5077 0.7949 26 14 9.8930 0.2942 1.5958 27 1 11.0242 0.1336 0.6473 28 1 10.3429 1.0775 2.7746 29 1 9.4253 -1.0435 2.0395 30 6 5.3960 0.5024 -1.3102 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 4.9264 -0.2374 3.1260 39 1 5.0987 1.4011 3.8010 40 1 3.0106 -0.7017 4.5314 41 1 4.2584 0.0063 5.5894 42 1 0.6288 3.0083 6.9385 43 1 1.0114 4.0675 4.5645 44 1 3.6315 3.2617 2.9173 45 1 2.0424 2.8030 2.2530 46 1 4.4377 3.6802 -0.9130 47 1 5.2351 3.1041 -2.4136 48 1 6.1993 2.9730 0.4380 49 1 7.1488 3.0695 -1.0698 50 1 9.1119 3.0089 1.2693 51 1 5.7035 0.3208 -2.3401 52 1 5.0948 -0.4303 -0.8333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753317713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:33 Heat of formation + Delta-G solvation = 101.907746 kcal Electronic energy + Delta-G solvation = -33522.053124 eV Core-core repulsion = 29525.344058 eV Total energy + Delta-G solvation = -3996.709066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.29337 -40.13851 -37.12820 -35.93408 -35.23738 -33.19165 -32.91009 -31.57282 -29.94390 -28.96469 -28.44035 -27.34296 -25.87894 -24.68541 -24.27971 -22.90469 -21.70878 -21.33069 -20.75957 -19.87710 -18.93593 -18.07300 -17.10235 -17.01127 -16.45544 -15.99588 -15.58468 -14.92956 -14.73545 -14.43042 -14.38273 -14.09714 -14.02104 -13.79689 -13.74971 -13.64454 -13.30262 -12.90134 -12.87045 -12.29518 -12.04999 -11.92773 -11.74200 -11.66126 -11.63922 -11.51216 -11.37403 -11.10927 -10.86761 -10.76318 -10.73837 -10.68199 -10.66816 -10.04861 -9.97904 -9.89283 -9.69207 -9.52581 -9.44734 -8.56815 -8.48211 -8.30521 -7.85661 -6.30346 -5.44572 -2.70255 2.08730 2.71177 3.17976 3.30783 3.40619 3.51101 3.56362 3.57965 4.35412 4.49286 4.55722 4.62640 4.69355 4.78138 4.86513 4.92428 5.05611 5.20143 5.21760 5.29089 5.32390 5.39612 5.45638 5.47294 5.49356 5.54793 5.60289 5.66882 5.69204 5.75041 5.85230 5.87114 5.92593 5.94855 6.02167 6.11567 6.19705 6.23735 6.36546 6.42626 6.49251 6.57206 6.60140 6.73074 6.79325 7.18398 7.23834 7.74800 7.88253 7.95467 8.11225 8.15616 8.52325 9.08442 9.48089 10.10277 10.75983 11.68257 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.004812 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.628510 B = 5817.577216 C = 7605.627410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.112 3.888 4 N -0.613 5.613 5 C 0.461 3.539 6 O -0.384 6.384 7 C -0.117 4.117 8 H 0.093 0.907 9 C -0.105 4.105 10 C -0.034 4.034 11 C 0.214 3.786 12 N -0.495 5.495 13 C -0.035 4.035 14 C -0.059 4.059 15 N -0.451 5.451 16 C 0.114 3.886 17 C 0.135 3.865 18 H 0.080 0.920 19 C -0.160 4.160 20 C 0.194 3.806 21 N -0.568 5.568 22 C -0.197 4.197 23 H 0.066 0.934 24 C -0.003 4.003 25 N -0.918 5.918 26 Si 0.897 3.103 27 H -0.294 1.294 28 H -0.294 1.294 29 H -0.286 1.286 30 C 0.130 3.870 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.167 0.833 43 H 0.172 0.828 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.027 0.973 50 H 0.244 0.756 51 H 0.021 0.979 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.821 -0.139 0.118 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.012 4.012 4 N -0.351 5.351 5 C 0.243 3.757 6 O -0.247 6.247 7 C -0.140 4.140 8 H 0.111 0.889 9 C -0.143 4.143 10 C -0.073 4.073 11 C -0.048 4.048 12 N -0.214 5.214 13 C -0.183 4.183 14 C -0.192 4.192 15 N -0.133 5.133 16 C -0.008 4.008 17 C 0.030 3.970 18 H 0.098 0.902 19 C -0.200 4.200 20 C 0.069 3.931 21 N -0.293 5.293 22 C -0.326 4.326 23 H 0.084 0.916 24 C -0.198 4.198 25 N -0.567 5.567 26 Si 0.729 3.271 27 H -0.222 1.222 28 H -0.221 1.221 29 H -0.212 1.212 30 C 0.002 3.998 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.184 0.816 43 H 0.189 0.811 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.045 0.955 50 H 0.054 0.946 51 H 0.038 0.962 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.784 -0.503 0.811 17.810 hybrid contribution 0.308 0.265 -0.216 0.460 sum -17.477 -0.238 0.596 17.488 Atomic orbital electron populations 1.21709 0.95559 1.01808 1.01646 1.22056 0.95604 0.97848 1.02905 1.21598 0.81127 0.96265 1.02247 1.47805 1.04765 1.76525 1.05971 1.20195 0.89501 0.82054 0.83997 1.91542 1.10258 1.38865 1.84077 1.21730 0.99759 0.96436 0.96027 0.88940 1.21510 0.96879 1.03455 0.92456 1.20273 0.95039 0.92963 0.99061 1.23411 1.01439 0.93211 0.86782 1.70061 1.11337 1.18512 1.21495 1.22312 1.04122 0.94938 0.96935 1.22530 1.00923 1.00123 0.95619 1.45407 1.34401 1.20113 1.13415 1.21996 0.99641 0.99045 0.80119 1.22260 0.93115 0.97345 0.84247 0.90187 1.23377 1.00097 0.95874 1.00605 1.21127 0.89742 0.84800 0.97391 1.44146 1.24839 1.01515 1.58820 1.18755 0.98779 0.89986 1.25059 0.91625 1.24535 0.98746 0.95414 1.01110 1.69938 1.35055 1.04197 1.47548 0.86336 0.83046 0.78474 0.79197 1.22244 1.22084 1.21170 1.21766 0.88480 0.94352 0.95190 0.92619 0.92900 0.92652 0.91368 0.91761 0.91495 0.90758 0.89022 0.90024 0.89512 0.88537 0.81571 0.81082 0.89016 0.89014 0.92616 0.92180 0.91931 0.95460 0.94556 0.96179 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.15 -1.36 6.06 -26.73 -0.16 -1.52 16 3 C 0.11 1.12 5.03 -4.04 -0.02 1.10 16 4 N -0.61 -8.68 2.56 -163.67 -0.42 -9.10 16 5 C 0.46 7.69 6.28 -10.98 -0.07 7.62 16 6 O -0.38 -8.54 8.10 5.56 0.05 -8.50 16 7 C -0.12 -1.57 1.72 -91.56 -0.16 -1.73 16 8 H 0.09 1.11 5.61 -51.93 -0.29 0.82 16 9 C -0.10 -1.54 4.60 -26.45 -0.12 -1.66 16 10 C -0.03 -0.44 6.33 -27.51 -0.17 -0.62 16 11 C 0.21 3.11 7.65 -155.25 -1.19 1.92 16 12 N -0.50 -7.72 11.24 -10.62 -0.12 -7.84 16 13 C -0.03 -0.45 11.87 -17.68 -0.21 -0.66 16 14 C -0.06 -0.69 11.64 -16.76 -0.20 -0.88 16 15 N -0.45 -5.89 3.13 -113.75 -0.36 -6.25 16 16 C 0.11 1.39 6.04 -3.92 -0.02 1.37 16 17 C 0.13 2.14 3.76 -65.79 -0.25 1.89 16 18 H 0.08 1.04 7.94 -51.93 -0.41 0.62 16 19 C -0.16 -2.87 6.53 -24.89 -0.16 -3.03 16 20 C 0.19 4.65 4.21 -3.06 -0.01 4.64 16 21 N -0.57 -14.08 1.76 -170.07 -0.30 -14.38 16 22 C -0.20 -5.49 8.97 -15.06 -0.14 -5.62 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 25 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 26 Si 0.90 22.84 29.55 -169.99 -5.02 17.81 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 C 0.13 2.59 6.27 -2.53 -0.02 2.58 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.67 6.38 -51.93 -0.33 0.34 16 36 H 0.07 0.61 4.72 -51.92 -0.25 0.37 16 37 H 0.07 0.65 7.97 -51.93 -0.41 0.24 16 38 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 39 H 0.08 1.41 8.12 -51.93 -0.42 0.98 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.17 1.44 8.06 -52.48 -0.42 1.01 16 44 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 45 H 0.09 0.91 5.81 -51.93 -0.30 0.61 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.06 1.70 5.52 -51.93 -0.29 1.41 16 49 H 0.03 0.75 7.48 -51.93 -0.39 0.36 16 50 H 0.24 7.22 8.31 -40.82 -0.34 6.88 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 52 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -33.89 389.79 -10.90 -44.79 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.55 Total: -0.03 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.62 Total: 4.45 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.62 Total: -64.41 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.05 Total: -8.50 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.89 -10.90 -44.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753317713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.698 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds