Wall clock time and date at job start Wed Apr 1 2020 05:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47406 * 2 1 4 4 N 1.46498 * 109.47506 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99801 * 273.90550 * 4 3 2 6 6 O 1.21277 * 120.00095 * 184.86414 * 5 4 3 7 7 C 1.50702 * 120.00000 * 4.87220 * 5 4 3 8 8 H 1.09002 * 109.46533 * 40.26143 * 7 5 4 9 9 C 1.53150 * 109.46973 * 160.25243 * 7 5 4 10 10 C 1.53397 * 109.24098 * 189.49870 * 9 7 5 11 11 C 1.51043 * 108.20784 * 311.17981 * 10 9 7 12 12 N 1.30089 * 127.39241 * 195.93545 * 11 10 9 13 13 C 1.34291 * 109.21674 * 179.91454 * 12 11 10 14 14 C 1.34859 * 108.06706 * 0.04296 * 13 12 11 15 15 N 1.35417 * 123.98478 * 15.93947 * 11 10 9 16 16 C 1.46478 * 124.82153 * 0.14395 * 15 11 10 17 17 C 1.46497 * 120.00251 * 93.91006 * 4 3 2 18 18 H 1.08998 * 110.88194 * 349.18268 * 17 4 3 19 19 C 1.55156 * 111.00582 * 113.06180 * 17 4 3 20 20 C 1.54332 * 102.93859 * 82.61349 * 19 17 4 21 21 N 1.47022 * 107.27092 * 22.19111 * 20 19 17 22 22 C 1.36932 * 125.64322 * 180.79444 * 21 20 19 23 23 H 1.07999 * 119.99850 * 180.02562 * 22 21 20 24 24 C 1.38813 * 120.00234 * 0.02726 * 22 21 20 25 25 N 1.31609 * 120.00200 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99992 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47054 * 89.99616 * 26 24 22 28 28 H 1.48500 * 109.47203 * 209.99774 * 26 24 22 29 29 H 1.48500 * 109.46886 * 330.00080 * 26 24 22 30 30 C 1.47427 * 108.70494 * 1.05878 * 21 20 19 31 31 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47648 * 300.00194 * 1 2 3 33 33 H 1.08999 * 109.46995 * 60.00435 * 1 2 3 34 34 H 1.08996 * 109.47521 * 239.99536 * 2 1 3 35 35 H 1.09007 * 109.47326 * 119.99520 * 2 1 3 36 36 H 1.09010 * 109.47315 * 59.99278 * 3 2 1 37 37 H 1.09002 * 109.47173 * 299.99892 * 3 2 1 38 38 H 1.09005 * 109.50621 * 309.42587 * 9 7 5 39 39 H 1.08999 * 109.50866 * 69.51910 * 9 7 5 40 40 H 1.09001 * 109.71590 * 70.85280 * 10 9 7 41 41 H 1.08992 * 109.71649 * 191.45763 * 10 9 7 42 42 H 1.07999 * 125.96653 * 180.02562 * 13 12 11 43 43 H 1.08007 * 126.64981 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.58877 * 257.31898 * 16 15 11 45 45 H 1.09002 * 109.58311 * 136.90379 * 16 15 11 46 46 H 1.08998 * 110.72148 * 324.25124 * 19 17 4 47 47 H 1.08999 * 110.71741 * 200.97213 * 19 17 4 48 48 H 1.09005 * 109.87762 * 262.77623 * 20 19 17 49 49 H 1.08993 * 110.01043 * 141.68342 * 20 19 17 50 50 H 0.96999 * 120.00243 * 180.02562 * 25 24 22 51 51 H 1.09002 * 110.36302 * 94.70845 * 30 21 20 52 52 H 1.08998 * 110.36501 * 217.03162 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.3628 1.1636 6 8 5.3888 1.4515 1.1711 7 6 3.4304 1.1633 2.4561 8 1 2.6206 0.4505 2.3003 9 6 4.3877 0.6233 3.5226 10 6 3.5818 0.1989 4.7569 11 6 2.6394 1.3236 5.1149 12 7 1.9993 1.4918 6.2349 13 6 1.2643 2.6132 6.1598 14 6 1.4580 3.1595 4.9422 15 7 2.3268 2.3436 4.2808 16 6 2.8491 2.5028 2.9216 17 6 4.2370 1.5292 -1.2666 18 1 3.5647 1.3957 -2.1141 19 6 5.0064 2.8723 -1.3734 20 6 6.2999 2.5936 -0.5790 21 7 6.4903 1.1360 -0.5523 22 6 7.5173 0.4767 0.0687 23 1 7.5685 -0.6014 0.0299 24 6 8.4924 1.1939 0.7481 25 7 8.4303 2.5077 0.7949 26 14 9.8930 0.2942 1.5958 27 1 11.0242 0.1336 0.6473 28 1 10.3429 1.0775 2.7746 29 1 9.4253 -1.0435 2.0395 30 6 5.3960 0.5024 -1.3102 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 4.9264 -0.2374 3.1260 39 1 5.0987 1.4011 3.8010 40 1 3.0106 -0.7017 4.5314 41 1 4.2584 0.0063 5.5894 42 1 0.6288 3.0083 6.9385 43 1 1.0114 4.0675 4.5645 44 1 3.6315 3.2617 2.9173 45 1 2.0424 2.8030 2.2530 46 1 4.4377 3.6802 -0.9130 47 1 5.2351 3.1041 -2.4136 48 1 6.1993 2.9730 0.4380 49 1 7.1488 3.0695 -1.0698 50 1 9.1119 3.0089 1.2693 51 1 5.7035 0.3208 -2.3401 52 1 5.0948 -0.4303 -0.8333 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753317713.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:32 Heat of formation + Delta-G solvation = 82.838910 kcal Electronic energy + Delta-G solvation = -33522.880011 eV Core-core repulsion = 29525.344058 eV Total energy + Delta-G solvation = -3997.535953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.31181 -41.44417 -38.53820 -37.04890 -36.59547 -34.42063 -34.23992 -33.00062 -31.21538 -30.61286 -29.50893 -28.85805 -26.80257 -26.37063 -25.56673 -24.13731 -22.50079 -22.36809 -22.00001 -21.72851 -20.04703 -19.35259 -18.69024 -18.06503 -17.92772 -17.22689 -16.70576 -16.49798 -16.08610 -15.74938 -15.59967 -15.52929 -15.21818 -15.07438 -14.82430 -14.72538 -14.34887 -13.93957 -13.91791 -13.65804 -13.54823 -13.30992 -12.95152 -12.85113 -12.79583 -12.75719 -12.72856 -12.59862 -12.38609 -12.18514 -12.06852 -11.98234 -11.91122 -11.68853 -11.57812 -11.38958 -11.30522 -10.96380 -10.56928 -10.50537 -10.00092 -9.31631 -9.27519 -8.26248 -7.61626 -4.84405 1.10327 1.43366 1.44337 1.51437 1.68123 2.07256 2.16959 2.25871 2.60601 3.31050 3.45477 3.51885 3.53302 3.57388 3.85179 3.92917 3.97944 4.03588 4.09880 4.18660 4.22930 4.26792 4.31100 4.38752 4.42753 4.52443 4.56002 4.57959 4.65978 4.73821 4.80055 4.81591 4.88941 4.94311 4.96409 4.98420 5.05024 5.10253 5.16748 5.20549 5.29803 5.31217 5.37416 5.52665 5.57359 5.86672 5.88867 6.01386 6.12529 6.17303 6.45454 6.76852 7.14502 7.35691 7.80255 8.07380 8.70131 9.49744 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.004812 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.628510 B = 5817.577216 C = 7605.627410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.108 3.892 4 N -0.607 5.607 5 C 0.461 3.539 6 O -0.450 6.450 7 C -0.105 4.105 8 H 0.116 0.884 9 C -0.096 4.096 10 C -0.025 4.025 11 C 0.192 3.808 12 N -0.525 5.525 13 C -0.055 4.055 14 C -0.047 4.047 15 N -0.453 5.453 16 C 0.123 3.877 17 C 0.150 3.850 18 H 0.130 0.870 19 C -0.145 4.145 20 C 0.206 3.794 21 N -0.581 5.581 22 C -0.190 4.190 23 H 0.061 0.939 24 C -0.059 4.059 25 N -0.944 5.944 26 Si 0.950 3.050 27 H -0.293 1.293 28 H -0.304 1.304 29 H -0.277 1.277 30 C 0.123 3.877 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.190 0.810 43 H 0.209 0.791 44 H 0.071 0.929 45 H 0.127 0.873 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.027 0.973 49 H -0.024 1.024 50 H 0.232 0.768 51 H 0.029 0.971 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.933 -0.171 -1.095 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.014 4.014 4 N -0.343 5.343 5 C 0.245 3.755 6 O -0.318 6.318 7 C -0.126 4.126 8 H 0.133 0.867 9 C -0.135 4.135 10 C -0.064 4.064 11 C -0.071 4.071 12 N -0.245 5.245 13 C -0.202 4.202 14 C -0.180 4.180 15 N -0.136 5.136 16 C 0.001 3.999 17 C 0.046 3.954 18 H 0.148 0.852 19 C -0.185 4.185 20 C 0.081 3.919 21 N -0.306 5.306 22 C -0.321 4.321 23 H 0.079 0.921 24 C -0.251 4.251 25 N -0.596 5.596 26 Si 0.782 3.218 27 H -0.220 1.220 28 H -0.231 1.231 29 H -0.202 1.202 30 C -0.003 4.003 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.207 0.793 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.144 0.856 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.044 0.956 49 H -0.006 1.006 50 H 0.041 0.959 51 H 0.046 0.954 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -21.976 -0.569 -0.434 21.988 hybrid contribution 1.501 0.234 0.164 1.528 sum -20.475 -0.334 -0.270 20.480 Atomic orbital electron populations 1.21663 0.93784 1.02191 1.02548 1.21987 0.97005 0.96965 1.02025 1.21916 0.77881 0.97271 1.04333 1.47870 1.06718 1.75071 1.04644 1.20714 0.89043 0.80346 0.85438 1.91538 1.13048 1.41954 1.85211 1.21579 0.99415 0.97818 0.93829 0.86657 1.21326 0.96786 1.01497 0.93894 1.20193 0.94819 0.93545 0.97862 1.23519 1.02172 0.94143 0.87231 1.70019 1.12309 1.20075 1.22111 1.22822 1.04529 0.94547 0.98334 1.23148 0.99462 1.00407 0.94956 1.45487 1.34514 1.20065 1.13499 1.21937 1.00132 0.97392 0.80478 1.22170 0.92720 0.94029 0.86519 0.85200 1.23208 0.97139 0.97622 1.00511 1.20776 0.91104 0.84100 0.95926 1.44274 1.25402 1.02218 1.58705 1.18977 0.99258 0.89914 1.23915 0.92130 1.25131 1.01166 0.96040 1.02773 1.70179 1.35356 1.05301 1.48763 0.85476 0.80780 0.77671 0.77898 1.22049 1.23139 1.20249 1.21973 0.88791 0.95102 0.94443 0.92603 0.92396 0.91337 0.91883 0.93165 0.90094 0.87987 0.90970 0.93650 0.87582 0.88832 0.79326 0.77378 0.91065 0.85566 0.91021 0.90445 0.95550 1.00587 0.95886 0.95359 0.95551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.14 -2.06 6.06 30.59 0.19 -1.87 16 3 C 0.11 1.63 5.03 86.38 0.43 2.07 16 4 N -0.61 -15.44 2.56 -790.14 -2.03 -17.47 16 5 C 0.46 15.13 6.28 87.66 0.55 15.68 16 6 O -0.45 -20.74 8.10 -3.02 -0.02 -20.77 16 7 C -0.10 -2.70 1.72 -11.40 -0.02 -2.72 16 8 H 0.12 2.48 5.61 -2.39 -0.01 2.46 16 9 C -0.10 -2.96 4.60 30.78 0.14 -2.82 16 10 C -0.03 -0.66 6.33 30.09 0.19 -0.47 16 11 C 0.19 5.41 7.65 138.24 1.06 6.46 16 12 N -0.53 -15.86 11.24 -187.51 -2.11 -17.97 16 13 C -0.06 -1.32 11.87 83.54 0.99 -0.33 16 14 C -0.05 -0.96 11.64 83.22 0.97 0.01 16 15 N -0.45 -10.95 3.13 -513.81 -1.61 -12.56 16 16 C 0.12 2.74 6.04 86.47 0.52 3.27 16 17 C 0.15 4.29 3.76 46.38 0.17 4.46 16 18 H 0.13 2.57 7.94 -2.39 -0.02 2.55 16 19 C -0.15 -4.95 6.53 31.79 0.21 -4.74 16 20 C 0.21 10.23 4.21 86.73 0.36 10.59 16 21 N -0.58 -29.61 1.76 -691.98 -1.22 -30.82 16 22 C -0.19 -11.01 8.97 84.03 0.75 -10.26 16 23 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 24 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 25 N -0.94 -59.80 10.31 21.65 0.22 -59.58 16 26 Si 0.95 49.10 29.55 68.60 2.03 51.13 16 27 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 28 H -0.30 -16.06 7.11 99.48 0.71 -15.35 16 29 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 30 C 0.12 4.79 6.27 86.85 0.54 5.34 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 0.88 6.38 -2.38 -0.02 0.86 16 36 H 0.08 1.04 4.72 -2.38 -0.01 1.03 16 37 H 0.10 1.11 7.97 -2.39 -0.02 1.09 16 38 H 0.07 2.45 8.10 -2.38 -0.02 2.43 16 39 H 0.04 1.70 8.12 -2.39 -0.02 1.68 16 40 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 43 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 44 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 45 H 0.13 1.94 5.81 -2.39 -0.01 1.93 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.03 1.52 5.52 -2.38 -0.01 1.51 16 49 H -0.02 -1.40 7.48 -2.39 -0.02 -1.42 16 50 H 0.23 14.61 8.31 -92.71 -0.77 13.83 16 51 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -80.95 389.79 4.42 -76.53 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.91 Total: 10.69 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 8.25 Total: 20.82 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -6.74 Total: -138.40 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.02 Total: -20.77 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.03 Total: 51.13 kcal Total: -80.95 4.42 -76.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753317713.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.372 kcal (2) G-P(sol) polarization free energy of solvation -80.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds