Wall clock time and date at job start Wed Apr 1 2020 04:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70171 * 2 1 4 4 C 1.53194 * 109.58639 * 120.35517 * 2 1 3 5 5 C 1.53038 * 109.31168 * 174.42052 * 4 2 1 6 6 H 1.08999 * 109.45961 * 58.65450 * 5 4 2 7 7 N 1.46493 * 109.46133 * 178.61497 * 5 4 2 8 8 C 1.34781 * 120.00544 * 205.06915 * 7 5 4 9 9 O 1.21632 * 119.99383 * 4.38551 * 8 7 5 10 10 C 1.47162 * 120.00225 * 184.38981 * 8 7 5 11 11 C 1.38404 * 126.88182 * 354.76138 * 10 8 7 12 12 C 1.39674 * 105.35662 * 180.02562 * 11 10 8 13 13 N 1.30867 * 107.86426 * 359.97438 * 12 11 10 14 14 N 1.28447 * 110.92324 * 359.71514 * 13 12 11 15 15 C 1.46495 * 125.18987 * 180.27741 * 14 13 12 16 16 C 1.54272 * 110.03459 * 62.61331 * 15 14 13 17 17 C 1.54886 * 104.19504 * 217.10407 * 16 15 14 18 18 C 1.54886 * 102.74886 * 37.94184 * 17 16 15 19 19 C 1.53872 * 110.03362 * 305.44584 * 15 14 13 20 20 C 1.53045 * 109.53928 * 298.63933 * 5 4 2 21 21 C 1.53192 * 109.31637 * 61.36307 * 20 5 4 22 22 N 1.46926 * 108.77533 * 305.36737 * 21 20 5 23 23 C 1.36926 * 120.63158 * 233.62755 * 22 21 20 24 24 H 1.08001 * 120.00083 * 141.30361 * 23 22 21 25 25 C 1.38811 * 120.00355 * 321.30363 * 23 22 21 26 26 N 1.31625 * 119.99520 * 357.26376 * 25 23 22 27 27 Si 1.86796 * 120.00390 * 177.26953 * 25 23 22 28 28 H 1.48498 * 109.47244 * 90.00071 * 27 25 23 29 29 H 1.48501 * 109.47128 * 209.99957 * 27 25 23 30 30 H 1.48503 * 109.47107 * 329.99676 * 27 25 23 31 31 H 1.08994 * 109.47640 * 180.35183 * 1 2 3 32 32 H 1.09003 * 109.47022 * 300.35868 * 1 2 3 33 33 H 1.09000 * 109.47207 * 60.35329 * 1 2 3 34 34 H 1.08995 * 109.49551 * 294.37343 * 4 2 1 35 35 H 1.09000 * 109.49394 * 54.43796 * 4 2 1 36 36 H 0.97008 * 119.99689 * 25.07011 * 7 5 4 37 37 H 1.08001 * 127.32519 * 359.97438 * 11 10 8 38 38 H 1.08000 * 126.06958 * 180.02562 * 12 11 10 39 39 H 1.09007 * 110.01869 * 184.05351 * 15 14 13 40 40 H 1.09006 * 110.48072 * 335.78624 * 16 15 14 41 41 H 1.09005 * 110.48592 * 98.42445 * 16 15 14 42 42 H 1.08997 * 110.75912 * 279.62006 * 17 16 15 43 43 H 1.09006 * 110.74906 * 156.25519 * 17 16 15 44 44 H 1.09001 * 110.48459 * 203.37113 * 18 17 16 45 45 H 1.09003 * 110.48462 * 80.73299 * 18 17 16 46 46 H 1.08999 * 110.03240 * 238.56766 * 19 15 14 47 47 H 1.08999 * 110.03429 * 359.97438 * 19 15 14 48 48 H 1.09009 * 109.49385 * 301.41005 * 20 5 4 49 49 H 1.09004 * 109.50041 * 181.31737 * 20 5 4 50 50 H 1.09001 * 109.58125 * 65.15482 * 21 20 5 51 51 H 1.08991 * 109.58579 * 185.43766 * 21 20 5 52 52 H 0.97006 * 119.99723 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5674 -0.8480 1.1701 6 1 4.0061 0.1473 1.0993 7 7 4.0652 -1.5157 2.3753 8 6 5.3290 -1.3011 2.7915 9 8 6.0305 -0.4929 2.2136 10 6 5.8601 -2.0447 3.9451 11 6 5.1631 -2.9160 4.7640 12 6 6.0933 -3.3630 5.7052 13 7 7.2391 -2.7883 5.4416 14 7 7.1412 -2.0181 4.4183 15 6 8.2354 -1.2279 3.8487 16 6 9.3530 -2.1620 3.3404 17 6 10.6622 -1.4057 3.6763 18 6 10.3439 -0.7649 5.0500 19 6 8.8655 -0.3396 4.9357 20 6 3.9568 -1.6657 -0.0636 21 6 3.4650 -0.9469 -1.3238 22 7 2.0225 -0.6995 -1.1946 23 6 1.1536 -1.1134 -2.1686 24 1 0.1890 -1.5156 -1.8963 25 6 1.5125 -1.0159 -3.5059 26 7 2.6655 -0.4762 -3.8402 27 14 0.3592 -1.6506 -4.8312 28 1 -0.5561 -0.5605 -5.2544 29 1 1.1527 -2.1117 -5.9986 30 1 -0.4359 -2.7841 -4.2942 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.7660 -0.1668 2.1368 35 1 1.6024 -1.7251 1.2916 36 1 3.4851 -2.1124 2.8738 37 1 4.1213 -3.1911 4.6914 38 1 5.9013 -4.0600 6.5076 39 1 7.8633 -0.6103 3.0311 40 1 9.3191 -3.1174 3.8640 41 1 9.2646 -2.3123 2.2643 42 1 10.8673 -0.6380 2.9301 43 1 11.4989 -2.0995 3.7582 44 1 10.9788 0.1043 5.2218 45 1 10.4702 -1.4947 5.8498 46 1 8.8000 0.7089 4.6453 47 1 8.3569 -0.4962 5.8870 48 1 3.4982 -2.6529 -0.0053 49 1 5.0412 -1.7696 -0.1038 50 1 3.9903 0.0020 -1.4317 51 1 3.6540 -1.5706 -2.1974 52 1 2.9165 -0.4085 -4.7748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947360708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:47 Heat of formation + Delta-G solvation = 48.776223 kcal Electronic energy + Delta-G solvation = -31256.236424 eV Core-core repulsion = 27257.223402 eV Total energy + Delta-G solvation = -3999.013022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.70111 -39.56853 -38.17689 -37.60293 -34.71197 -32.61480 -32.31667 -31.71835 -30.68426 -29.31176 -29.07098 -27.83476 -26.39533 -24.97891 -23.46375 -22.39312 -21.97792 -21.16342 -21.00664 -20.13432 -19.83413 -19.09552 -17.92815 -16.47985 -16.21092 -16.04513 -15.76463 -15.71742 -15.11494 -14.68532 -14.50700 -14.27951 -14.00070 -13.90489 -13.69924 -13.63344 -13.31819 -13.14651 -12.81968 -12.71580 -12.11318 -11.88242 -11.59896 -11.47782 -11.42653 -11.29249 -11.21957 -11.05960 -10.96020 -10.91821 -10.89091 -10.84583 -10.68825 -10.33987 -10.19204 -10.04828 -9.89270 -9.80058 -9.47407 -9.30373 -9.13094 -8.73875 -8.44493 -6.50333 -5.80072 -3.34893 1.21060 2.25739 2.51106 3.21048 3.29417 3.35882 3.42612 3.43279 4.12953 4.23719 4.46256 4.54610 4.57760 4.66207 4.99652 5.07872 5.12030 5.17354 5.22801 5.25633 5.33336 5.34788 5.42311 5.47096 5.53369 5.55727 5.58370 5.60597 5.73324 5.74612 5.84236 5.92288 5.98037 6.02342 6.15187 6.21604 6.32372 6.35488 6.40324 6.42516 6.49315 6.62189 6.67731 6.76545 6.84058 7.04408 7.11390 7.36478 7.54423 7.69333 7.81751 7.98244 8.20953 8.52458 9.23360 9.82124 10.44837 11.28322 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.002413 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.024138 B =11599.995190 C =12391.226434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.172 3.828 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.085 0.915 7 N -0.705 5.705 8 C 0.587 3.413 9 O -0.541 6.541 10 C -0.033 4.033 11 C -0.194 4.194 12 C -0.008 4.008 13 N -0.277 5.277 14 N -0.247 5.247 15 C 0.128 3.872 16 C -0.131 4.131 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.148 4.148 21 C 0.179 3.821 22 N -0.587 5.587 23 C -0.255 4.255 24 H 0.064 0.936 25 C 0.012 3.988 26 N -0.901 5.901 27 Si 0.900 3.100 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.398 0.602 37 H 0.159 0.841 38 H 0.184 0.816 39 H 0.141 0.859 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.051 0.949 50 H 0.021 0.979 51 H 0.085 0.915 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.614 -3.324 19.203 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.103 0.897 7 N -0.355 5.355 8 C 0.372 3.628 9 O -0.420 6.420 10 C -0.162 4.162 11 C -0.223 4.223 12 C -0.184 4.184 13 N -0.109 5.109 14 N -0.035 5.035 15 C 0.027 3.973 16 C -0.169 4.169 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.167 4.167 20 C -0.188 4.188 21 C 0.052 3.948 22 N -0.310 5.310 23 C -0.385 4.385 24 H 0.082 0.918 25 C -0.188 4.188 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.176 0.824 38 H 0.201 0.799 39 H 0.159 0.841 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.039 0.961 51 H 0.103 0.897 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.391 -2.555 18.869 22.189 hybrid contribution -1.721 -0.808 -0.689 2.023 sum 9.670 -3.364 18.180 20.865 Atomic orbital electron populations 1.21764 0.95682 1.01337 1.00324 1.20384 0.93122 0.93547 0.86526 0.95521 1.22399 0.93355 1.01776 0.99900 1.21140 0.94507 0.96860 0.82616 0.89702 1.46053 1.12137 1.48250 1.29018 1.16949 0.82567 0.81546 0.81707 1.90727 1.57903 1.35611 1.57713 1.21578 0.87350 1.05794 1.01506 1.22240 1.01139 1.01069 0.97820 1.23531 0.89086 1.03507 1.02267 1.73104 1.26217 1.07269 1.04358 1.45963 1.07444 1.30825 1.19252 1.22907 0.85026 0.91958 0.97370 1.22741 0.93443 0.98911 1.01801 1.22469 0.96710 0.99542 0.97199 1.22331 0.95065 1.00643 0.97743 1.22459 0.96422 0.99236 0.98580 1.22619 0.99623 0.99696 0.96861 1.20708 0.83612 0.97092 0.93362 1.44050 1.02749 1.64886 1.19345 1.19031 0.99058 1.35331 0.85090 0.91808 1.25399 0.97078 0.98433 0.97875 1.69947 1.21278 1.46574 1.16571 0.86340 0.80443 0.78539 0.81688 1.21270 1.21670 1.20410 0.92872 0.94397 0.91785 0.92596 0.91728 0.76743 0.82379 0.79917 0.84144 0.90243 0.90463 0.90814 0.90870 0.91179 0.91121 0.90320 0.90549 0.92568 0.93071 0.96094 0.89653 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.04 37.16 0.30 -2.11 16 2 C 0.17 3.41 3.50 -67.60 -0.24 3.18 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.17 4.84 -26.61 -0.13 -2.30 16 5 C 0.15 2.55 2.45 -67.89 -0.17 2.38 16 6 H 0.08 1.61 7.51 -51.93 -0.39 1.22 16 7 N -0.71 -9.80 5.07 -54.93 -0.28 -10.08 16 8 C 0.59 8.91 7.76 -12.64 -0.10 8.81 16 9 O -0.54 -9.75 14.03 5.25 0.07 -9.67 16 10 C -0.03 -0.45 6.96 -82.06 -0.57 -1.02 16 11 C -0.19 -2.07 10.50 -38.98 -0.41 -2.48 16 12 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 13 N -0.28 -3.44 11.04 30.59 0.34 -3.11 16 14 N -0.25 -3.21 3.06 -49.61 -0.15 -3.36 16 15 C 0.13 1.51 3.60 -66.81 -0.24 1.27 16 16 C -0.13 -1.35 6.51 -25.07 -0.16 -1.51 16 17 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 18 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 19 C -0.13 -1.28 6.47 -25.62 -0.17 -1.44 16 20 C -0.15 -2.85 5.65 -26.61 -0.15 -3.00 16 21 C 0.18 4.21 5.20 -3.71 -0.02 4.19 16 22 N -0.59 -14.04 2.96 -164.78 -0.49 -14.53 16 23 C -0.26 -6.66 8.30 -15.06 -0.13 -6.79 16 24 H 0.06 1.63 6.51 -52.49 -0.34 1.29 16 25 C 0.01 0.32 5.18 -17.43 -0.09 0.23 16 26 N -0.90 -25.70 11.19 55.49 0.62 -25.07 16 27 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 31 H 0.05 0.96 7.42 -51.93 -0.39 0.57 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.26 7.68 -51.93 -0.40 0.86 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.40 4.40 7.63 -40.82 -0.31 4.09 16 37 H 0.16 1.23 7.58 -52.49 -0.40 0.84 16 38 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.14 1.93 5.37 -51.92 -0.28 1.65 16 40 H 0.08 0.88 7.77 -51.93 -0.40 0.47 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 0.83 7.62 -51.93 -0.40 0.43 16 48 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 49 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.09 2.26 6.44 -51.93 -0.33 1.92 16 52 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -30.64 402.70 -10.35 -40.99 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -8.69 Total: 5.75 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.82 Total: -3.17 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.04 Total: -56.15 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.64 -10.35 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947360708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.765 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds