Wall clock time and date at job start Wed Apr 1 2020 04:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.58509 * 2 1 4 4 C 1.53159 * 109.53147 * 239.81396 * 2 1 3 5 5 C 1.53217 * 109.54773 * 170.86835 * 4 2 1 6 6 N 1.46685 * 108.84294 * 50.63367 * 5 4 2 7 7 N 1.39625 * 127.22737 * 162.55328 * 6 5 4 8 8 C 1.30616 * 108.86775 * 179.79699 * 7 6 5 9 9 C 1.41467 * 108.07019 * 0.42415 * 8 7 6 10 10 C 1.47431 * 126.48552 * 179.80381 * 9 8 7 11 11 O 1.21601 * 119.99987 * 209.06754 * 10 9 8 12 12 N 1.34781 * 119.99678 * 29.07056 * 10 9 8 13 13 C 1.46924 * 120.63275 * 357.17537 * 12 10 9 14 14 C 1.53187 * 108.77401 * 126.12125 * 13 12 10 15 15 C 1.53037 * 109.31623 * 54.63277 * 14 13 12 16 16 C 1.53034 * 109.54114 * 298.63810 * 15 14 13 17 17 H 1.09001 * 109.49569 * 301.38231 * 16 15 14 18 18 N 1.46501 * 109.50303 * 181.31140 * 16 15 14 19 19 C 1.46500 * 119.99824 * 300.00572 * 18 16 15 20 20 C 1.36932 * 120.00011 * 119.99428 * 18 16 15 21 21 H 1.08008 * 120.00192 * 22.11649 * 20 18 16 22 22 C 1.38813 * 120.00088 * 202.11432 * 20 18 16 23 23 N 1.31615 * 120.00207 * 4.50470 * 22 20 18 24 24 Si 1.86804 * 120.00042 * 184.51264 * 22 20 18 25 25 H 1.48498 * 109.47407 * 59.99604 * 24 22 20 26 26 H 1.48491 * 109.47173 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46505 * 299.99775 * 24 22 20 28 28 C 1.46925 * 120.62568 * 176.89927 * 12 10 9 29 29 C 1.34598 * 124.42911 * 342.59792 * 6 5 4 30 30 C 1.50800 * 124.57773 * 359.90831 * 29 6 5 31 31 H 1.08998 * 109.46871 * 299.82522 * 1 2 3 32 32 H 1.08993 * 109.47078 * 59.82262 * 1 2 3 33 33 H 1.08996 * 109.46870 * 179.82216 * 1 2 3 34 34 H 1.08993 * 109.46105 * 290.89355 * 4 2 1 35 35 H 1.08999 * 109.45580 * 50.86521 * 4 2 1 36 36 H 1.09004 * 109.57419 * 170.44087 * 5 4 2 37 37 H 1.09003 * 109.57575 * 290.69482 * 5 4 2 38 38 H 1.07997 * 125.95978 * 180.24121 * 8 7 6 39 39 H 1.08996 * 109.58806 * 245.90855 * 13 12 10 40 40 H 1.09001 * 109.58366 * 6.33533 * 13 12 10 41 41 H 1.08997 * 109.49919 * 174.58845 * 14 13 12 42 42 H 1.09004 * 109.49594 * 294.64806 * 14 13 12 43 43 H 1.09001 * 109.45588 * 58.65673 * 15 14 13 44 44 H 1.09000 * 109.46177 * 178.62449 * 15 14 13 45 45 H 1.08997 * 109.47588 * 95.85015 * 19 18 16 46 46 H 1.09004 * 109.46546 * 215.85659 * 19 18 16 47 47 H 1.09000 * 109.47209 * 335.85050 * 19 18 16 48 48 H 0.97002 * 120.00601 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.59059 * 353.67173 * 28 12 10 50 50 H 1.09008 * 109.58174 * 114.09382 * 28 12 10 51 51 H 1.08998 * 109.71718 * 104.00436 * 30 29 6 52 52 H 1.09001 * 109.72294 * 224.60340 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0421 -0.7258 -1.2477 5 6 3.5570 -0.5310 -1.3686 6 7 4.1827 -0.8756 -0.0874 7 7 5.5293 -1.1625 0.1449 8 6 5.6939 -1.4167 1.4155 9 6 4.4347 -1.3092 2.0512 10 6 4.1550 -1.5185 3.4835 11 8 3.0622 -1.9172 3.8377 12 7 5.1107 -1.2679 4.4003 13 6 6.4548 -0.8451 3.9842 14 6 6.8090 0.4565 4.7102 15 6 6.6530 0.2533 6.2189 16 6 5.1988 -0.0988 6.5403 17 1 4.5454 0.7014 6.1925 18 7 5.0436 -0.2624 7.9879 19 6 5.8194 -1.2830 8.6969 20 6 4.1736 0.5387 8.6781 21 1 3.3607 1.0255 8.1599 22 6 4.3365 0.7250 10.0440 23 7 5.3768 0.2046 10.6598 24 14 3.0790 1.7143 11.0082 25 1 1.7463 1.0699 10.8904 26 1 3.4792 1.7649 12.4373 27 1 3.0116 3.0941 10.4634 28 6 4.8263 -1.4067 5.8351 29 6 3.5223 -0.9668 1.0819 30 6 2.0431 -0.7269 1.2502 31 1 -0.3633 0.5111 0.8915 32 1 -0.3633 0.5166 -0.8883 33 1 -0.3633 -1.0276 -0.0032 34 1 1.8181 -1.7894 -1.1667 35 1 1.5522 -0.3178 -2.1318 36 1 3.9474 -1.1806 -2.1521 37 1 3.7731 0.5086 -1.6148 38 1 6.6277 -1.6683 1.8961 39 1 7.1781 -1.6175 4.2453 40 1 6.4682 -0.6781 2.9072 41 1 7.8397 0.7301 4.4846 42 1 6.1408 1.2514 4.3787 43 1 7.3036 -0.5581 6.5452 44 1 6.9279 1.1707 6.7393 45 1 6.7157 -0.8294 9.1200 46 1 5.2144 -1.7079 9.4979 47 1 6.1053 -2.0712 8.0004 48 1 5.4908 0.3351 11.6143 49 1 3.7652 -1.6104 5.9793 50 1 5.4169 -2.2250 6.2472 51 1 1.5260 -1.6802 1.3594 52 1 1.8684 -0.1109 2.1323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027665607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:53 Heat of formation + Delta-G solvation = 72.758144 kcal Electronic energy + Delta-G solvation = -31676.213757 eV Core-core repulsion = 27678.240669 eV Total energy + Delta-G solvation = -3997.973088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.93688 -39.54384 -37.51422 -37.21245 -35.03636 -33.34111 -32.20018 -31.34449 -31.25830 -29.68628 -28.31562 -27.05693 -25.96407 -25.15920 -24.39254 -23.39780 -22.18695 -21.71860 -21.29659 -19.92781 -19.03908 -18.47763 -17.31682 -16.70219 -16.26855 -15.71241 -15.56484 -15.24570 -15.03256 -14.79442 -14.56892 -14.28439 -14.05684 -13.83270 -13.69769 -13.54202 -13.19872 -13.06730 -12.70998 -12.63209 -12.49278 -12.39969 -12.12330 -12.06384 -11.81733 -11.50427 -11.28987 -11.16032 -10.91683 -10.89584 -10.84594 -10.75021 -10.50759 -10.31330 -10.22159 -10.07269 -9.81903 -9.72928 -9.55869 -9.38082 -8.71089 -8.51945 -8.18482 -6.70697 -5.65689 -3.12625 1.49239 2.11676 2.11971 3.24426 3.43078 3.47552 3.49017 3.57111 3.97200 4.12715 4.21418 4.26542 4.53716 4.62100 4.73081 4.88478 4.90773 4.97010 5.08469 5.16179 5.17633 5.27298 5.32464 5.33536 5.34563 5.42763 5.46842 5.53203 5.60596 5.64688 5.69243 5.75216 5.81965 5.89705 5.90915 5.96350 6.10745 6.24797 6.27153 6.31851 6.47827 6.60984 6.67599 6.76916 6.90973 7.02695 7.07983 7.42995 7.52574 7.79661 7.80639 7.89609 8.45157 8.55485 9.30675 9.92372 10.40350 11.38220 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.002772 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.342152 B =10100.384500 C =11342.951799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.078 0.922 4 C -0.134 4.134 5 C 0.131 3.869 6 N -0.362 5.362 7 N -0.298 5.298 8 C 0.068 3.932 9 C -0.282 4.282 10 C 0.592 3.408 11 O -0.548 6.548 12 N -0.598 5.598 13 C 0.084 3.916 14 C -0.131 4.131 15 C -0.132 4.132 16 C 0.170 3.830 17 H 0.063 0.937 18 N -0.595 5.595 19 C 0.165 3.835 20 C -0.251 4.251 21 H 0.068 0.932 22 C 0.002 3.998 23 N -0.912 5.912 24 Si 0.907 3.093 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.099 3.901 29 C 0.152 3.848 30 C -0.055 4.055 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.201 0.799 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.048 0.952 47 H -0.005 1.005 48 H 0.252 0.748 49 H 0.089 0.911 50 H 0.063 0.937 51 H 0.099 0.901 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 -1.600 -25.901 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.097 0.903 4 C -0.172 4.172 5 C 0.011 3.989 6 N -0.143 5.143 7 N -0.117 5.117 8 C -0.118 4.118 9 C -0.297 4.297 10 C 0.380 3.620 11 O -0.427 6.427 12 N -0.331 5.331 13 C -0.038 4.038 14 C -0.170 4.170 15 C -0.171 4.171 16 C 0.061 3.939 17 H 0.081 0.919 18 N -0.317 5.317 19 C 0.021 3.979 20 C -0.381 4.381 21 H 0.086 0.914 22 C -0.196 4.196 23 N -0.558 5.558 24 Si 0.737 3.263 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.210 1.210 28 C -0.024 4.024 29 C 0.021 3.979 30 C -0.093 4.093 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.218 0.782 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.067 0.933 47 H 0.013 0.987 48 H 0.062 0.938 49 H 0.108 0.892 50 H 0.081 0.919 51 H 0.117 0.883 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.119 -1.684 -26.773 26.910 hybrid contribution -0.623 0.516 1.451 1.661 sum -2.742 -1.168 -25.322 25.497 Atomic orbital electron populations 1.21793 0.93589 1.02486 1.02415 1.21341 0.97066 0.99802 0.93714 0.90344 1.22079 0.92806 1.02614 0.99729 1.21885 0.92667 1.02182 0.82199 1.48521 1.05694 1.52864 1.07187 1.77102 0.93861 1.23159 1.17592 1.24460 0.98288 0.98476 0.90581 1.19878 0.93432 1.21437 0.94916 1.17218 0.83808 0.77159 0.83834 1.90747 1.23544 1.47062 1.81364 1.47931 1.11402 1.66772 1.06978 1.22413 0.83800 0.96920 1.00715 1.21918 1.01063 0.96891 0.97127 1.22113 0.99658 1.02042 0.93324 1.20567 0.93934 0.94115 0.85298 0.91864 1.43890 1.48346 1.38761 1.00730 1.20833 0.95860 0.88234 0.92961 1.19221 1.04888 1.22905 0.91045 0.91425 1.25032 0.97346 0.99722 0.97497 1.70064 1.28401 1.48220 1.09148 0.86301 0.80873 0.80148 0.79011 1.21046 1.21664 1.21035 1.22406 1.02802 1.00086 0.77134 1.21305 0.95328 0.95892 0.85362 1.20622 0.86855 1.02839 0.99004 0.91793 0.92267 0.92157 0.90369 0.88783 0.88684 0.89555 0.78235 0.91456 0.88441 0.91439 0.91930 0.92459 0.91666 0.95361 0.93346 0.98705 0.93785 0.89233 0.91895 0.88251 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.17 37.16 0.34 -0.50 16 2 C -0.10 -0.69 2.76 -90.30 -0.25 -0.94 16 3 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 4 C -0.13 -0.72 5.23 -26.54 -0.14 -0.86 16 5 C 0.13 0.89 7.27 -3.83 -0.03 0.87 16 6 N -0.36 -3.98 4.01 -56.40 -0.23 -4.21 16 7 N -0.30 -3.71 12.54 30.93 0.39 -3.32 16 8 C 0.07 0.83 9.73 -16.84 -0.16 0.66 16 9 C -0.28 -3.96 5.71 -105.21 -0.60 -4.56 16 10 C 0.59 9.96 7.59 -12.51 -0.09 9.87 16 11 O -0.55 -10.91 15.78 5.28 0.08 -10.83 16 12 N -0.60 -9.66 2.97 -174.04 -0.52 -10.17 16 13 C 0.08 1.07 5.56 -3.71 -0.02 1.05 16 14 C -0.13 -1.80 6.08 -26.62 -0.16 -1.96 16 15 C -0.13 -2.34 5.15 -26.69 -0.14 -2.48 16 16 C 0.17 3.54 2.74 -67.81 -0.19 3.35 16 17 H 0.06 1.39 7.86 -51.93 -0.41 0.99 16 18 N -0.60 -15.00 2.82 -173.35 -0.49 -15.49 16 19 C 0.17 4.10 7.99 59.85 0.48 4.58 16 20 C -0.25 -6.99 9.63 -15.06 -0.15 -7.14 16 21 H 0.07 1.86 7.79 -52.48 -0.41 1.45 16 22 C 0.00 0.04 5.27 -17.43 -0.09 -0.05 16 23 N -0.91 -26.68 10.23 55.49 0.57 -26.11 16 24 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.10 1.89 5.78 -3.71 -0.02 1.87 16 29 C 0.15 1.88 6.64 -81.62 -0.54 1.34 16 30 C -0.05 -0.56 4.81 -27.60 -0.13 -0.70 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.09 0.29 8.12 -51.93 -0.42 -0.13 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.20 1.88 5.93 -52.49 -0.31 1.57 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.07 3.21 -51.93 -0.17 0.90 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.03 0.75 7.39 -51.93 -0.38 0.37 16 46 H 0.05 1.31 7.08 -51.93 -0.37 0.94 16 47 H -0.01 -0.12 6.36 -51.93 -0.33 -0.45 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.09 1.92 7.02 -51.93 -0.36 1.56 16 50 H 0.06 1.19 6.50 -51.92 -0.34 0.86 16 51 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 52 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -33.63 395.39 -9.68 -43.31 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.53 Total: -0.71 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.89 Total: 4.40 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.28 Total: -59.31 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.63 -9.68 -43.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027665607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.071 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds