Wall clock time and date at job start Wed Apr 1 2020 04:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.58509 * 2 1 4 4 C 1.53159 * 109.53147 * 239.81396 * 2 1 3 5 5 C 1.53217 * 109.54773 * 170.86835 * 4 2 1 6 6 N 1.46685 * 108.84294 * 50.63367 * 5 4 2 7 7 N 1.39625 * 127.22737 * 162.55328 * 6 5 4 8 8 C 1.30616 * 108.86775 * 179.79699 * 7 6 5 9 9 C 1.41467 * 108.07019 * 0.42415 * 8 7 6 10 10 C 1.47431 * 126.48552 * 179.80381 * 9 8 7 11 11 O 1.21601 * 119.99987 * 209.06754 * 10 9 8 12 12 N 1.34781 * 119.99678 * 29.07056 * 10 9 8 13 13 C 1.46924 * 120.63275 * 357.17537 * 12 10 9 14 14 C 1.53187 * 108.77401 * 126.12125 * 13 12 10 15 15 C 1.53037 * 109.31623 * 54.63277 * 14 13 12 16 16 C 1.53034 * 109.54114 * 298.63810 * 15 14 13 17 17 H 1.09001 * 109.49569 * 301.38231 * 16 15 14 18 18 N 1.46501 * 109.50303 * 181.31140 * 16 15 14 19 19 C 1.46500 * 119.99824 * 300.00572 * 18 16 15 20 20 C 1.36932 * 120.00011 * 119.99428 * 18 16 15 21 21 H 1.08008 * 120.00192 * 22.11649 * 20 18 16 22 22 C 1.38813 * 120.00088 * 202.11432 * 20 18 16 23 23 N 1.31615 * 120.00207 * 4.50470 * 22 20 18 24 24 Si 1.86804 * 120.00042 * 184.51264 * 22 20 18 25 25 H 1.48498 * 109.47407 * 59.99604 * 24 22 20 26 26 H 1.48491 * 109.47173 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46505 * 299.99775 * 24 22 20 28 28 C 1.46925 * 120.62568 * 176.89927 * 12 10 9 29 29 C 1.34598 * 124.42911 * 342.59792 * 6 5 4 30 30 C 1.50800 * 124.57773 * 359.90831 * 29 6 5 31 31 H 1.08998 * 109.46871 * 299.82522 * 1 2 3 32 32 H 1.08993 * 109.47078 * 59.82262 * 1 2 3 33 33 H 1.08996 * 109.46870 * 179.82216 * 1 2 3 34 34 H 1.08993 * 109.46105 * 290.89355 * 4 2 1 35 35 H 1.08999 * 109.45580 * 50.86521 * 4 2 1 36 36 H 1.09004 * 109.57419 * 170.44087 * 5 4 2 37 37 H 1.09003 * 109.57575 * 290.69482 * 5 4 2 38 38 H 1.07997 * 125.95978 * 180.24121 * 8 7 6 39 39 H 1.08996 * 109.58806 * 245.90855 * 13 12 10 40 40 H 1.09001 * 109.58366 * 6.33533 * 13 12 10 41 41 H 1.08997 * 109.49919 * 174.58845 * 14 13 12 42 42 H 1.09004 * 109.49594 * 294.64806 * 14 13 12 43 43 H 1.09001 * 109.45588 * 58.65673 * 15 14 13 44 44 H 1.09000 * 109.46177 * 178.62449 * 15 14 13 45 45 H 1.08997 * 109.47588 * 95.85015 * 19 18 16 46 46 H 1.09004 * 109.46546 * 215.85659 * 19 18 16 47 47 H 1.09000 * 109.47209 * 335.85050 * 19 18 16 48 48 H 0.97002 * 120.00601 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.59059 * 353.67173 * 28 12 10 50 50 H 1.09008 * 109.58174 * 114.09382 * 28 12 10 51 51 H 1.08998 * 109.71718 * 104.00436 * 30 29 6 52 52 H 1.09001 * 109.72294 * 224.60340 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0421 -0.7258 -1.2477 5 6 3.5570 -0.5310 -1.3686 6 7 4.1827 -0.8756 -0.0874 7 7 5.5293 -1.1625 0.1449 8 6 5.6939 -1.4167 1.4155 9 6 4.4347 -1.3092 2.0512 10 6 4.1550 -1.5185 3.4835 11 8 3.0622 -1.9172 3.8377 12 7 5.1107 -1.2679 4.4003 13 6 6.4548 -0.8451 3.9842 14 6 6.8090 0.4565 4.7102 15 6 6.6530 0.2533 6.2189 16 6 5.1988 -0.0988 6.5403 17 1 4.5454 0.7014 6.1925 18 7 5.0436 -0.2624 7.9879 19 6 5.8194 -1.2830 8.6969 20 6 4.1736 0.5387 8.6781 21 1 3.3607 1.0255 8.1599 22 6 4.3365 0.7250 10.0440 23 7 5.3768 0.2046 10.6598 24 14 3.0790 1.7143 11.0082 25 1 1.7463 1.0699 10.8904 26 1 3.4792 1.7649 12.4373 27 1 3.0116 3.0941 10.4634 28 6 4.8263 -1.4067 5.8351 29 6 3.5223 -0.9668 1.0819 30 6 2.0431 -0.7269 1.2502 31 1 -0.3633 0.5111 0.8915 32 1 -0.3633 0.5166 -0.8883 33 1 -0.3633 -1.0276 -0.0032 34 1 1.8181 -1.7894 -1.1667 35 1 1.5522 -0.3178 -2.1318 36 1 3.9474 -1.1806 -2.1521 37 1 3.7731 0.5086 -1.6148 38 1 6.6277 -1.6683 1.8961 39 1 7.1781 -1.6175 4.2453 40 1 6.4682 -0.6781 2.9072 41 1 7.8397 0.7301 4.4846 42 1 6.1408 1.2514 4.3787 43 1 7.3036 -0.5581 6.5452 44 1 6.9279 1.1707 6.7393 45 1 6.7157 -0.8294 9.1200 46 1 5.2144 -1.7079 9.4979 47 1 6.1053 -2.0712 8.0004 48 1 5.4908 0.3351 11.6143 49 1 3.7652 -1.6104 5.9793 50 1 5.4169 -2.2250 6.2472 51 1 1.5260 -1.6802 1.3594 52 1 1.8684 -0.1109 2.1323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027665607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:52 Heat of formation + Delta-G solvation = 52.547118 kcal Electronic energy + Delta-G solvation = -31677.090173 eV Core-core repulsion = 27678.240669 eV Total energy + Delta-G solvation = -3998.849504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.85333 -40.85835 -38.75569 -38.18914 -36.75088 -34.27821 -33.71231 -32.83945 -32.17261 -30.98723 -29.54441 -28.06575 -27.85823 -26.41396 -25.48303 -24.70531 -23.37862 -22.63733 -22.57216 -20.97863 -20.27652 -19.60482 -18.83807 -18.32911 -17.22967 -17.16210 -16.60635 -16.53207 -16.12141 -15.90080 -15.63251 -15.49472 -15.34668 -15.00584 -14.79376 -14.74010 -14.58989 -14.42060 -13.91267 -13.82771 -13.65746 -13.58022 -13.34557 -13.10308 -12.80894 -12.74810 -12.58437 -12.47110 -12.31083 -12.24353 -12.08877 -11.94053 -11.91029 -11.76663 -11.69941 -11.55927 -11.53616 -11.37889 -10.85751 -10.64148 -10.30681 -9.82334 -9.50154 -8.74749 -7.81358 -5.30415 0.51230 1.11090 1.34455 1.44765 1.47421 1.53802 1.97337 2.34635 2.51124 3.30705 3.31315 3.41987 3.60880 3.63548 3.65130 3.76749 3.94059 4.02182 4.12275 4.16532 4.19091 4.25681 4.27417 4.33439 4.38713 4.54427 4.57830 4.63971 4.64651 4.72817 4.77788 4.81504 4.81725 4.87496 4.90907 4.94470 5.00583 5.04784 5.08899 5.16037 5.26760 5.33406 5.36132 5.39939 5.46382 5.50622 5.58178 5.64430 5.78632 5.85939 6.33313 6.47676 6.55966 7.16179 7.24035 7.87519 8.29520 9.20361 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.002772 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.342152 B =10100.384500 C =11342.951799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.126 4.126 5 C 0.119 3.881 6 N -0.355 5.355 7 N -0.309 5.309 8 C 0.074 3.926 9 C -0.310 4.310 10 C 0.589 3.411 11 O -0.591 6.591 12 N -0.599 5.599 13 C 0.083 3.917 14 C -0.121 4.121 15 C -0.121 4.121 16 C 0.170 3.830 17 H 0.042 0.958 18 N -0.612 5.612 19 C 0.184 3.816 20 C -0.265 4.265 21 H 0.063 0.937 22 C -0.050 4.050 23 N -0.938 5.938 24 Si 0.969 3.031 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.116 3.884 29 C 0.151 3.849 30 C -0.056 4.056 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.226 0.774 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.007 0.993 46 H 0.017 0.983 47 H 0.026 0.974 48 H 0.248 0.752 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 -1.101 -29.261 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.164 4.164 5 C 0.001 3.999 6 N -0.135 5.135 7 N -0.129 5.129 8 C -0.112 4.112 9 C -0.325 4.325 10 C 0.379 3.621 11 O -0.472 6.472 12 N -0.330 5.330 13 C -0.038 4.038 14 C -0.160 4.160 15 C -0.161 4.161 16 C 0.062 3.938 17 H 0.061 0.939 18 N -0.335 5.335 19 C 0.039 3.961 20 C -0.396 4.396 21 H 0.081 0.919 22 C -0.245 4.245 23 N -0.585 5.585 24 Si 0.797 3.203 25 H -0.207 1.207 26 H -0.216 1.216 27 H -0.202 1.202 28 C -0.009 4.009 29 C 0.018 3.982 30 C -0.094 4.094 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.242 0.758 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.122 0.878 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.025 0.975 46 H 0.036 0.964 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.110 0.890 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.473 -1.171 -30.210 30.269 hybrid contribution -0.862 0.353 2.396 2.570 sum -2.335 -0.819 -27.814 27.924 Atomic orbital electron populations 1.21782 0.92729 1.02668 1.02885 1.21314 0.97705 0.99524 0.92716 0.90133 1.22090 0.91961 1.02359 0.99998 1.22348 0.93304 1.03582 0.80693 1.48901 1.05208 1.51478 1.07960 1.77068 0.94742 1.23430 1.17618 1.24762 0.98368 0.97782 0.90327 1.19755 0.95211 1.24049 0.93496 1.17662 0.83120 0.76228 0.85080 1.90717 1.25305 1.48999 1.82223 1.47961 1.12915 1.66716 1.05429 1.22710 0.82129 0.96961 1.01991 1.21872 1.03159 0.97345 0.93609 1.21929 0.96817 1.00926 0.96424 1.20676 0.95752 0.94378 0.83021 0.93941 1.44086 1.48189 1.38761 1.02453 1.20523 0.94181 0.88609 0.92770 1.19490 1.05407 1.22947 0.91717 0.91933 1.25761 0.99320 1.01024 0.98345 1.70231 1.29895 1.49356 1.08989 0.85313 0.78608 0.78942 0.77402 1.20704 1.21619 1.20216 1.21919 1.00808 0.98890 0.79260 1.21546 0.95935 0.94979 0.85744 1.20645 0.86132 1.02506 1.00149 0.92938 0.90175 0.92156 0.90769 0.85425 0.87072 0.87830 0.75789 0.89019 0.86034 0.87837 0.92619 0.92077 0.93886 0.97493 0.96392 0.95553 0.94228 0.92456 0.91524 0.89029 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.17 71.98 0.66 -0.78 16 2 C -0.09 -1.14 2.76 -10.59 -0.03 -1.17 16 3 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 4 C -0.13 -0.96 5.23 30.72 0.16 -0.80 16 5 C 0.12 1.24 7.27 86.42 0.63 1.87 16 6 N -0.36 -7.04 4.01 -332.36 -1.33 -8.37 16 7 N -0.31 -6.91 12.54 -56.07 -0.70 -7.61 16 8 C 0.07 1.61 9.73 85.67 0.83 2.44 16 9 C -0.31 -8.49 5.71 -20.25 -0.12 -8.60 16 10 C 0.59 20.09 7.59 86.66 0.66 20.75 16 11 O -0.59 -24.65 15.78 -4.03 -0.06 -24.71 16 12 N -0.60 -19.09 2.97 -822.78 -2.45 -21.54 16 13 C 0.08 1.89 5.56 86.36 0.48 2.37 16 14 C -0.12 -3.04 6.08 30.67 0.19 -2.85 16 15 C -0.12 -4.26 5.15 30.62 0.16 -4.10 16 16 C 0.17 7.23 2.74 45.07 0.12 7.35 16 17 H 0.04 1.96 7.86 -2.39 -0.02 1.94 16 18 N -0.61 -31.86 2.82 -702.34 -1.98 -33.84 16 19 C 0.18 9.36 7.99 127.77 1.02 10.38 16 20 C -0.27 -15.29 9.63 84.03 0.81 -14.48 16 21 H 0.06 3.57 7.79 -2.91 -0.02 3.55 16 22 C -0.05 -2.87 5.27 84.86 0.45 -2.42 16 23 N -0.94 -56.35 10.23 21.65 0.22 -56.12 16 24 Si 0.97 46.60 29.56 68.60 2.03 48.62 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 C 0.12 4.51 5.78 86.36 0.50 5.01 16 29 C 0.15 3.62 6.64 41.98 0.28 3.90 16 30 C -0.06 -1.16 4.81 30.03 0.14 -1.01 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.67 8.12 -2.39 -0.02 0.66 16 35 H 0.13 0.20 8.12 -2.39 -0.02 0.18 16 36 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.23 3.43 5.93 -2.91 -0.02 3.42 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 40 H 0.12 2.26 3.21 -2.39 -0.01 2.25 16 41 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.06 2.10 7.72 -2.39 -0.02 2.08 16 44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.01 0.37 7.39 -2.39 -0.02 0.35 16 46 H 0.02 0.98 7.08 -2.38 -0.02 0.97 16 47 H 0.03 1.14 6.36 -2.39 -0.02 1.13 16 48 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 49 H 0.06 2.60 7.02 -2.39 -0.02 2.58 16 50 H 0.07 2.53 6.50 -2.38 -0.02 2.51 16 51 H 0.09 2.02 8.11 -2.39 -0.02 2.00 16 52 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -76.82 395.39 3.58 -73.24 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.91 Total: 12.48 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 6.94 Total: 17.85 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -6.24 Total: -127.49 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -76.82 3.58 -73.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027665607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.791 kcal (2) G-P(sol) polarization free energy of solvation -76.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds