Wall clock time and date at job start Wed Apr 1 2020 04:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.53293 * 2 1 4 4 C 1.53171 * 109.53072 * 239.85193 * 2 1 3 5 5 C 1.53222 * 109.54304 * 170.86986 * 4 2 1 6 6 N 1.46686 * 108.83889 * 50.64217 * 5 4 2 7 7 N 1.39621 * 127.21977 * 162.55362 * 6 5 4 8 8 C 1.30606 * 108.86898 * 180.08867 * 7 6 5 9 9 C 1.41464 * 108.07102 * 359.96699 * 8 7 6 10 10 C 1.47428 * 126.48651 * 179.97438 * 9 8 7 11 11 O 1.21612 * 120.00153 * 139.71922 * 10 9 8 12 12 N 1.34780 * 120.00222 * 319.71837 * 10 9 8 13 13 C 1.46924 * 120.62730 * 354.36927 * 12 10 9 14 14 C 1.53197 * 108.77471 * 233.62653 * 13 12 10 15 15 C 1.53036 * 109.31148 * 305.36898 * 14 13 12 16 16 C 1.53032 * 109.53880 * 61.36705 * 15 14 13 17 17 H 1.09001 * 109.50152 * 58.58422 * 16 15 14 18 18 C 1.53009 * 109.49880 * 178.65023 * 16 15 14 19 19 N 1.46501 * 109.47285 * 184.93376 * 18 16 15 20 20 C 1.36938 * 119.99558 * 179.97438 * 19 18 16 21 21 H 1.07990 * 120.00394 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99423 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00339 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99774 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46963 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47024 * 119.99601 * 24 22 20 27 27 H 1.48505 * 109.47204 * 239.99682 * 24 22 20 28 28 C 1.46925 * 120.63030 * 174.38921 * 12 10 9 29 29 C 1.34594 * 124.43636 * 342.90768 * 6 5 4 30 30 C 1.50809 * 124.57198 * 359.25923 * 29 6 5 31 31 H 1.08995 * 109.47629 * 180.14531 * 1 2 3 32 32 H 1.09000 * 109.47365 * 300.15101 * 1 2 3 33 33 H 1.09006 * 109.46840 * 60.14839 * 1 2 3 34 34 H 1.08998 * 109.45676 * 50.84463 * 4 2 1 35 35 H 1.09002 * 109.44587 * 290.87695 * 4 2 1 36 36 H 1.09011 * 109.57024 * 290.84109 * 5 4 2 37 37 H 1.09000 * 109.57402 * 170.45931 * 5 4 2 38 38 H 1.07995 * 125.96446 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.58707 * 113.84320 * 13 12 10 40 40 H 1.08997 * 109.70449 * 353.48703 * 13 12 10 41 41 H 1.08998 * 109.49643 * 185.41678 * 14 13 12 42 42 H 1.08998 * 109.49316 * 65.31806 * 14 13 12 43 43 H 1.08999 * 109.46099 * 301.34288 * 15 14 13 44 44 H 1.09002 * 109.45656 * 181.38403 * 15 14 13 45 45 H 1.08998 * 109.46543 * 304.93528 * 18 16 15 46 46 H 1.09001 * 109.47269 * 64.93042 * 18 16 15 47 47 H 0.96997 * 119.99983 * 0.02562 * 19 18 16 48 48 H 0.97000 * 120.00552 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.58952 * 6.59029 * 28 12 10 50 50 H 1.08997 * 109.58833 * 246.16010 * 28 12 10 51 51 H 1.09005 * 109.87565 * 225.09542 * 30 29 6 52 52 H 1.08999 * 109.50114 * 104.48309 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0420 -0.7250 -1.2483 5 6 3.5570 -0.5301 -1.3690 6 7 4.1825 -0.8758 -0.0880 7 7 5.5290 -1.1629 0.1441 8 6 5.6925 -1.4243 1.4132 9 6 4.4345 -1.3111 2.0502 10 6 4.1548 -1.5219 3.4823 11 8 3.3839 -0.7847 4.0663 12 7 4.7535 -2.5318 4.1443 13 6 5.5902 -3.5043 3.4282 14 6 5.0880 -4.9160 3.7471 15 6 5.0564 -5.1111 5.2647 16 6 4.0907 -4.1022 5.8904 17 1 3.0962 -4.2389 5.4658 18 6 4.0343 -4.3201 7.4038 19 7 3.0236 -3.4346 7.9874 20 6 2.7938 -3.4539 9.3372 21 1 3.3573 -4.1220 9.9714 22 6 1.8357 -2.6152 9.8900 23 7 1.1486 -1.8012 9.1170 24 14 1.5217 -2.6418 11.7313 25 1 2.4188 -3.6367 12.3720 26 1 1.7903 -1.2961 12.2988 27 1 0.1067 -3.0134 11.9868 28 6 4.5816 -2.6812 5.5958 29 6 3.5211 -0.9738 1.0801 30 6 2.0429 -0.7278 1.2498 31 1 -0.3634 -1.0276 0.0026 32 1 -0.3634 0.5162 0.8886 33 1 -0.3633 0.5116 -0.8914 34 1 1.5518 -0.3167 -2.1321 35 1 1.8181 -1.7887 -1.1676 36 1 3.7731 0.5104 -1.6119 37 1 3.9473 -1.1789 -2.1530 38 1 6.6253 -1.6818 1.8927 39 1 6.6262 -3.4032 3.7516 40 1 5.5235 -3.3265 2.3549 41 1 5.7581 -5.6502 3.2998 42 1 4.0841 -5.0450 3.3427 43 1 6.0559 -4.9576 5.6715 44 1 4.7228 -6.1232 5.4937 45 1 3.7723 -5.3575 7.6118 46 1 5.0081 -4.0970 7.8396 47 1 2.5167 -2.8353 7.4175 48 1 0.4788 -1.2154 9.5032 49 1 3.8469 -1.9595 5.9530 50 1 5.5353 -2.5130 6.0960 51 1 1.8686 -0.1114 2.1317 52 1 1.5255 -1.6810 1.3586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265633607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:38 Heat of formation + Delta-G solvation = 37.612258 kcal Electronic energy + Delta-G solvation = -31323.420362 eV Core-core repulsion = 27323.923234 eV Total energy + Delta-G solvation = -3999.497128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.91779 -39.67103 -37.51830 -37.29447 -34.82490 -33.34520 -32.69954 -31.60216 -31.34315 -29.93261 -29.05317 -27.11202 -25.47641 -25.31427 -24.15266 -23.08423 -22.12046 -21.76217 -21.17138 -20.07135 -19.46965 -18.62793 -17.40326 -16.88638 -16.17540 -15.91169 -15.65989 -15.21197 -14.95566 -14.66623 -14.62728 -14.37774 -14.21103 -14.07137 -13.86224 -13.46262 -13.40837 -13.14832 -12.85263 -12.75098 -12.66903 -12.51448 -12.40206 -12.25437 -12.02673 -11.49044 -11.36505 -11.28367 -11.14684 -10.99462 -10.95202 -10.83049 -10.78988 -10.55086 -10.30795 -10.19780 -9.90352 -9.61085 -9.55016 -9.43454 -8.80321 -8.67729 -8.31048 -6.82423 -5.66033 -2.95458 1.49824 2.10917 2.15173 3.14387 3.44892 3.49409 3.54363 3.57085 3.97275 4.14429 4.22534 4.27542 4.59565 4.65886 4.74057 4.84485 4.88899 4.91542 4.96944 5.01524 5.14636 5.17950 5.20531 5.31154 5.33068 5.35776 5.38799 5.44057 5.46985 5.58826 5.67063 5.68248 5.74946 5.78333 5.88710 5.90913 5.91843 5.95766 6.07054 6.19202 6.22050 6.27492 6.29271 6.48689 6.64501 6.67286 6.80390 6.86647 6.96913 7.42618 7.69262 7.78741 8.50214 8.51736 9.62810 10.21543 10.55940 11.56300 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.002752 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.905863 B =10171.334201 C =11748.017120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.134 4.134 5 C 0.132 3.868 6 N -0.362 5.362 7 N -0.299 5.299 8 C 0.079 3.921 9 C -0.282 4.282 10 C 0.591 3.409 11 O -0.532 6.532 12 N -0.606 5.606 13 C 0.104 3.896 14 C -0.132 4.132 15 C -0.112 4.112 16 C -0.106 4.106 17 H 0.073 0.927 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.929 5.929 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.122 3.878 29 C 0.150 3.850 30 C -0.063 4.063 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.189 0.811 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.019 0.981 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.111 0.889 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.338 -0.837 -26.133 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.172 4.172 5 C 0.011 3.989 6 N -0.143 5.143 7 N -0.118 5.118 8 C -0.108 4.108 9 C -0.297 4.297 10 C 0.379 3.621 11 O -0.409 6.409 12 N -0.339 5.339 13 C -0.020 4.020 14 C -0.171 4.171 15 C -0.150 4.150 16 C -0.126 4.126 17 H 0.091 0.909 18 C 0.032 3.968 19 N -0.378 5.378 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.577 5.577 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 C 0.001 3.999 29 C 0.019 3.981 30 C -0.102 4.102 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.206 0.794 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.122 0.878 50 H 0.083 0.917 51 H 0.129 0.871 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.485 -0.329 -26.942 27.713 hybrid contribution -0.528 0.020 1.589 1.675 sum 5.956 -0.309 -25.352 26.044 Atomic orbital electron populations 1.21801 0.93534 1.02509 1.02514 1.21304 0.97084 0.99827 0.93467 0.90275 1.22091 0.92768 1.02582 0.99806 1.21892 0.92696 1.02140 0.82159 1.48506 1.05522 1.52943 1.07305 1.77071 0.93840 1.23195 1.17690 1.24098 0.98179 0.97983 0.90560 1.19835 0.93803 1.21198 0.94866 1.17294 0.79794 0.80263 0.84742 1.90826 1.35383 1.46055 1.68638 1.47966 1.49620 1.27344 1.08961 1.21873 0.94154 0.88532 0.97404 1.21900 1.01852 0.96058 0.97257 1.21519 0.99867 0.99397 0.94217 1.21679 0.99307 0.94143 0.97483 0.90859 1.20635 0.92943 0.94155 0.89020 1.42429 1.43483 1.46130 1.05735 1.19248 1.16121 1.17649 0.84076 0.91219 1.24752 0.99323 0.99245 0.97684 1.69686 1.27233 1.27129 1.33681 0.86149 0.77524 0.77149 0.85554 1.20630 1.21917 1.21960 1.21709 1.02195 0.98174 0.77851 1.21313 0.95486 0.95726 0.85573 1.20724 0.86739 1.02759 0.99940 0.92187 0.91652 0.92256 0.88766 0.90411 0.89583 0.88698 0.79376 0.91578 0.89626 0.91086 0.91697 0.91784 0.91670 0.96165 0.96271 0.78036 0.93591 0.87803 0.91701 0.87117 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.17 37.15 0.34 -0.59 16 2 C -0.10 -0.72 2.76 -90.30 -0.25 -0.97 16 3 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 4 C -0.13 -0.73 5.23 -26.53 -0.14 -0.87 16 5 C 0.13 0.90 7.27 -3.83 -0.03 0.87 16 6 N -0.36 -3.94 4.01 -56.40 -0.23 -4.17 16 7 N -0.30 -3.65 12.54 30.92 0.39 -3.26 16 8 C 0.08 0.93 9.64 -16.85 -0.16 0.76 16 9 C -0.28 -3.89 5.18 -105.22 -0.55 -4.43 16 10 C 0.59 9.83 7.46 -12.52 -0.09 9.74 16 11 O -0.53 -11.08 15.63 5.27 0.08 -10.99 16 12 N -0.61 -9.02 2.97 -174.03 -0.52 -9.54 16 13 C 0.10 1.13 5.48 -3.71 -0.02 1.11 16 14 C -0.13 -1.41 6.08 -26.61 -0.16 -1.58 16 15 C -0.11 -1.41 5.17 -26.70 -0.14 -1.55 16 16 C -0.11 -1.78 2.37 -90.50 -0.21 -2.00 16 17 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 18 C 0.16 3.29 5.65 -4.04 -0.02 3.26 16 19 N -0.73 -19.19 5.38 -59.91 -0.32 -19.51 16 20 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 24 Si 0.90 23.01 29.55 -169.99 -5.02 17.98 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 C 0.12 2.12 5.53 -3.71 -0.02 2.10 16 29 C 0.15 1.85 6.65 -81.62 -0.54 1.30 16 30 C -0.06 -0.67 5.24 -27.59 -0.14 -0.82 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.31 8.12 -51.93 -0.42 -0.12 16 35 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 36 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.19 1.70 7.37 -52.49 -0.39 1.31 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.86 4.80 -51.93 -0.25 0.61 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.39 10.80 6.90 -40.82 -0.28 10.52 16 48 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 49 H 0.10 2.24 6.20 -51.93 -0.32 1.92 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 51 H 0.11 1.42 7.49 -51.93 -0.39 1.03 16 52 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 LS Contribution 404.21 15.07 6.09 6.09 Total: -1.00 -35.72 404.21 -9.97 -45.69 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -8.78 Total: 7.34 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.39 Total: -1.21 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: 0.05 Total: -64.90 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.72 -9.97 -45.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265633607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.300 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds