Wall clock time and date at job start Wed Apr 1 2020 03:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.42944 * 2 1 4 4 C 1.53020 * 109.42845 * 119.84706 * 2 1 3 5 5 C 1.53377 * 109.75476 * 191.78022 * 4 2 1 6 6 C 1.50954 * 108.20290 * 309.33965 * 5 4 2 7 7 N 1.30127 * 128.28414 * 196.74652 * 6 5 4 8 8 N 1.40315 * 108.12206 * 179.86481 * 7 6 5 9 9 H 0.96998 * 126.00343 * 180.02562 * 8 7 6 10 10 C 1.35203 * 107.99164 * 0.03596 * 8 7 6 11 11 C 1.34572 * 107.61983 * 0.03484 * 10 8 7 12 12 C 1.50879 * 128.32798 * 179.86309 * 11 10 8 13 13 H 1.09000 * 109.75081 * 76.98332 * 12 11 10 14 14 C 1.50690 * 109.72004 * 316.34887 * 12 11 10 15 15 O 1.21284 * 120.00178 * 252.92412 * 14 12 11 16 16 N 1.34780 * 120.00133 * 72.92825 * 14 12 11 17 17 C 1.46494 * 120.00209 * 185.08553 * 16 14 12 18 18 C 1.52999 * 109.47193 * 175.06526 * 17 16 14 19 19 N 1.46500 * 110.43387 * 56.71792 * 18 17 16 20 20 C 1.36938 * 119.99962 * 63.91875 * 19 18 17 21 21 H 1.08002 * 119.99791 * 354.66432 * 20 19 18 22 22 C 1.38809 * 120.00297 * 174.38903 * 20 19 18 23 23 N 1.31619 * 120.00280 * 180.27583 * 22 20 19 24 24 Si 1.86795 * 119.99743 * 0.27214 * 22 20 19 25 25 H 1.48503 * 109.47198 * 90.00302 * 24 22 20 26 26 H 1.48505 * 109.47519 * 210.00115 * 24 22 20 27 27 H 1.48500 * 109.47749 * 330.00231 * 24 22 20 28 28 C 1.54888 * 110.49044 * 179.26018 * 18 17 16 29 29 C 1.55229 * 102.59001 * 156.67854 * 28 18 17 30 30 C 1.54262 * 104.23337 * 322.08443 * 29 28 18 31 31 C 1.53867 * 106.59796 * 23.61093 * 30 29 28 32 32 H 1.08997 * 109.47494 * 179.89559 * 1 2 3 33 33 H 1.09009 * 109.47042 * 299.89985 * 1 2 3 34 34 H 1.09006 * 109.47071 * 59.88954 * 1 2 3 35 35 H 1.09002 * 109.42659 * 311.86643 * 4 2 1 36 36 H 1.08997 * 109.42497 * 71.69163 * 4 2 1 37 37 H 1.09000 * 109.71366 * 69.01036 * 5 4 2 38 38 H 1.08998 * 109.71697 * 189.66013 * 5 4 2 39 39 H 1.07998 * 126.19185 * 180.02562 * 10 8 7 40 40 H 0.96996 * 119.99550 * 5.08357 * 16 14 12 41 41 H 1.09007 * 109.47109 * 55.07026 * 17 16 14 42 42 H 1.08995 * 109.47488 * 295.06939 * 17 16 14 43 43 H 0.96995 * 120.00435 * 243.91809 * 19 18 17 44 44 H 0.96999 * 120.00150 * 180.02562 * 23 22 20 45 45 H 1.09000 * 110.75789 * 275.07439 * 28 18 17 46 46 H 1.09003 * 110.75496 * 38.43890 * 28 18 17 47 47 H 1.09005 * 110.46890 * 203.39586 * 29 28 18 48 48 H 1.08998 * 110.58324 * 80.83424 * 29 28 18 49 49 H 1.08999 * 110.03014 * 264.32573 * 30 29 28 50 50 H 1.09000 * 110.07527 * 142.91708 * 30 29 28 51 51 H 1.09004 * 110.03585 * 240.71337 * 31 30 29 52 52 H 1.08997 * 110.07582 * 119.30872 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0390 -0.7182 1.2517 5 6 3.5441 -0.4720 1.4147 6 6 4.2194 -0.7947 0.1038 7 7 5.4827 -1.0118 -0.1203 8 7 5.6442 -1.2753 -1.4890 9 1 6.4817 -1.4722 -1.9369 10 6 4.4272 -1.2063 -2.0740 11 6 3.5306 -0.9102 -1.1152 12 6 2.0401 -0.7209 -1.2541 13 1 1.5524 -1.6915 -1.3443 14 6 1.7450 0.1119 -2.4748 15 8 1.3783 1.2613 -2.3507 16 7 1.8884 -0.4206 -3.7047 17 6 1.7099 0.4191 -4.8918 18 6 2.0462 -0.3915 -6.1451 19 7 1.2204 -1.5999 -6.2095 20 6 -0.1388 -1.4942 -6.3380 21 1 -0.6105 -0.5231 -6.3051 22 6 -0.9099 -2.6346 -6.5161 23 7 -2.2158 -2.5325 -6.6450 24 14 -0.0942 -4.3140 -6.5729 25 1 -0.0242 -4.8771 -5.2006 26 1 -0.8884 -5.2211 -7.4401 27 1 1.2784 -4.1794 -7.1233 28 6 1.8473 0.4695 -7.4172 29 6 2.7672 -0.2353 -8.4500 30 6 4.0026 -0.6604 -7.6297 31 6 3.5442 -0.7597 -6.1642 32 1 -0.3634 -1.0276 -0.0019 33 1 -0.3634 0.5123 0.8910 34 1 -0.3633 0.5156 -0.8890 35 1 1.5126 -0.3379 2.1271 36 1 1.8550 -1.7882 1.1556 37 1 3.7200 0.5726 1.6715 38 1 3.9391 -1.1161 2.2003 39 1 4.2134 -1.3607 -3.1213 40 1 2.1097 -1.3597 -3.8037 41 1 2.3723 1.2825 -4.8290 42 1 0.6753 0.7579 -4.9450 43 1 1.6364 -2.4748 -6.1612 44 1 -2.7547 -3.3295 -6.7690 45 1 0.8071 0.4443 -7.7420 46 1 2.1744 1.4948 -7.2446 47 1 3.0543 0.4582 -9.2404 48 1 2.2705 -1.1089 -8.8721 49 1 4.7894 0.0878 -7.7249 50 1 4.3651 -1.6290 -7.9739 51 1 4.1086 -0.0597 -5.5481 52 1 3.6835 -1.7763 -5.7967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568238564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:05 Heat of formation + Delta-G solvation = 28.328325 kcal Electronic energy + Delta-G solvation = -32415.162794 eV Core-core repulsion = 28415.263084 eV Total energy + Delta-G solvation = -3999.899710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.72468 -39.55940 -38.43911 -36.70769 -34.14737 -33.36149 -32.66640 -31.34695 -30.77903 -29.69449 -28.45107 -28.37458 -26.60000 -24.54016 -23.88054 -23.13177 -21.53771 -20.82932 -20.35162 -19.71898 -18.94575 -18.68072 -17.83867 -17.60501 -16.80078 -15.76817 -15.35475 -15.13774 -14.88416 -14.68742 -14.57770 -14.31292 -14.16776 -13.98454 -13.50025 -13.28067 -13.12904 -12.95301 -12.78853 -12.59667 -12.34951 -12.05314 -11.91420 -11.76726 -11.57814 -11.25837 -11.14520 -10.96050 -10.89963 -10.84262 -10.71575 -10.56945 -10.53722 -10.48330 -10.37827 -10.15633 -10.01358 -9.61070 -9.50335 -9.45846 -8.96796 -8.49259 -8.47745 -7.36604 -5.82191 -3.19635 1.77012 2.54870 2.70139 3.11151 3.29247 3.30838 3.39419 3.68227 4.30043 4.51763 4.60489 4.75750 4.82681 4.95369 4.97637 4.97973 5.03640 5.19637 5.31112 5.34306 5.37618 5.46755 5.48907 5.50849 5.65157 5.70439 5.71505 5.79732 5.83101 5.84475 5.90822 5.95129 5.97153 6.00835 6.09253 6.12015 6.16116 6.21008 6.33125 6.42909 6.46065 6.48868 6.49944 6.53271 6.66126 6.74801 6.92668 7.01748 7.13984 7.54190 7.93027 7.99802 8.36158 8.67582 9.13074 9.84864 10.03151 11.35723 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.003942 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.506636 B = 7101.287469 C = 8060.644532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.069 4.069 3 H 0.084 0.916 4 C -0.111 4.111 5 C -0.039 4.039 6 C 0.091 3.909 7 N -0.291 5.291 8 N -0.483 5.483 9 H 0.439 0.561 10 C 0.069 3.931 11 C -0.223 4.223 12 C -0.025 4.025 13 H 0.098 0.902 14 C 0.521 3.479 15 O -0.545 6.545 16 N -0.707 5.707 17 C 0.119 3.881 18 C 0.194 3.806 19 N -0.733 5.733 20 C -0.238 4.238 21 H 0.092 0.908 22 C 0.010 3.990 23 N -0.930 5.930 24 Si 0.877 3.123 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.277 1.277 28 C -0.127 4.127 29 C -0.114 4.114 30 C -0.119 4.119 31 C -0.126 4.126 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.175 0.825 40 H 0.397 0.603 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.064 0.936 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.742 2.516 10.224 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 H 0.102 0.898 4 C -0.149 4.149 5 C -0.078 4.078 6 C -0.078 4.078 7 N -0.114 5.114 8 N -0.191 5.191 9 H 0.283 0.717 10 C -0.077 4.077 11 C -0.235 4.235 12 C -0.047 4.047 13 H 0.116 0.884 14 C 0.306 3.694 15 O -0.422 6.422 16 N -0.357 5.357 17 C -0.007 4.007 18 C 0.102 3.898 19 N -0.376 5.376 20 C -0.368 4.368 21 H 0.110 0.890 22 C -0.186 4.186 23 N -0.577 5.577 24 Si 0.708 3.292 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.203 1.203 28 C -0.167 4.167 29 C -0.152 4.152 30 C -0.157 4.157 31 C -0.164 4.164 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.192 0.808 40 H 0.231 0.769 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.402 3.340 10.749 19.076 hybrid contribution 0.203 -1.998 -1.055 2.269 sum 15.605 1.342 9.694 18.420 Atomic orbital electron populations 1.21862 0.94344 1.01778 1.02670 1.20953 0.96106 1.00061 0.91718 0.89765 1.21669 0.93811 1.01322 0.98133 1.20166 0.94358 1.02338 0.90980 1.22331 0.90441 0.98399 0.96608 1.76982 1.18131 1.23386 0.92856 1.46265 1.08488 1.58123 1.06236 0.71717 1.22148 0.85491 1.00660 0.99375 1.19645 0.95520 1.15438 0.92935 1.19790 0.91062 0.99784 0.94077 0.88367 1.20329 0.76989 0.87721 0.84343 1.90648 1.46504 1.18491 1.86577 1.45810 1.70871 1.13703 1.05301 1.21825 1.01754 0.92558 0.84521 1.20570 0.88928 0.88180 0.92086 1.42756 1.04333 1.01400 1.89125 1.18927 0.80663 0.95293 1.41920 0.89042 1.24645 0.95189 0.97050 1.01719 1.69690 1.03682 1.28226 1.56100 0.86678 0.78780 0.86145 0.77626 1.21237 1.21924 1.20289 1.22876 1.01164 0.97055 0.95622 1.22261 0.95407 1.00253 0.97279 1.22061 0.97951 1.00463 0.95218 1.22430 0.96216 1.00899 0.96891 0.92854 0.92634 0.91399 0.90579 0.91376 0.89719 0.89983 0.80789 0.76861 0.92670 0.91252 0.80637 0.93073 0.89882 0.92614 0.92835 0.91271 0.92590 0.92572 0.91729 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.97 37.16 0.33 -1.53 16 2 C -0.07 -0.84 1.78 -90.41 -0.16 -1.01 16 3 H 0.08 1.16 7.58 -51.93 -0.39 0.76 16 4 C -0.11 -1.05 5.17 -26.53 -0.14 -1.19 16 5 C -0.04 -0.38 6.31 -27.56 -0.17 -0.55 16 6 C 0.09 1.13 7.10 -82.34 -0.58 0.54 16 7 N -0.29 -3.72 12.68 33.75 0.43 -3.29 16 8 N -0.48 -5.05 7.37 30.35 0.22 -4.82 16 9 H 0.44 3.14 8.96 -182.44 -1.64 1.50 16 10 C 0.07 0.77 11.34 -17.36 -0.20 0.58 16 11 C -0.22 -2.81 5.41 -104.98 -0.57 -3.38 16 12 C -0.02 -0.33 2.32 -92.64 -0.21 -0.54 16 13 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 14 C 0.52 8.40 6.37 -10.99 -0.07 8.33 16 15 O -0.54 -10.53 14.81 5.55 0.08 -10.45 16 16 N -0.71 -10.98 4.55 -60.30 -0.27 -11.25 16 17 C 0.12 2.02 4.37 -4.05 -0.02 2.00 16 18 C 0.19 3.17 0.52 -130.16 -0.07 3.10 16 19 N -0.73 -14.71 4.44 -45.70 -0.20 -14.91 16 20 C -0.24 -6.00 9.03 -15.06 -0.14 -6.14 16 21 H 0.09 2.56 7.37 -52.49 -0.39 2.17 16 22 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 23 N -0.93 -27.85 13.97 55.49 0.78 -27.07 16 24 Si 0.88 20.56 27.69 -169.99 -4.71 15.85 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.04 6.59 56.52 0.37 -5.67 16 28 C -0.13 -2.07 5.89 -24.55 -0.14 -2.22 16 29 C -0.11 -1.68 6.80 -24.89 -0.17 -1.84 16 30 C -0.12 -1.51 6.80 -25.62 -0.17 -1.68 16 31 C -0.13 -1.64 5.76 -25.62 -0.15 -1.79 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.07 1.04 6.82 -51.93 -0.35 0.69 16 35 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.18 1.65 7.02 -52.49 -0.37 1.28 16 40 H 0.40 5.74 7.52 -40.82 -0.31 5.44 16 41 H 0.06 0.89 8.06 -51.92 -0.42 0.47 16 42 H 0.07 1.41 7.59 -51.93 -0.39 1.01 16 43 H 0.36 7.17 5.39 -40.82 -0.22 6.95 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.08 1.60 7.06 -51.93 -0.37 1.23 16 46 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.75 7.78 -51.93 -0.40 0.35 16 52 H 0.06 0.74 7.73 -51.93 -0.40 0.34 16 LS Contribution 400.50 15.07 6.04 6.04 Total: -1.00 -32.12 400.50 -10.24 -42.36 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -9.88 Total: 14.69 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.73 Total: -7.14 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.95 Total: -61.35 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.71 Total: 15.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.12 -10.24 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568238564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.693 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds