Wall clock time and date at job start Wed Apr 1 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47058 * 2 1 4 4 C 1.50701 * 109.47460 * 120.00202 * 2 1 3 5 5 C 1.38678 * 120.41871 * 259.72962 * 4 2 1 6 6 C 1.38625 * 118.42082 * 179.78391 * 5 4 2 7 7 C 1.38232 * 119.16069 * 0.50527 * 6 5 4 8 8 N 1.31854 * 120.76250 * 359.72570 * 7 6 5 9 9 C 1.31888 * 121.72547 * 0.02562 * 8 7 6 10 10 N 1.46899 * 109.47673 * 240.00384 * 2 1 3 11 11 C 1.46902 * 110.99794 * 59.99370 * 10 2 1 12 12 C 1.53238 * 109.35988 * 187.24640 * 11 10 2 13 13 N 1.47087 * 108.51950 * 306.20864 * 12 11 10 14 14 C 1.34779 * 120.86420 * 231.12573 * 13 12 11 15 15 O 1.21279 * 119.99890 * 180.02562 * 14 13 12 16 16 C 1.50691 * 119.99899 * 0.02562 * 14 13 12 17 17 H 1.09001 * 109.47428 * 40.00120 * 16 14 13 18 18 N 1.46905 * 109.46930 * 160.00273 * 16 14 13 19 19 C 1.52997 * 109.47463 * 280.00366 * 16 14 13 20 20 C 1.53004 * 109.47460 * 175.00184 * 19 16 14 21 21 C 1.50698 * 109.46953 * 179.97438 * 20 19 16 22 22 H 1.08003 * 120.00180 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99724 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00124 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99974 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47337 * 60.00127 * 25 23 21 27 27 H 1.48500 * 109.47336 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47118 * 300.00173 * 25 23 21 29 29 C 1.47085 * 118.25417 * 51.14152 * 13 12 11 30 30 C 1.46895 * 111.00492 * 184.29886 * 10 2 1 31 31 H 1.08998 * 109.46911 * 299.99517 * 1 2 3 32 32 H 1.08999 * 109.47352 * 59.99938 * 1 2 3 33 33 H 1.09004 * 109.46549 * 179.97438 * 1 2 3 34 34 H 1.07999 * 120.78909 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.41813 * 180.21764 * 6 5 4 36 36 H 1.07994 * 119.61851 * 179.75133 * 7 6 5 37 37 H 1.08003 * 119.61846 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.49551 * 307.21956 * 11 10 2 39 39 H 1.08996 * 109.49163 * 67.27527 * 11 10 2 40 40 H 1.08993 * 109.63279 * 65.89374 * 12 11 10 41 41 H 1.09004 * 109.62633 * 186.48058 * 12 11 10 42 42 H 1.00899 * 110.99914 * 60.00260 * 18 16 14 43 43 H 1.00910 * 110.99705 * 183.95520 * 18 16 14 44 44 H 1.09010 * 109.46981 * 295.00106 * 19 16 14 45 45 H 1.08999 * 109.47290 * 54.99462 * 19 16 14 46 46 H 1.08997 * 109.46720 * 299.99823 * 20 19 16 47 47 H 1.08999 * 109.46962 * 59.99967 * 20 19 16 48 48 H 0.96994 * 119.99948 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.62892 * 189.12343 * 29 13 12 50 50 H 1.09004 * 109.78626 * 68.64535 * 29 13 12 51 51 H 1.08994 * 109.49171 * 292.70775 * 30 10 2 52 52 H 1.08997 * 109.49262 * 52.75966 * 30 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4675 0.0131 2.3305 6 6 2.9170 -0.6826 3.4421 7 6 2.9265 -2.0646 3.4132 8 7 2.5097 -2.7198 2.3476 9 6 2.0709 -2.0910 1.2745 10 7 2.0198 -0.6924 -1.1994 11 6 1.5487 -0.0262 -2.4210 12 6 1.9256 -0.8749 -3.6400 13 7 3.3714 -1.1416 -3.5945 14 6 4.1536 -0.8970 -4.6645 15 8 5.3439 -1.1233 -4.6099 16 6 3.5492 -0.3425 -5.9286 17 1 2.8004 0.4077 -5.6747 18 7 4.6030 0.2743 -6.7455 19 6 2.8893 -1.4749 -6.7179 20 6 2.1690 -0.8948 -7.9368 21 6 1.5195 -2.0103 -8.7144 22 1 1.6109 -3.0309 -8.3732 23 6 0.8077 -1.7278 -9.8611 24 7 0.6961 -0.4850 -10.2763 25 14 0.0020 -3.1105 -10.8246 26 1 -0.9783 -3.8123 -9.9577 27 1 -0.6969 -2.5475 -12.0078 28 1 1.0412 -4.0710 -11.2750 29 6 3.9408 -1.6826 -2.3509 30 6 3.4846 -0.8016 -1.1831 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 2.4528 1.0930 2.3230 35 1 3.2599 -0.1516 4.3178 36 1 3.2789 -2.6140 4.2736 37 1 1.7379 -2.6617 0.4202 38 1 0.4655 0.0882 -2.3784 39 1 2.0152 0.9554 -2.5030 40 1 1.3788 -1.8173 -3.6134 41 1 1.6816 -0.3324 -4.5534 42 1 5.3098 -0.4014 -6.9942 43 1 4.2140 0.7103 -7.5683 44 1 3.6520 -2.1802 -7.0482 45 1 2.1695 -1.9899 -6.0816 46 1 1.4064 -0.1896 -7.6065 47 1 2.8888 -0.3799 -8.5731 48 1 0.1956 -0.2863 -11.0831 49 1 5.0290 -1.6742 -2.4125 50 1 3.5907 -2.7035 -2.1983 51 1 3.9244 0.1907 -1.2824 52 1 3.8054 -1.2492 -0.2424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424154550.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:31 Heat of formation + Delta-G solvation = 7.508585 kcal Electronic energy + Delta-G solvation = -30889.227097 eV Core-core repulsion = 26888.424576 eV Total energy + Delta-G solvation = -4000.802521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.92082 -40.07374 -38.39740 -35.65593 -35.46281 -32.95561 -32.85903 -31.95926 -31.64181 -29.89819 -29.70817 -27.52953 -26.06063 -24.62976 -24.08276 -23.89697 -23.00338 -21.67504 -20.82558 -20.16701 -18.80822 -17.65952 -17.43048 -16.71814 -16.40785 -16.14296 -15.72329 -15.43872 -15.12105 -14.97376 -14.68127 -14.54621 -14.37824 -14.26531 -14.02445 -13.85250 -13.41605 -13.39744 -13.18556 -12.93626 -12.70112 -12.52072 -12.31464 -12.17003 -11.99866 -11.80921 -11.70619 -11.41900 -11.22416 -11.14115 -11.01997 -10.88889 -10.70557 -10.15427 -9.99250 -9.87869 -9.75454 -9.29090 -9.26674 -9.18349 -8.88766 -8.45648 -8.44211 -8.19130 -6.09378 -4.12431 0.75783 0.93248 2.90824 2.99825 3.28268 3.33112 3.35717 3.39843 3.54882 4.04414 4.35202 4.38662 4.47636 4.54569 4.64929 4.67591 4.75439 4.76778 4.89966 4.94834 5.07416 5.10836 5.15112 5.19550 5.24193 5.26837 5.29886 5.37070 5.42821 5.48882 5.54885 5.61586 5.70522 5.73961 5.75014 5.78315 5.84615 5.89782 5.95774 6.27543 6.36464 6.47249 6.54575 6.67182 6.71222 6.85821 7.38636 7.50029 7.58234 7.63852 7.68350 7.87396 7.89638 8.30155 8.42738 8.93216 9.52495 11.01411 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.002218 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.585279 B =12623.342442 C =13288.952872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.126 3.874 3 H 0.051 0.949 4 C -0.131 4.131 5 C -0.074 4.074 6 C -0.175 4.175 7 C 0.093 3.907 8 N -0.486 5.486 9 C 0.125 3.875 10 N -0.530 5.530 11 C 0.038 3.962 12 C 0.110 3.890 13 N -0.617 5.617 14 C 0.528 3.472 15 O -0.540 6.540 16 C 0.075 3.925 17 H 0.096 0.904 18 N -0.831 5.831 19 C -0.138 4.138 20 C 0.026 3.974 21 C -0.523 4.523 22 H 0.054 0.946 23 C 0.059 3.941 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.119 3.881 30 C 0.043 3.957 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.095 0.905 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.346 0.654 43 H 0.354 0.646 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.018 0.982 47 H 0.017 0.983 48 H 0.262 0.738 49 H 0.093 0.907 50 H 0.072 0.928 51 H 0.038 0.962 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 3.265 26.827 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.017 3.983 3 H 0.069 0.931 4 C -0.133 4.133 5 C -0.100 4.100 6 C -0.195 4.195 7 C -0.063 4.063 8 N -0.194 5.194 9 C -0.032 4.032 10 N -0.256 5.256 11 C -0.090 4.090 12 C -0.013 4.013 13 N -0.352 5.352 14 C 0.317 3.683 15 O -0.416 6.416 16 C -0.040 4.040 17 H 0.113 0.887 18 N -0.363 5.363 19 C -0.178 4.178 20 C -0.011 4.011 21 C -0.562 4.562 22 H 0.072 0.928 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.720 3.280 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.202 1.202 29 C -0.004 4.004 30 C -0.086 4.086 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.181 0.819 38 H 0.113 0.887 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.159 0.841 43 H 0.169 0.831 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.072 0.928 49 H 0.111 0.889 50 H 0.091 0.909 51 H 0.057 0.943 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.174 2.342 27.334 27.460 hybrid contribution -0.571 0.420 -1.199 1.393 sum 0.603 2.762 26.135 26.287 Atomic orbital electron populations 1.21905 0.92746 1.03308 1.02150 1.20453 0.96037 0.94773 0.87016 0.93094 1.20787 1.00776 0.95696 0.96052 1.21477 0.95465 1.00437 0.92622 1.22103 1.02006 0.95931 0.99418 1.22810 0.95415 0.91756 0.96340 1.67801 1.10077 1.41226 1.00324 1.22794 0.93495 0.91396 0.95558 1.61979 1.10357 1.51862 1.01358 1.22608 1.01435 0.95795 0.89194 1.21941 0.80506 1.00717 0.98180 1.48125 1.08527 1.65380 1.13149 1.20902 0.86345 0.76604 0.84438 1.90620 1.15524 1.52432 1.83011 1.21501 0.93794 0.97526 0.91207 0.88654 1.58764 1.14361 1.36728 1.26492 1.22402 0.99681 0.96592 0.99124 1.19087 0.94894 0.96350 0.90790 1.21135 1.32659 0.93547 1.08824 0.92763 1.25009 0.96348 0.95522 0.97409 1.69935 1.41555 1.17909 1.23816 0.86646 0.79608 0.82255 0.79444 1.20184 1.21244 1.20236 1.21569 0.99868 0.96858 0.82124 1.22505 0.87314 0.99464 0.99301 0.92067 0.91492 0.91220 0.85115 0.84891 0.82945 0.81880 0.88691 0.94053 0.90151 0.88283 0.84126 0.83090 0.92680 0.92372 0.96398 0.96455 0.92833 0.88896 0.90926 0.94346 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.96 37.16 0.33 -0.60 16 2 C 0.13 0.94 2.30 -68.87 -0.16 0.78 16 3 H 0.05 0.38 8.03 -51.93 -0.42 -0.04 16 4 C -0.13 -1.03 3.67 -104.48 -0.38 -1.41 16 5 C -0.07 -0.51 9.82 -39.28 -0.39 -0.89 16 6 C -0.17 -1.13 10.11 -39.44 -0.40 -1.53 16 7 C 0.09 0.73 11.18 -17.54 -0.20 0.53 16 8 N -0.49 -4.91 10.36 -13.25 -0.14 -5.05 16 9 C 0.12 1.15 9.30 -17.55 -0.16 0.99 16 10 N -0.53 -4.66 3.86 -227.74 -0.88 -5.54 16 11 C 0.04 0.35 5.39 -3.70 -0.02 0.33 16 12 C 0.11 1.25 5.72 -3.60 -0.02 1.23 16 13 N -0.62 -8.39 3.01 -172.46 -0.52 -8.91 16 14 C 0.53 8.96 6.96 -10.99 -0.08 8.88 16 15 O -0.54 -10.77 15.70 5.56 0.09 -10.68 16 16 C 0.07 1.27 2.36 -68.87 -0.16 1.11 16 17 H 0.10 1.52 6.51 -51.93 -0.34 1.18 16 18 N -0.83 -14.44 8.94 -5.66 -0.05 -14.49 16 19 C -0.14 -2.69 4.58 -26.73 -0.12 -2.81 16 20 C 0.03 0.62 4.74 -27.88 -0.13 0.48 16 21 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 22 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 25 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 C 0.12 1.43 6.60 -3.60 -0.02 1.41 16 30 C 0.04 0.42 5.23 -3.71 -0.02 0.41 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.41 6.25 -51.93 -0.32 0.08 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.16 1.52 7.72 -52.48 -0.41 1.11 16 38 H 0.09 0.72 5.95 -51.93 -0.31 0.41 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.18 5.33 -51.93 -0.28 0.91 16 42 H 0.35 6.12 8.58 -39.29 -0.34 5.78 16 43 H 0.35 6.11 7.55 -39.29 -0.30 5.81 16 44 H 0.05 1.14 8.14 -51.92 -0.42 0.71 16 45 H 0.06 1.09 7.25 -51.93 -0.38 0.71 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.09 1.25 7.06 -51.93 -0.37 0.88 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -31.96 405.92 -10.31 -42.27 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -8.30 Total: 9.20 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.34 Total: -4.05 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.85 Total: -58.97 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.96 -10.31 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424154550.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.783 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds